Wall clock time and date at job start Wed Apr 1 2020 04:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86810 * 119.99648 * 2 1 4 4 H 1.48500 * 109.46778 * 239.99730 * 3 2 1 5 5 H 1.48492 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46847 * 120.00026 * 3 2 1 7 7 C 1.40023 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00215 * 180.02562 * 7 2 1 9 9 C 1.41335 * 120.00039 * 0.27716 * 7 2 1 10 10 C 1.40611 * 119.78653 * 179.72460 * 9 7 2 11 11 C 1.38313 * 119.12713 * 179.97438 * 10 9 7 12 12 C 1.38694 * 118.66907 * 359.97438 * 11 10 9 13 13 C 1.39640 * 119.49981 * 359.97438 * 12 11 10 14 14 N 1.39248 * 119.57863 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99889 * 339.07428 * 14 13 12 16 16 O 1.21580 * 119.99921 * 3.88793 * 15 14 13 17 17 N 1.34776 * 119.99821 * 183.89035 * 15 14 13 18 18 C 1.47144 * 120.98362 * 5.25860 * 17 15 14 19 19 C 1.52884 * 108.60852 * 230.50291 * 18 17 15 20 20 O 1.42962 * 109.29352 * 307.93454 * 19 18 17 21 21 C 1.42963 * 114.16801 * 62.44818 * 20 19 18 22 22 C 1.47155 * 120.97671 * 185.54199 * 17 15 14 23 23 H 1.09004 * 109.67746 * 249.16398 * 22 17 15 24 24 C 1.53001 * 109.68497 * 9.67908 * 22 17 15 25 25 H 1.09000 * 110.27085 * 301.70470 * 24 22 17 26 26 C 1.54940 * 110.30594 * 63.89996 * 24 22 17 27 27 C 1.55314 * 100.93820 * 155.36177 * 26 24 22 28 28 C 1.54383 * 102.24991 * 325.86211 * 27 26 24 29 29 O 1.43239 * 107.58788 * 21.36327 * 28 27 26 30 30 N 1.31935 * 120.84526 * 359.74512 * 13 12 11 31 31 H 0.96997 * 120.00338 * 359.97438 * 1 2 3 32 32 H 1.07995 * 120.43618 * 359.95568 * 10 9 7 33 33 H 1.07995 * 120.66694 * 180.02562 * 11 10 9 34 34 H 1.08001 * 120.24656 * 179.97438 * 12 11 10 35 35 H 0.97003 * 120.00113 * 159.07128 * 14 13 12 36 36 H 1.08997 * 109.68214 * 350.27945 * 18 17 15 37 37 H 1.08995 * 109.68168 * 110.83574 * 18 17 15 38 38 H 1.08999 * 109.58319 * 187.92149 * 19 18 17 39 39 H 1.09000 * 109.41040 * 67.84039 * 19 18 17 40 40 H 1.09000 * 109.51365 * 177.49385 * 21 20 19 41 41 H 1.09006 * 109.55203 * 57.36856 * 21 20 19 42 42 H 1.08999 * 111.12760 * 273.27366 * 26 24 22 43 43 H 1.08997 * 111.13054 * 37.44610 * 26 24 22 44 44 H 1.09004 * 110.84228 * 207.67853 * 27 26 24 45 45 H 1.09002 * 111.02392 * 84.13327 * 27 26 24 46 46 H 1.09001 * 109.83088 * 261.84688 * 28 27 26 47 47 H 1.09003 * 109.90396 * 140.91577 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0010 9 6 1.3010 -2.4366 -0.0048 10 6 2.0087 -3.6517 -0.0101 11 6 1.3035 -4.8415 -0.0148 12 6 -0.0826 -4.7935 -0.0136 13 6 -0.7277 -3.5550 -0.0071 14 7 -2.1193 -3.5049 -0.0053 15 6 -2.8324 -4.5682 -0.4263 16 8 -2.2636 -5.5957 -0.7406 17 7 -4.1761 -4.4924 -0.4989 18 6 -4.8787 -3.2268 -0.2346 19 6 -5.9927 -3.4898 0.7789 20 8 -6.7974 -4.5804 0.3241 21 6 -6.0933 -5.8193 0.2094 22 6 -4.9841 -5.6744 -0.8387 23 1 -5.4269 -5.5447 -1.8263 24 6 -4.0998 -6.9229 -0.8305 25 1 -3.2790 -6.8090 -1.5385 26 6 -3.5512 -7.1838 0.5949 27 6 -3.2826 -8.7123 0.5320 28 6 -4.4210 -9.2075 -0.3857 29 8 -4.8777 -8.0869 -1.1520 30 7 -0.0356 -2.4318 0.0028 31 1 -0.4850 0.8400 0.0004 32 1 3.0887 -3.6558 -0.0108 33 1 1.8218 -5.7890 -0.0185 34 1 -0.6586 -5.7070 -0.0176 35 1 -2.5754 -2.7047 0.2990 36 1 -4.1792 -2.4965 0.1718 37 1 -5.3107 -2.8466 -1.1603 38 1 -6.6117 -2.5984 0.8810 39 1 -5.5526 -3.7398 1.7442 40 1 -6.7846 -6.6038 -0.0983 41 1 -5.6528 -6.0791 1.1721 42 1 -2.6288 -6.6297 0.7684 43 1 -4.2980 -6.9472 1.3527 44 1 -3.3599 -9.1607 1.5225 45 1 -2.3087 -8.9202 0.0888 46 1 -5.2387 -9.6003 0.2186 47 1 -4.0482 -9.9846 -1.0531 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881146288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:17 Heat of formation + Delta-G solvation = -24.177169 kcal Electronic energy + Delta-G solvation = -32178.971979 eV Core-core repulsion = 27943.243703 eV Total energy + Delta-G solvation = -4235.728275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.26711 -39.23790 -38.63617 -37.74046 -34.84304 -34.71175 -33.38630 -32.19952 -31.82131 -30.42183 -29.46329 -28.51807 -27.07006 -25.49154 -24.63239 -22.97113 -22.06093 -21.79139 -21.53632 -20.62097 -19.40850 -18.05769 -17.51973 -17.17079 -16.40899 -16.01851 -16.01613 -15.90978 -15.56458 -15.04516 -14.94219 -14.68981 -14.53119 -14.49318 -13.97796 -13.90233 -13.31814 -13.25278 -12.90984 -12.60661 -12.45008 -12.23776 -12.01053 -11.69679 -11.57742 -11.43233 -11.26818 -11.19378 -11.06670 -10.90087 -10.73569 -10.65950 -10.58005 -10.20084 -10.12970 -9.78331 -9.57611 -9.22001 -8.73192 -8.43166 -8.06056 -7.71693 -7.13608 -6.45241 -4.54340 2.47082 2.64792 2.91610 3.05030 3.07908 3.21697 3.51337 3.56836 3.84292 3.91765 4.11460 4.51629 4.60622 4.72856 4.74706 4.79860 4.91277 4.94758 5.00231 5.09195 5.20274 5.34058 5.36691 5.53438 5.62338 5.67434 5.70429 5.82787 5.85301 5.87949 6.05183 6.08703 6.15514 6.30320 6.37966 6.52737 6.68221 6.77166 6.88097 6.90559 6.94717 7.11113 7.15895 7.45771 7.54228 7.85663 7.97405 8.11279 8.31461 8.65551 8.79287 8.95719 10.00786 10.27303 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015277 B = 0.003278 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.372472 B = 8538.659090 C =10089.699648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.436 4.436 8 H 0.084 0.916 9 C 0.281 3.719 10 C -0.289 4.289 11 C -0.050 4.050 12 C -0.315 4.315 13 C 0.369 3.631 14 N -0.655 5.655 15 C 0.710 3.290 16 O -0.554 6.554 17 N -0.627 5.627 18 C 0.076 3.924 19 C 0.047 3.953 20 O -0.379 6.379 21 C 0.050 3.950 22 C 0.136 3.864 23 H 0.086 0.914 24 C 0.079 3.921 25 H 0.126 0.874 26 C -0.156 4.156 27 C -0.153 4.153 28 C 0.057 3.943 29 O -0.393 6.393 30 N -0.508 5.508 31 H 0.271 0.729 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.401 0.599 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.057 0.943 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.323 -8.086 2.307 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.152 4.152 3 Si 0.731 3.269 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.154 3.846 10 C -0.312 4.312 11 C -0.075 4.075 12 C -0.339 4.339 13 C 0.134 3.866 14 N -0.304 5.304 15 C 0.413 3.587 16 O -0.432 6.432 17 N -0.368 5.368 18 C -0.048 4.048 19 C -0.031 4.031 20 O -0.297 6.297 21 C -0.027 4.027 22 C 0.032 3.968 23 H 0.104 0.896 24 C 0.023 3.977 25 H 0.143 0.857 26 C -0.193 4.193 27 C -0.191 4.191 28 C -0.020 4.020 29 O -0.313 6.313 30 N -0.227 5.227 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.157 0.843 35 H 0.239 0.761 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.128 0.872 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.910 -7.863 1.884 15.233 hybrid contribution 1.022 0.507 0.341 1.191 sum -11.888 -7.356 2.225 14.156 Atomic orbital electron populations 1.70098 1.07206 1.27570 1.29699 1.26019 0.94886 1.00959 0.93366 0.86399 0.80098 0.80466 0.79895 1.18982 1.20320 1.18966 1.19532 0.94214 0.89245 1.43773 0.89748 1.18144 0.86300 0.92078 0.88068 1.21718 0.98763 0.93538 1.17183 1.20828 0.93803 0.96543 0.96323 1.21815 0.94541 0.97840 1.19747 1.18231 0.81806 0.91148 0.95373 1.42479 1.05630 1.16770 1.65484 1.15673 0.80639 0.83824 0.78561 1.90695 1.68177 1.28959 1.55383 1.47285 1.03996 1.10521 1.74961 1.22314 0.95679 0.86190 1.00601 1.22920 0.93145 0.90980 0.96065 1.87964 1.36173 1.17935 1.87641 1.23181 0.94603 0.86603 0.98349 1.21699 0.91185 0.84674 0.99289 0.89650 1.23821 0.91934 0.83209 0.98749 0.85738 1.23743 1.03468 0.95915 0.96175 1.23049 0.99486 0.96433 1.00090 1.23017 0.96137 0.89289 0.93562 1.88311 1.59895 1.18538 1.64548 1.67997 1.08201 1.24625 1.21882 0.91833 0.88320 0.88437 0.84298 0.76118 0.88802 0.90111 0.87430 0.92509 0.87239 0.92118 0.87189 0.91759 0.90756 0.90365 0.92012 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.33 11.46 55.55 0.64 -17.69 16 2 C 0.07 1.78 5.50 -17.35 -0.10 1.69 16 3 Si 0.91 18.13 29.56 -169.99 -5.02 13.11 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.44 -11.42 9.14 -37.74 -0.34 -11.77 16 8 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 9 C 0.28 7.56 6.55 -85.00 -0.56 7.01 16 10 C -0.29 -7.11 9.83 -38.66 -0.38 -7.49 16 11 C -0.05 -1.15 10.15 -39.39 -0.40 -1.55 16 12 C -0.31 -7.31 8.90 -38.89 -0.35 -7.66 16 13 C 0.37 8.79 7.51 -154.98 -1.16 7.63 16 14 N -0.66 -12.66 5.32 -15.79 -0.08 -12.74 16 15 C 0.71 12.37 7.22 -86.92 -0.63 11.75 16 16 O -0.55 -10.51 6.82 5.30 0.04 -10.48 16 17 N -0.63 -8.69 2.98 -170.69 -0.51 -9.19 16 18 C 0.08 0.84 6.62 -3.75 -0.02 0.82 16 19 C 0.05 0.45 6.97 37.10 0.26 0.71 16 20 O -0.38 -4.41 10.74 -35.23 -0.38 -4.79 16 21 C 0.05 0.57 5.89 37.31 0.22 0.79 16 22 C 0.14 1.77 3.16 -67.42 -0.21 1.56 16 23 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 24 C 0.08 1.11 2.56 -25.71 -0.07 1.05 16 25 H 0.13 2.12 5.81 -52.05 -0.30 1.82 16 26 C -0.16 -2.08 5.40 -24.48 -0.13 -2.22 16 27 C -0.15 -1.75 7.02 -24.78 -0.17 -1.92 16 28 C 0.06 0.62 7.79 37.88 0.30 0.92 16 29 O -0.39 -5.31 10.63 -35.23 -0.37 -5.68 16 30 N -0.51 -13.47 7.89 -10.26 -0.08 -13.55 16 31 H 0.27 6.22 8.29 -40.82 -0.34 5.88 16 32 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 34 H 0.14 3.10 5.06 -52.74 -0.27 2.84 16 35 H 0.40 7.05 6.35 -40.82 -0.26 6.79 16 36 H 0.09 1.02 5.64 -51.93 -0.29 0.73 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.11 1.16 8.00 -51.93 -0.42 0.75 16 41 H 0.06 0.69 5.66 -51.93 -0.29 0.39 16 42 H 0.11 1.78 5.41 -51.93 -0.28 1.50 16 43 H 0.06 0.79 5.54 -51.93 -0.29 0.51 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -29.71 361.78 -10.25 -39.96 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -6.17 Total: 14.31 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -3.75 Total: 1.30 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.04 Total: -53.18 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.72 Total: -20.94 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.11 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.71 -10.25 -39.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.779 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds