Wall clock time and date at job start Wed Apr 1 2020 04:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86810 * 119.99648 * 2 1 4 4 H 1.48500 * 109.46778 * 239.99730 * 3 2 1 5 5 H 1.48492 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46847 * 120.00026 * 3 2 1 7 7 C 1.40023 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00215 * 180.02562 * 7 2 1 9 9 C 1.41335 * 120.00039 * 0.27716 * 7 2 1 10 10 C 1.40611 * 119.78653 * 179.72460 * 9 7 2 11 11 C 1.38313 * 119.12713 * 179.97438 * 10 9 7 12 12 C 1.38694 * 118.66907 * 359.97438 * 11 10 9 13 13 C 1.39640 * 119.49981 * 359.97438 * 12 11 10 14 14 N 1.39248 * 119.57863 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99889 * 339.07428 * 14 13 12 16 16 O 1.21580 * 119.99921 * 3.88793 * 15 14 13 17 17 N 1.34776 * 119.99821 * 183.89035 * 15 14 13 18 18 C 1.47144 * 120.98362 * 5.25860 * 17 15 14 19 19 C 1.52884 * 108.60852 * 230.50291 * 18 17 15 20 20 O 1.42962 * 109.29352 * 307.93454 * 19 18 17 21 21 C 1.42963 * 114.16801 * 62.44818 * 20 19 18 22 22 C 1.47155 * 120.97671 * 185.54199 * 17 15 14 23 23 H 1.09004 * 109.67746 * 249.16398 * 22 17 15 24 24 C 1.53001 * 109.68497 * 9.67908 * 22 17 15 25 25 H 1.09000 * 110.27085 * 301.70470 * 24 22 17 26 26 C 1.54940 * 110.30594 * 63.89996 * 24 22 17 27 27 C 1.55314 * 100.93820 * 155.36177 * 26 24 22 28 28 C 1.54383 * 102.24991 * 325.86211 * 27 26 24 29 29 O 1.43239 * 107.58788 * 21.36327 * 28 27 26 30 30 N 1.31935 * 120.84526 * 359.74512 * 13 12 11 31 31 H 0.96997 * 120.00338 * 359.97438 * 1 2 3 32 32 H 1.07995 * 120.43618 * 359.95568 * 10 9 7 33 33 H 1.07995 * 120.66694 * 180.02562 * 11 10 9 34 34 H 1.08001 * 120.24656 * 179.97438 * 12 11 10 35 35 H 0.97003 * 120.00113 * 159.07128 * 14 13 12 36 36 H 1.08997 * 109.68214 * 350.27945 * 18 17 15 37 37 H 1.08995 * 109.68168 * 110.83574 * 18 17 15 38 38 H 1.08999 * 109.58319 * 187.92149 * 19 18 17 39 39 H 1.09000 * 109.41040 * 67.84039 * 19 18 17 40 40 H 1.09000 * 109.51365 * 177.49385 * 21 20 19 41 41 H 1.09006 * 109.55203 * 57.36856 * 21 20 19 42 42 H 1.08999 * 111.12760 * 273.27366 * 26 24 22 43 43 H 1.08997 * 111.13054 * 37.44610 * 26 24 22 44 44 H 1.09004 * 110.84228 * 207.67853 * 27 26 24 45 45 H 1.09002 * 111.02392 * 84.13327 * 27 26 24 46 46 H 1.09001 * 109.83088 * 261.84688 * 28 27 26 47 47 H 1.09003 * 109.90396 * 140.91577 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0010 9 6 1.3010 -2.4366 -0.0048 10 6 2.0087 -3.6517 -0.0101 11 6 1.3035 -4.8415 -0.0148 12 6 -0.0826 -4.7935 -0.0136 13 6 -0.7277 -3.5550 -0.0071 14 7 -2.1193 -3.5049 -0.0053 15 6 -2.8324 -4.5682 -0.4263 16 8 -2.2636 -5.5957 -0.7406 17 7 -4.1761 -4.4924 -0.4989 18 6 -4.8787 -3.2268 -0.2346 19 6 -5.9927 -3.4898 0.7789 20 8 -6.7974 -4.5804 0.3241 21 6 -6.0933 -5.8193 0.2094 22 6 -4.9841 -5.6744 -0.8387 23 1 -5.4269 -5.5447 -1.8263 24 6 -4.0998 -6.9229 -0.8305 25 1 -3.2790 -6.8090 -1.5385 26 6 -3.5512 -7.1838 0.5949 27 6 -3.2826 -8.7123 0.5320 28 6 -4.4210 -9.2075 -0.3857 29 8 -4.8777 -8.0869 -1.1520 30 7 -0.0356 -2.4318 0.0028 31 1 -0.4850 0.8400 0.0004 32 1 3.0887 -3.6558 -0.0108 33 1 1.8218 -5.7890 -0.0185 34 1 -0.6586 -5.7070 -0.0176 35 1 -2.5754 -2.7047 0.2990 36 1 -4.1792 -2.4965 0.1718 37 1 -5.3107 -2.8466 -1.1603 38 1 -6.6117 -2.5984 0.8810 39 1 -5.5526 -3.7398 1.7442 40 1 -6.7846 -6.6038 -0.0983 41 1 -5.6528 -6.0791 1.1721 42 1 -2.6288 -6.6297 0.7684 43 1 -4.2980 -6.9472 1.3527 44 1 -3.3599 -9.1607 1.5225 45 1 -2.3087 -8.9202 0.0888 46 1 -5.2387 -9.6003 0.2186 47 1 -4.0482 -9.9846 -1.0531 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881146288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:16 Heat of formation + Delta-G solvation = -42.660671 kcal Electronic energy + Delta-G solvation = -32179.773483 eV Core-core repulsion = 27943.243703 eV Total energy + Delta-G solvation = -4236.529780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.50401 -40.61776 -39.69706 -39.26498 -36.26736 -36.01269 -35.12717 -33.33971 -32.80765 -32.27362 -31.06499 -29.69618 -28.14697 -27.30613 -25.65114 -24.19351 -23.53643 -23.29187 -22.63524 -22.02387 -20.77126 -19.39638 -19.17963 -18.33264 -17.90128 -17.28144 -17.15739 -16.83584 -16.72491 -16.50863 -16.23118 -16.08119 -15.79027 -15.62746 -15.54338 -15.07862 -14.71405 -14.59221 -14.32432 -14.12073 -13.81001 -13.45061 -13.26967 -12.95143 -12.89467 -12.71085 -12.64033 -12.55816 -12.47056 -12.25690 -12.04164 -11.89539 -11.78018 -11.64406 -11.35230 -11.17134 -10.94961 -10.76522 -10.04782 -9.93056 -9.65654 -9.53151 -8.93070 -8.29081 -6.49040 0.82862 1.14176 1.25724 1.43135 1.53989 1.56888 2.02378 2.24845 2.53829 2.73891 2.89589 3.02800 3.54356 3.61100 3.76776 3.85475 3.93392 3.98081 4.03478 4.08910 4.15595 4.28735 4.34182 4.34909 4.47593 4.60885 4.69206 4.72031 4.79758 4.83070 4.84133 4.89183 4.92344 4.93341 4.98296 5.10537 5.22631 5.25447 5.27159 5.41634 5.53848 5.70408 5.75048 5.99456 6.03454 6.10544 6.17173 6.30584 6.69115 6.82275 6.99004 7.42307 8.12359 8.46009 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015277 B = 0.003278 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.372472 B = 8538.659090 C =10089.699648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.029 3.971 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.469 4.469 8 H 0.089 0.911 9 C 0.248 3.752 10 C -0.310 4.310 11 C -0.049 4.049 12 C -0.323 4.323 13 C 0.362 3.638 14 N -0.654 5.654 15 C 0.707 3.293 16 O -0.571 6.571 17 N -0.619 5.619 18 C 0.070 3.930 19 C 0.050 3.950 20 O -0.386 6.386 21 C 0.060 3.940 22 C 0.134 3.866 23 H 0.084 0.916 24 C 0.086 3.914 25 H 0.090 0.910 26 C -0.152 4.152 27 C -0.149 4.149 28 C 0.052 3.948 29 O -0.402 6.402 30 N -0.534 5.534 31 H 0.279 0.721 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.148 0.852 35 H 0.408 0.592 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.137 0.863 39 H 0.059 0.941 40 H 0.121 0.879 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.757 -7.995 2.947 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.501 4.501 8 H 0.107 0.893 9 C 0.121 3.879 10 C -0.333 4.333 11 C -0.074 4.074 12 C -0.348 4.348 13 C 0.127 3.873 14 N -0.303 5.303 15 C 0.410 3.590 16 O -0.450 6.450 17 N -0.358 5.358 18 C -0.052 4.052 19 C -0.028 4.028 20 O -0.304 6.304 21 C -0.018 4.018 22 C 0.031 3.969 23 H 0.102 0.898 24 C 0.029 3.971 25 H 0.108 0.892 26 C -0.189 4.189 27 C -0.187 4.187 28 C -0.024 4.024 29 O -0.322 6.322 30 N -0.254 5.254 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.146 0.854 34 H 0.165 0.835 35 H 0.246 0.754 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.155 0.845 39 H 0.077 0.923 40 H 0.139 0.861 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.114 0.886 45 H 0.084 0.916 46 H 0.104 0.896 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.402 -7.798 2.524 16.571 hybrid contribution 1.377 0.361 0.106 1.428 sum -13.025 -7.437 2.630 15.227 Atomic orbital electron populations 1.70171 1.08652 1.29017 1.29598 1.26891 0.95791 1.04186 0.92458 0.85216 0.78664 0.75644 0.79875 1.18739 1.19163 1.18418 1.19902 0.94762 0.90240 1.45174 0.89267 1.18627 0.87095 0.93340 0.88816 1.21882 0.99452 0.93593 1.18366 1.21187 0.93893 0.97394 0.94924 1.22081 0.94991 0.98113 1.19578 1.18547 0.83510 0.90881 0.94410 1.42389 1.04193 1.17758 1.66000 1.15783 0.81745 0.83006 0.78460 1.90700 1.69124 1.29357 1.55843 1.47294 1.02738 1.11961 1.73828 1.22562 0.96000 0.84893 1.01769 1.23057 0.92864 0.91555 0.95290 1.87966 1.36529 1.18213 1.87670 1.23114 0.93966 0.87057 0.97631 1.21793 0.91248 0.83848 1.00054 0.89846 1.23468 0.91397 0.84069 0.98188 0.89238 1.23599 1.02281 0.97008 0.96019 1.23042 0.99154 0.95099 1.01383 1.23218 0.96799 0.88626 0.93755 1.88293 1.59682 1.18889 1.65359 1.68012 1.08400 1.25795 1.23158 0.91052 0.87218 0.85396 0.83508 0.75362 0.88729 0.89110 0.84548 0.92279 0.86121 0.91837 0.90159 0.90457 0.88552 0.91574 0.89569 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.59 11.46 21.84 0.25 -38.34 16 2 C 0.03 1.42 5.50 85.29 0.47 1.89 16 3 Si 0.99 37.09 29.56 68.60 2.03 39.12 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.47 -25.18 9.14 23.47 0.21 -24.97 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 9 C 0.25 13.76 6.55 40.21 0.26 14.03 16 10 C -0.31 -15.61 9.83 22.87 0.22 -15.39 16 11 C -0.05 -2.29 10.15 22.40 0.23 -2.06 16 12 C -0.32 -15.32 8.90 22.72 0.20 -15.11 16 13 C 0.36 17.72 7.51 133.24 1.00 18.72 16 14 N -0.65 -25.79 5.32 -322.13 -1.71 -27.51 16 15 C 0.71 25.00 7.22 179.05 1.29 26.29 16 16 O -0.57 -22.28 6.82 -3.97 -0.03 -22.31 16 17 N -0.62 -16.86 2.98 -812.20 -2.42 -19.28 16 18 C 0.07 1.47 6.62 86.22 0.57 2.04 16 19 C 0.05 0.85 6.97 71.94 0.50 1.35 16 20 O -0.39 -7.98 10.74 -148.98 -1.60 -9.59 16 21 C 0.06 1.23 5.89 72.08 0.42 1.66 16 22 C 0.13 3.39 3.16 44.96 0.14 3.53 16 23 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 24 C 0.09 2.39 2.56 31.26 0.08 2.47 16 25 H 0.09 3.16 5.81 -7.28 -0.04 3.12 16 26 C -0.15 -3.98 5.40 32.05 0.17 -3.80 16 27 C -0.15 -3.22 7.02 31.86 0.22 -3.00 16 28 C 0.05 1.05 7.79 72.45 0.56 1.61 16 29 O -0.40 -10.38 10.63 -148.98 -1.58 -11.97 16 30 N -0.53 -29.16 7.89 -186.37 -1.47 -30.63 16 31 H 0.28 12.83 8.29 -92.71 -0.77 12.06 16 32 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 33 H 0.13 4.99 8.06 -2.91 -0.02 4.96 16 34 H 0.15 6.71 5.06 -10.03 -0.05 6.66 16 35 H 0.41 14.59 6.35 -92.71 -0.59 14.00 16 36 H 0.09 1.99 5.64 -2.39 -0.01 1.97 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.12 2.25 8.00 -2.39 -0.02 2.23 16 41 H 0.06 1.29 5.66 -2.38 -0.01 1.28 16 42 H 0.08 2.64 5.41 -2.39 -0.01 2.63 16 43 H 0.08 1.79 5.54 -2.39 -0.01 1.78 16 44 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -65.75 361.78 0.41 -65.33 By element: Atomic # 1 Polarization: 45.52 SS G_CDS: 0.37 Total: 45.89 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 6.57 Total: 9.26 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -5.35 Total: -115.75 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -3.21 Total: -43.86 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -65.75 0.41 -65.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.674 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds