Wall clock time and date at job start Wed Apr 1 2020 04:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86797 * 120.00351 * 2 1 4 4 H 1.48500 * 109.47055 * 269.99767 * 3 2 1 5 5 H 1.48494 * 109.47038 * 29.99900 * 3 2 1 6 6 H 1.48501 * 109.47067 * 149.99584 * 3 2 1 7 7 C 1.40036 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99813 * 180.02562 * 7 2 1 9 9 C 1.41334 * 120.00225 * 0.02562 * 7 2 1 10 10 C 1.40605 * 119.78645 * 179.97438 * 9 7 2 11 11 C 1.38319 * 119.12647 * 179.97438 * 10 9 7 12 12 C 1.38683 * 118.66835 * 0.02562 * 11 10 9 13 13 C 1.39643 * 119.50273 * 0.02562 * 12 11 10 14 14 N 1.39241 * 119.57766 * 180.02562 * 13 12 11 15 15 C 1.34775 * 120.00147 * 338.03730 * 14 13 12 16 16 O 1.21570 * 120.00093 * 5.04898 * 15 14 13 17 17 N 1.34781 * 120.00035 * 185.05561 * 15 14 13 18 18 C 1.46927 * 120.64925 * 5.48018 * 17 15 14 19 19 C 1.53658 * 108.52040 * 126.28270 * 18 17 15 20 20 C 1.53038 * 109.25911 * 54.87275 * 19 18 17 21 21 C 1.53016 * 109.57052 * 298.58662 * 20 19 18 22 22 C 1.46938 * 120.64569 * 185.76421 * 17 15 14 23 23 O 1.42947 * 109.45383 * 58.64170 * 20 19 18 24 24 C 1.43097 * 113.79490 * 178.60304 * 23 20 19 25 25 C 1.53254 * 108.95131 * 302.06695 * 24 23 20 26 26 C 1.53264 * 108.83196 * 54.54887 * 25 24 23 27 27 O 1.42970 * 109.38903 * 178.61717 * 20 19 18 28 28 N 1.31928 * 120.84744 * 359.97438 * 13 12 11 29 29 H 0.97001 * 119.99474 * 0.02562 * 1 2 3 30 30 H 1.07992 * 120.44013 * 359.97438 * 10 9 7 31 31 H 1.08001 * 120.66471 * 180.02562 * 11 10 9 32 32 H 1.08002 * 120.25208 * 179.97438 * 12 11 10 33 33 H 0.97001 * 120.00076 * 158.02962 * 14 13 12 34 34 H 1.08998 * 109.59324 * 246.12499 * 18 17 15 35 35 H 1.09010 * 109.58406 * 6.55325 * 18 17 15 36 36 H 1.08995 * 109.64533 * 294.87426 * 19 18 17 37 37 H 1.08999 * 109.42090 * 174.74075 * 19 18 17 38 38 H 1.08995 * 109.49211 * 301.31090 * 21 20 19 39 39 H 1.08993 * 109.51476 * 181.24077 * 21 20 19 40 40 H 1.09001 * 109.58296 * 353.44628 * 22 17 15 41 41 H 1.08995 * 109.58462 * 113.86903 * 22 17 15 42 42 H 1.09007 * 109.55106 * 182.22534 * 24 23 20 43 43 H 1.08999 * 109.64398 * 61.96287 * 24 23 20 44 44 H 1.09011 * 109.57966 * 294.74690 * 25 24 23 45 45 H 1.08994 * 109.68824 * 174.42074 * 25 24 23 46 46 H 1.08994 * 109.56271 * 185.60009 * 26 25 24 47 47 H 1.09004 * 109.64581 * 65.32871 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6526 0.7000 6 1 3.5390 1.4400 0.7001 7 6 2.0075 -1.2128 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4368 0.0005 10 6 2.0083 -3.6518 0.0005 11 6 1.3029 -4.8416 0.0011 12 6 -0.0831 -4.7934 0.0011 13 6 -0.7281 -3.5549 0.0000 14 7 -2.1196 -3.5046 0.0005 15 6 -2.8323 -4.5625 -0.4346 16 8 -2.2650 -5.5932 -0.7407 17 7 -4.1740 -4.4778 -0.5304 18 6 -4.8639 -3.2050 -0.2798 19 6 -5.7522 -2.8844 -1.4919 20 6 -6.6893 -4.0649 -1.7573 21 6 -5.8637 -5.3119 -2.0809 22 6 -4.9759 -5.6580 -0.8814 23 8 -7.4873 -4.3095 -0.5968 24 6 -8.4237 -5.3799 -0.7552 25 6 -9.3426 -5.0659 -1.9409 26 6 -8.4789 -4.7896 -3.1765 27 8 -7.5393 -3.7564 -2.8647 28 7 -0.0359 -2.4317 -0.0006 29 1 -0.4849 0.8401 -0.0004 30 1 3.0882 -3.6561 0.0001 31 1 1.8211 -5.7892 0.0015 32 1 -0.6593 -5.7069 0.0011 33 1 -2.5760 -2.7082 0.3141 34 1 -5.4797 -3.2931 0.6153 35 1 -4.1288 -2.4116 -0.1435 36 1 -5.1277 -2.7116 -2.3683 37 1 -6.3418 -1.9917 -1.2831 38 1 -5.2383 -5.1181 -2.9523 39 1 -6.5322 -6.1466 -2.2913 40 1 -4.3148 -6.4844 -1.1424 41 1 -5.6004 -5.9406 -0.0339 42 1 -9.0198 -5.4803 0.1519 43 1 -7.8882 -6.3101 -0.9448 44 1 -9.9457 -4.1870 -1.7129 45 1 -9.9957 -5.9167 -2.1347 46 1 -9.1144 -4.4681 -4.0015 47 1 -7.9439 -5.6961 -3.4598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881144933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:03 Heat of formation + Delta-G solvation = -77.439745 kcal Electronic energy + Delta-G solvation = -31346.487612 eV Core-core repulsion = 27108.449698 eV Total energy + Delta-G solvation = -4238.037914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17925 -41.29933 -39.76276 -37.75893 -36.65722 -36.09963 -35.14517 -33.97179 -32.54936 -32.21832 -31.64428 -30.67031 -27.43715 -26.92148 -26.04483 -25.00183 -23.55702 -23.45567 -22.79100 -21.20995 -20.44305 -19.68576 -19.24882 -18.39816 -18.07180 -17.42651 -17.13217 -16.82026 -16.57406 -16.25335 -16.18116 -15.96048 -15.81649 -15.61852 -15.23970 -14.80173 -14.63358 -14.36734 -14.27399 -14.20207 -13.83175 -13.67336 -13.51986 -13.19110 -12.94156 -12.87689 -12.67381 -12.58084 -12.51313 -12.35766 -12.15057 -11.99098 -11.83567 -11.78989 -11.60704 -11.04770 -10.97880 -10.73773 -10.41082 -9.98123 -9.84726 -9.60468 -8.93771 -8.28157 -6.48384 0.83255 1.13964 1.42258 1.44087 1.55491 1.58492 2.05119 2.25925 2.55033 2.59872 2.76151 2.90402 3.43636 3.54199 3.80936 3.84853 3.87410 3.93592 4.11140 4.14194 4.23500 4.29380 4.32055 4.37243 4.46166 4.49235 4.61826 4.64935 4.66747 4.76647 4.81954 4.87088 4.90048 4.91521 4.95149 5.02852 5.09411 5.18101 5.25703 5.41729 5.61187 5.70054 5.78679 5.88405 6.00860 6.18434 6.21195 6.30409 6.71434 6.83656 6.99780 7.43796 8.12223 8.47315 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.002653 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.503264 B =10550.884714 C =11795.882830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.026 3.974 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.091 0.909 9 C 0.245 3.755 10 C -0.308 4.308 11 C -0.049 4.049 12 C -0.327 4.327 13 C 0.362 3.638 14 N -0.655 5.655 15 C 0.709 3.291 16 O -0.600 6.600 17 N -0.620 5.620 18 C 0.117 3.883 19 C -0.107 4.107 20 C 0.280 3.720 21 C -0.177 4.177 22 C 0.139 3.861 23 O -0.392 6.392 24 C 0.042 3.958 25 C -0.185 4.185 26 C 0.042 3.958 27 O -0.405 6.405 28 N -0.533 5.533 29 H 0.279 0.721 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.410 0.590 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.098 -6.586 -2.644 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.497 4.497 8 H 0.109 0.891 9 C 0.118 3.882 10 C -0.331 4.331 11 C -0.074 4.074 12 C -0.352 4.352 13 C 0.126 3.874 14 N -0.305 5.305 15 C 0.411 3.589 16 O -0.480 6.480 17 N -0.357 5.357 18 C -0.006 4.006 19 C -0.145 4.145 20 C 0.203 3.797 21 C -0.216 4.216 22 C 0.017 3.983 23 O -0.313 6.313 24 C -0.034 4.034 25 C -0.222 4.222 26 C -0.033 4.033 27 O -0.326 6.326 28 N -0.253 5.253 29 H 0.090 0.910 30 H 0.131 0.869 31 H 0.148 0.852 32 H 0.157 0.843 33 H 0.249 0.751 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.131 0.869 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.347 -6.127 -2.806 22.385 hybrid contribution 0.582 -0.095 -0.139 0.606 sum -20.765 -6.222 -2.945 21.876 Atomic orbital electron populations 1.70193 1.08741 1.28997 1.29502 1.26949 0.95812 1.04341 0.92483 0.85126 0.79031 0.75756 0.79264 1.19038 1.19150 1.18032 1.19928 0.94790 0.90075 1.44909 0.89065 1.18700 0.87101 0.93497 0.88891 1.21891 0.99547 0.93430 1.18200 1.21191 0.93646 0.97613 0.94927 1.22020 0.95205 0.98042 1.19951 1.18560 0.83625 0.90856 0.94371 1.42329 1.04214 1.18378 1.65547 1.15802 0.82070 0.82927 0.78088 1.90737 1.69056 1.30858 1.57346 1.47341 1.02746 1.12589 1.73009 1.21836 0.95658 0.84538 0.98554 1.21795 0.96295 0.97331 0.99093 1.22430 0.85773 0.94092 0.77382 1.22879 0.99556 0.99733 0.99404 1.21429 0.92818 0.86960 0.97121 1.88127 1.52129 1.54529 1.36532 1.22933 0.90643 0.89551 1.00234 1.22736 0.99320 1.04420 0.95766 1.22930 0.90878 0.91408 0.98112 1.88137 1.50050 1.44486 1.49943 1.68044 1.08451 1.25616 1.23151 0.91041 0.86860 0.85194 0.84288 0.75111 0.88434 0.89716 0.90316 0.87955 0.90828 0.87661 0.89657 0.89395 0.86893 0.91465 0.90822 0.87221 0.87225 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.57 11.46 21.84 0.25 -39.32 16 2 C 0.03 1.32 5.50 85.29 0.47 1.79 16 3 Si 0.99 37.83 29.56 68.60 2.03 39.85 16 4 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 7 C -0.47 -25.43 9.14 23.47 0.21 -25.22 16 8 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 9 C 0.24 13.98 6.55 40.20 0.26 14.25 16 10 C -0.31 -15.97 9.83 22.87 0.22 -15.74 16 11 C -0.05 -2.39 10.15 22.40 0.23 -2.17 16 12 C -0.33 -16.70 8.90 22.72 0.20 -16.50 16 13 C 0.36 18.80 7.50 133.25 1.00 19.80 16 14 N -0.66 -28.03 5.27 -322.15 -1.70 -29.72 16 15 C 0.71 27.77 8.19 179.05 1.47 29.24 16 16 O -0.60 -27.12 12.44 -3.94 -0.05 -27.17 16 17 N -0.62 -17.93 2.97 -835.97 -2.48 -20.41 16 18 C 0.12 2.77 6.13 86.52 0.53 3.30 16 19 C -0.11 -2.37 5.49 30.83 0.17 -2.20 16 20 C 0.28 5.74 1.07 30.61 0.03 5.78 16 21 C -0.18 -3.49 4.37 30.66 0.13 -3.36 16 22 C 0.14 3.26 6.20 86.36 0.54 3.80 16 23 O -0.39 -7.46 9.09 -126.22 -1.15 -8.61 16 24 C 0.04 0.52 6.59 72.07 0.48 0.99 16 25 C -0.18 -1.90 6.35 30.77 0.20 -1.71 16 26 C 0.04 0.57 6.59 72.07 0.48 1.04 16 27 O -0.40 -8.52 10.35 -126.22 -1.31 -9.82 16 28 N -0.53 -30.25 7.89 -186.38 -1.47 -31.72 16 29 H 0.28 13.14 8.29 -92.71 -0.77 12.37 16 30 H 0.11 5.35 8.06 -2.91 -0.02 5.32 16 31 H 0.13 5.31 8.06 -2.91 -0.02 5.28 16 32 H 0.14 7.05 5.19 -8.02 -0.04 7.01 16 33 H 0.41 15.86 6.42 -92.71 -0.60 15.26 16 34 H 0.10 2.04 7.81 -2.39 -0.02 2.02 16 35 H 0.08 2.13 5.75 -2.38 -0.01 2.11 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 1.53 5.13 -2.39 -0.01 1.52 16 40 H 0.09 2.28 7.00 -2.39 -0.02 2.26 16 41 H 0.09 1.75 7.81 -2.39 -0.02 1.73 16 42 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.07 0.68 6.57 -2.39 -0.02 0.67 16 44 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.07 0.74 6.51 -2.38 -0.02 0.73 16 Total: -1.00 -71.81 366.34 1.14 -70.67 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: 0.40 Total: 43.16 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 6.62 Total: 13.10 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -5.40 Total: -121.17 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.50 Total: -45.60 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.85 kcal Total: -71.81 1.14 -70.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.774 kcal (2) G-P(sol) polarization free energy of solvation -71.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds