Wall clock time and date at job start Wed Apr 1 2020 04:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86802 * 120.00038 * 2 1 4 4 H 1.48497 * 109.47041 * 269.99785 * 3 2 1 5 5 H 1.48496 * 109.47277 * 29.99731 * 3 2 1 6 6 H 1.48498 * 109.47301 * 150.00026 * 3 2 1 7 7 C 1.40028 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.41330 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.40606 * 119.78843 * 180.02562 * 9 7 2 11 11 C 1.38316 * 119.12937 * 180.02562 * 10 9 7 12 12 C 1.38682 * 118.66905 * 359.72473 * 11 10 9 13 13 C 1.39651 * 119.49806 * 0.52192 * 12 11 10 14 14 N 1.39251 * 119.57412 * 179.74597 * 13 12 11 15 15 C 1.34782 * 119.99564 * 185.40612 * 14 13 12 16 16 O 1.21575 * 120.00107 * 354.85545 * 15 14 13 17 17 N 1.34770 * 119.99346 * 174.85785 * 15 14 13 18 18 C 1.46508 * 119.99612 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.47185 * 180.02562 * 18 17 15 20 20 H 1.09009 * 110.61599 * 303.38804 * 19 18 17 21 21 C 1.54982 * 110.83919 * 180.22115 * 19 18 17 22 22 O 1.44993 * 101.85389 * 206.45063 * 21 19 18 23 23 C 1.42892 * 104.54789 * 35.22210 * 22 21 19 24 24 C 1.54113 * 110.68378 * 99.25102 * 23 22 21 25 25 C 1.54400 * 104.14448 * 155.76673 * 24 23 22 26 26 C 1.53927 * 106.63224 * 337.13211 * 25 24 23 27 27 C 1.54109 * 110.69993 * 213.60973 * 23 22 21 28 28 O 1.42506 * 109.85568 * 336.44716 * 23 22 21 29 29 N 1.31927 * 120.84547 * 359.46884 * 13 12 11 30 30 H 0.97003 * 120.00147 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.43459 * 359.97438 * 10 9 7 32 32 H 1.07999 * 120.66370 * 180.02562 * 11 10 9 33 33 H 1.08003 * 120.25569 * 180.26146 * 12 11 10 34 34 H 0.97000 * 120.00121 * 5.39978 * 14 13 12 35 35 H 0.96997 * 120.01085 * 359.97438 * 17 15 14 36 36 H 1.09001 * 109.46906 * 60.00101 * 18 17 15 37 37 H 1.09001 * 109.47114 * 299.99936 * 18 17 15 38 38 H 1.09001 * 110.95011 * 324.59166 * 21 19 18 39 39 H 1.09002 * 110.95106 * 88.27361 * 21 19 18 40 40 H 1.09000 * 110.49484 * 37.10506 * 24 23 22 41 41 H 1.08998 * 110.49529 * 274.43457 * 24 23 22 42 42 H 1.09000 * 110.03113 * 217.83315 * 25 24 23 43 43 H 1.09004 * 110.02632 * 96.42453 * 25 24 23 44 44 H 1.09001 * 110.02610 * 119.29375 * 26 25 24 45 45 H 1.08998 * 110.02948 * 240.66052 * 26 25 24 46 46 H 1.08996 * 110.49307 * 85.58144 * 27 23 22 47 47 H 1.09000 * 110.60984 * 322.96851 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3008 -2.4367 0.0016 10 6 2.0084 -3.6517 0.0027 11 6 1.3031 -4.8416 0.0032 12 6 -0.0829 -4.7934 0.0085 13 6 -0.7280 -3.5548 0.0021 14 7 -2.1196 -3.5047 0.0020 15 6 -2.7511 -2.3197 -0.1142 16 8 -2.1092 -1.2872 -0.1247 17 7 -4.0942 -2.2794 -0.2186 18 6 -4.7808 -0.9913 -0.3443 19 6 -6.2894 -1.2252 -0.4450 20 1 -6.5203 -1.8863 -1.2803 21 6 -7.0476 0.1193 -0.5849 22 8 -8.3451 -0.2113 -0.0285 23 6 -8.0591 -1.1298 1.0281 24 6 -8.0617 -0.4099 2.3907 25 6 -8.3697 -1.5295 3.4084 26 6 -9.0845 -2.6483 2.6295 27 6 -9.1868 -2.1712 1.1646 28 8 -6.8058 -1.7651 0.7911 29 7 -0.0358 -2.4317 0.0015 30 1 -0.4850 0.8401 -0.0004 31 1 3.0884 -3.6559 0.0023 32 1 1.8214 -5.7891 0.0045 33 1 -0.6591 -5.7069 0.0133 34 1 -2.6344 -4.3226 0.0854 35 1 -4.6063 -3.1031 -0.2105 36 1 -4.4314 -0.4793 -1.2409 37 1 -4.5661 -0.3782 0.5311 38 1 -6.5621 0.9029 -0.0032 39 1 -7.1344 0.4106 -1.6317 40 1 -8.8387 0.3542 2.4172 41 1 -7.0851 0.0304 2.5916 42 1 -9.0196 -1.1492 4.1964 43 1 -7.4426 -1.9079 3.8389 44 1 -8.5040 -3.5694 2.6824 45 1 -10.0808 -2.8113 3.0403 46 1 -9.0229 -3.0032 0.4799 47 1 -10.1579 -1.7117 0.9799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881149006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:57 Heat of formation + Delta-G solvation = -57.379621 kcal Electronic energy + Delta-G solvation = -30755.872898 eV Core-core repulsion = 26518.704856 eV Total energy + Delta-G solvation = -4237.168042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15269 -39.39716 -37.73589 -36.86244 -35.55166 -34.29255 -33.72557 -32.94379 -30.76816 -30.22112 -29.15205 -28.84865 -27.21704 -25.75091 -25.15898 -22.41814 -21.74918 -21.13600 -20.89110 -20.70892 -19.74508 -18.05564 -17.66617 -17.28229 -16.67287 -16.25868 -15.78258 -15.50899 -15.13662 -14.86823 -14.57767 -14.39198 -14.33323 -13.99075 -13.67082 -13.43593 -13.15287 -13.02985 -12.89844 -12.76764 -12.56930 -12.25476 -12.05621 -11.89843 -11.75828 -11.53854 -11.45154 -11.38294 -11.12476 -10.91468 -10.73280 -10.60854 -10.42552 -10.38389 -9.89320 -9.72064 -9.66100 -9.10290 -8.98756 -8.47197 -7.91136 -7.17229 -6.89813 -6.07009 -4.34981 2.87913 3.05499 3.16689 3.19603 3.22202 3.24321 3.30888 3.62962 4.10032 4.18728 4.25051 4.26241 4.31183 4.57618 4.65101 4.72494 4.87035 4.99446 5.08187 5.10696 5.17355 5.20065 5.33525 5.36532 5.40198 5.58071 5.64552 5.66495 5.75079 5.86678 5.90483 5.94807 6.07218 6.09491 6.13986 6.51941 6.65030 6.83464 6.88743 6.91021 6.97425 7.27559 7.39938 7.66276 7.78310 7.85855 8.21404 8.33936 8.69904 8.84320 9.10496 9.62502 10.31533 10.53839 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.002678 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.376651 B =10454.408061 C =11731.831510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.307 4.307 11 C -0.036 4.036 12 C -0.358 4.358 13 C 0.387 3.613 14 N -0.673 5.673 15 C 0.665 3.335 16 O -0.464 6.464 17 N -0.755 5.755 18 C 0.152 3.848 19 C 0.039 3.961 20 H 0.092 0.908 21 C 0.024 3.976 22 O -0.367 6.367 23 C 0.250 3.750 24 C -0.145 4.145 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.126 4.126 28 O -0.356 6.356 29 N -0.472 5.472 30 H 0.271 0.729 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.395 0.605 35 H 0.387 0.613 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.870 -1.324 1.237 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.267 5.267 2 C -0.173 4.173 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.384 4.384 13 C 0.148 3.852 14 N -0.321 5.321 15 C 0.363 3.637 16 O -0.328 6.328 17 N -0.416 5.416 18 C 0.026 3.974 19 C -0.019 4.019 20 H 0.110 0.890 21 C -0.053 4.053 22 O -0.287 6.287 23 C 0.172 3.828 24 C -0.183 4.183 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.163 4.163 28 O -0.277 6.277 29 N -0.190 5.190 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.228 0.772 35 H 0.220 0.780 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.000 0.632 1.294 20.051 hybrid contribution 0.334 -0.952 -0.019 1.009 sum -19.666 -0.320 1.275 19.709 Atomic orbital electron populations 1.70357 1.05572 1.27198 1.23568 1.26193 0.95140 1.00501 0.95465 0.86545 0.80569 0.82048 0.78941 1.19727 1.20392 1.18813 1.19566 0.94009 0.89384 1.42660 0.90023 1.18396 0.87173 0.91952 0.87894 1.21620 0.98516 0.93550 1.19308 1.20542 0.93126 0.96510 0.95857 1.20438 0.94752 0.94810 1.28428 1.18336 0.82432 0.90876 0.93582 1.42539 1.05221 1.07951 1.76384 1.16400 0.81203 0.85534 0.80573 1.91387 1.62317 1.29854 1.49221 1.45110 1.05812 1.08195 1.82485 1.21052 0.86736 0.86506 1.03077 1.24169 0.95001 0.94805 0.87923 0.89015 1.24374 0.82870 0.96593 1.01423 1.89163 1.27373 1.62626 1.49550 1.23752 0.84750 0.86283 0.87980 1.22853 1.03130 0.98413 0.93891 1.22044 1.00860 0.95246 0.97592 1.22066 1.00717 0.98894 0.94010 1.22523 0.97817 0.98139 0.97857 1.88905 1.34119 1.64051 1.40597 1.68689 1.06848 1.23145 1.20350 0.91734 0.88617 0.88651 0.89180 0.77217 0.78002 0.90184 0.91019 0.89904 0.86929 0.89818 0.90444 0.91537 0.91153 0.91194 0.91464 0.90402 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.18 8.99 55.55 0.50 -17.68 16 2 C 0.06 1.50 5.50 -17.35 -0.10 1.41 16 3 Si 0.89 19.43 29.56 -169.99 -5.02 14.41 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.43 -11.87 9.14 -37.74 -0.34 -12.22 16 8 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 9 C 0.27 7.74 6.55 -85.00 -0.56 7.19 16 10 C -0.31 -7.85 9.83 -38.66 -0.38 -8.23 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.19 9.95 -38.89 -0.39 -8.58 16 13 C 0.39 9.65 7.43 -154.98 -1.15 8.50 16 14 N -0.67 -13.63 5.39 -15.79 -0.09 -13.72 16 15 C 0.66 13.79 8.52 -86.92 -0.74 13.05 16 16 O -0.46 -11.88 12.11 5.30 0.06 -11.81 16 17 N -0.76 -11.36 5.55 -65.22 -0.36 -11.72 16 18 C 0.15 1.99 5.43 -4.04 -0.02 1.97 16 19 C 0.04 0.40 3.72 -25.69 -0.10 0.30 16 20 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 21 C 0.02 0.22 7.42 38.20 0.28 0.50 16 22 O -0.37 -3.93 11.11 -59.02 -0.66 -4.58 16 23 C 0.25 2.60 1.21 -25.57 -0.03 2.57 16 24 C -0.14 -1.40 6.27 -25.42 -0.16 -1.56 16 25 C -0.12 -1.04 6.81 -25.51 -0.17 -1.21 16 26 C -0.12 -0.96 6.81 -25.51 -0.17 -1.13 16 27 C -0.13 -1.11 6.27 -25.42 -0.16 -1.27 16 28 O -0.36 -4.14 10.69 -59.02 -0.63 -4.78 16 29 N -0.47 -13.49 5.74 -10.26 -0.06 -13.55 16 30 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 31 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 32 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.39 6.23 8.71 -40.82 -0.36 5.87 16 35 H 0.39 4.78 8.49 -40.82 -0.35 4.43 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.72 8.04 -51.93 -0.42 0.31 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -34.26 384.71 -12.05 -46.31 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -7.01 Total: 11.27 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -4.59 Total: 0.05 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.01 Total: -56.67 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.22 Total: -21.17 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.26 -12.05 -46.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.067 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds