Wall clock time and date at job start Wed Apr 1 2020 04:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86797 * 120.00351 * 2 1 4 4 H 1.48500 * 109.47055 * 269.99767 * 3 2 1 5 5 H 1.48494 * 109.47038 * 29.99900 * 3 2 1 6 6 H 1.48501 * 109.47067 * 149.99584 * 3 2 1 7 7 C 1.40036 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99813 * 180.02562 * 7 2 1 9 9 C 1.41334 * 120.00225 * 0.02562 * 7 2 1 10 10 C 1.40605 * 119.78645 * 179.97438 * 9 7 2 11 11 C 1.38319 * 119.12647 * 179.97438 * 10 9 7 12 12 C 1.38683 * 118.66835 * 0.02562 * 11 10 9 13 13 C 1.39643 * 119.50273 * 0.02562 * 12 11 10 14 14 N 1.39241 * 119.57766 * 180.02562 * 13 12 11 15 15 C 1.34775 * 120.00147 * 338.03730 * 14 13 12 16 16 O 1.21570 * 120.00093 * 5.04898 * 15 14 13 17 17 N 1.34781 * 120.00035 * 185.05561 * 15 14 13 18 18 C 1.46927 * 120.64925 * 5.48018 * 17 15 14 19 19 C 1.53658 * 108.52040 * 126.28270 * 18 17 15 20 20 C 1.53038 * 109.25911 * 54.87275 * 19 18 17 21 21 C 1.53016 * 109.57052 * 298.58662 * 20 19 18 22 22 C 1.46938 * 120.64569 * 185.76421 * 17 15 14 23 23 O 1.42947 * 109.45383 * 58.64170 * 20 19 18 24 24 C 1.43097 * 113.79490 * 178.60304 * 23 20 19 25 25 C 1.53254 * 108.95131 * 302.06695 * 24 23 20 26 26 C 1.53264 * 108.83196 * 54.54887 * 25 24 23 27 27 O 1.42970 * 109.38903 * 178.61717 * 20 19 18 28 28 N 1.31928 * 120.84744 * 359.97438 * 13 12 11 29 29 H 0.97001 * 119.99474 * 0.02562 * 1 2 3 30 30 H 1.07992 * 120.44013 * 359.97438 * 10 9 7 31 31 H 1.08001 * 120.66471 * 180.02562 * 11 10 9 32 32 H 1.08002 * 120.25208 * 179.97438 * 12 11 10 33 33 H 0.97001 * 120.00076 * 158.02962 * 14 13 12 34 34 H 1.08998 * 109.59324 * 246.12499 * 18 17 15 35 35 H 1.09010 * 109.58406 * 6.55325 * 18 17 15 36 36 H 1.08995 * 109.64533 * 294.87426 * 19 18 17 37 37 H 1.08999 * 109.42090 * 174.74075 * 19 18 17 38 38 H 1.08995 * 109.49211 * 301.31090 * 21 20 19 39 39 H 1.08993 * 109.51476 * 181.24077 * 21 20 19 40 40 H 1.09001 * 109.58296 * 353.44628 * 22 17 15 41 41 H 1.08995 * 109.58462 * 113.86903 * 22 17 15 42 42 H 1.09007 * 109.55106 * 182.22534 * 24 23 20 43 43 H 1.08999 * 109.64398 * 61.96287 * 24 23 20 44 44 H 1.09011 * 109.57966 * 294.74690 * 25 24 23 45 45 H 1.08994 * 109.68824 * 174.42074 * 25 24 23 46 46 H 1.08994 * 109.56271 * 185.60009 * 26 25 24 47 47 H 1.09004 * 109.64581 * 65.32871 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6526 0.7000 6 1 3.5390 1.4400 0.7001 7 6 2.0075 -1.2128 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4368 0.0005 10 6 2.0083 -3.6518 0.0005 11 6 1.3029 -4.8416 0.0011 12 6 -0.0831 -4.7934 0.0011 13 6 -0.7281 -3.5549 0.0000 14 7 -2.1196 -3.5046 0.0005 15 6 -2.8323 -4.5625 -0.4346 16 8 -2.2650 -5.5932 -0.7407 17 7 -4.1740 -4.4778 -0.5304 18 6 -4.8639 -3.2050 -0.2798 19 6 -5.7522 -2.8844 -1.4919 20 6 -6.6893 -4.0649 -1.7573 21 6 -5.8637 -5.3119 -2.0809 22 6 -4.9759 -5.6580 -0.8814 23 8 -7.4873 -4.3095 -0.5968 24 6 -8.4237 -5.3799 -0.7552 25 6 -9.3426 -5.0659 -1.9409 26 6 -8.4789 -4.7896 -3.1765 27 8 -7.5393 -3.7564 -2.8647 28 7 -0.0359 -2.4317 -0.0006 29 1 -0.4849 0.8401 -0.0004 30 1 3.0882 -3.6561 0.0001 31 1 1.8211 -5.7892 0.0015 32 1 -0.6593 -5.7069 0.0011 33 1 -2.5760 -2.7082 0.3141 34 1 -5.4797 -3.2931 0.6153 35 1 -4.1288 -2.4116 -0.1435 36 1 -5.1277 -2.7116 -2.3683 37 1 -6.3418 -1.9917 -1.2831 38 1 -5.2383 -5.1181 -2.9523 39 1 -6.5322 -6.1466 -2.2913 40 1 -4.3148 -6.4844 -1.1424 41 1 -5.6004 -5.9406 -0.0339 42 1 -9.0198 -5.4803 0.1519 43 1 -7.8882 -6.3101 -0.9448 44 1 -9.9457 -4.1870 -1.7129 45 1 -9.9957 -5.9167 -2.1347 46 1 -9.1144 -4.4681 -4.0015 47 1 -7.9439 -5.6961 -3.4598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881144933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:04 Heat of formation + Delta-G solvation = -57.580118 kcal Electronic energy + Delta-G solvation = -31345.626434 eV Core-core repulsion = 27108.449698 eV Total energy + Delta-G solvation = -4237.176736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.14844 -39.98408 -38.01858 -36.53997 -35.89071 -34.36276 -33.38877 -33.06548 -31.38607 -30.69008 -30.32518 -28.90160 -26.32120 -25.55675 -24.91123 -23.96262 -22.33617 -21.54581 -21.49551 -20.02388 -19.27074 -18.34852 -17.64115 -17.35013 -16.72711 -16.31250 -15.98298 -15.46359 -15.39036 -15.23692 -14.94981 -14.56723 -14.44817 -14.07960 -13.96261 -13.67931 -13.59374 -13.26045 -12.88101 -12.84028 -12.57940 -12.34984 -12.13907 -11.94961 -11.91519 -11.48753 -11.34824 -11.32943 -11.22218 -11.08163 -10.99157 -10.84477 -10.61879 -10.32451 -10.07908 -9.82255 -9.69159 -9.21870 -8.98392 -8.60251 -7.98813 -7.63712 -7.04799 -6.37935 -4.46829 2.68287 2.81729 2.98006 3.10540 3.13832 3.25205 3.28494 3.34670 3.70043 3.97312 4.14928 4.27312 4.35025 4.37427 4.48702 4.71903 4.81352 4.82107 4.95529 4.99697 5.05994 5.11478 5.22211 5.32324 5.39480 5.41933 5.50215 5.63849 5.68609 5.72267 5.83344 5.94489 6.02033 6.19164 6.44303 6.48638 6.57590 6.78654 6.84756 6.94012 7.00985 7.08457 7.22853 7.54784 7.63818 7.94704 8.07906 8.20273 8.43009 8.73499 8.91581 9.06508 10.09009 10.34574 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.002653 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.503264 B =10550.884714 C =11795.882830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.436 4.436 8 H 0.084 0.916 9 C 0.279 3.721 10 C -0.290 4.290 11 C -0.051 4.051 12 C -0.313 4.313 13 C 0.370 3.630 14 N -0.657 5.657 15 C 0.712 3.288 16 O -0.569 6.569 17 N -0.631 5.631 18 C 0.116 3.884 19 C -0.107 4.107 20 C 0.277 3.723 21 C -0.186 4.186 22 C 0.141 3.859 23 O -0.378 6.378 24 C 0.053 3.947 25 C -0.191 4.191 26 C 0.054 3.946 27 O -0.384 6.384 28 N -0.508 5.508 29 H 0.270 0.730 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.138 0.862 33 H 0.403 0.597 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.602 -6.721 -2.644 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.153 3.847 10 C -0.313 4.313 11 C -0.076 4.076 12 C -0.338 4.338 13 C 0.135 3.865 14 N -0.306 5.306 15 C 0.414 3.586 16 O -0.446 6.446 17 N -0.370 5.370 18 C -0.008 4.008 19 C -0.146 4.146 20 C 0.200 3.800 21 C -0.225 4.225 22 C 0.018 3.982 23 O -0.299 6.299 24 C -0.023 4.023 25 C -0.229 4.229 26 C -0.023 4.023 27 O -0.305 6.305 28 N -0.227 5.227 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.156 0.844 33 H 0.240 0.760 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.115 0.885 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.777 -6.241 -2.805 20.927 hybrid contribution 0.274 0.027 -0.118 0.300 sum -19.502 -6.214 -2.923 20.676 Atomic orbital electron populations 1.70118 1.07177 1.27396 1.29849 1.26026 0.94885 1.00932 0.93438 0.86349 0.80486 0.80934 0.79132 1.19527 1.20237 1.18606 1.19544 0.94184 0.89199 1.43879 0.89747 1.18169 0.86358 0.92101 0.88099 1.21709 0.98721 0.93523 1.17314 1.20832 0.93766 0.96572 0.96413 1.21818 0.94560 0.97993 1.19384 1.18238 0.81956 0.91068 0.95201 1.42410 1.05538 1.17440 1.65198 1.15664 0.80744 0.83884 0.78318 1.90781 1.67878 1.29910 1.56012 1.47283 1.04327 1.10864 1.74492 1.21704 0.95761 0.85963 0.97337 1.21850 0.96285 0.96238 1.00205 1.22627 0.85659 0.94709 0.76962 1.22966 0.99797 0.98682 1.01033 1.21238 0.93058 0.88358 0.95579 1.88154 1.51565 1.53304 1.36847 1.22646 0.90693 0.90020 0.98986 1.22773 0.99571 1.03665 0.96924 1.22645 0.90950 0.91713 0.96988 1.88167 1.49361 1.42984 1.49939 1.68017 1.08165 1.24653 1.21827 0.91917 0.88313 0.88412 0.84427 0.75997 0.90142 0.89076 0.89017 0.88970 0.89306 0.90204 0.88297 0.91388 0.88361 0.92517 0.90059 0.89843 0.88453 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.80 11.46 55.55 0.64 -18.17 16 2 C 0.07 1.81 5.50 -17.34 -0.10 1.72 16 3 Si 0.91 18.56 29.56 -169.99 -5.02 13.54 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.44 -11.72 9.14 -37.73 -0.34 -12.06 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 9 C 0.28 7.78 6.55 -85.00 -0.56 7.23 16 10 C -0.29 -7.40 9.83 -38.66 -0.38 -7.78 16 11 C -0.05 -1.23 10.15 -39.39 -0.40 -1.63 16 12 C -0.31 -7.83 8.90 -38.89 -0.35 -8.18 16 13 C 0.37 9.37 7.50 -155.00 -1.16 8.20 16 14 N -0.66 -13.70 5.27 -15.79 -0.08 -13.79 16 15 C 0.71 13.72 8.19 -86.92 -0.71 13.01 16 16 O -0.57 -12.60 12.44 5.30 0.07 -12.54 16 17 N -0.63 -9.21 2.97 -178.20 -0.53 -9.73 16 18 C 0.12 1.41 6.13 -3.47 -0.02 1.39 16 19 C -0.11 -1.22 5.49 -26.37 -0.14 -1.37 16 20 C 0.28 3.04 1.07 -26.70 -0.03 3.01 16 21 C -0.19 -1.96 4.37 -26.62 -0.12 -2.08 16 22 C 0.14 1.73 6.20 -3.70 -0.02 1.71 16 23 O -0.38 -4.01 9.09 -59.03 -0.54 -4.55 16 24 C 0.05 0.40 6.59 37.29 0.25 0.65 16 25 C -0.19 -1.26 6.35 -26.46 -0.17 -1.43 16 26 C 0.05 0.42 6.59 37.29 0.25 0.67 16 27 O -0.38 -4.31 10.35 -59.03 -0.61 -4.92 16 28 N -0.51 -14.00 7.89 -10.26 -0.08 -14.08 16 29 H 0.27 6.34 8.29 -40.82 -0.34 6.00 16 30 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 31 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.14 3.43 5.19 -52.81 -0.27 3.15 16 33 H 0.40 7.57 6.42 -40.82 -0.26 7.31 16 34 H 0.08 0.90 7.81 -51.93 -0.41 0.49 16 35 H 0.09 1.13 5.75 -51.92 -0.30 0.84 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.08 0.68 5.13 -51.93 -0.27 0.41 16 40 H 0.10 1.34 7.00 -51.93 -0.36 0.97 16 41 H 0.07 0.75 7.81 -51.93 -0.41 0.34 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 44 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.39 6.51 -51.93 -0.34 0.06 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -32.64 366.34 -10.96 -43.59 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.31 Total: 12.08 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -4.01 Total: 3.05 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.06 Total: -55.77 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -1.08 Total: -22.01 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.64 -10.96 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.986 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds