Wall clock time and date at job start Wed Apr 1 2020 04:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86802 * 120.00038 * 2 1 4 4 H 1.48497 * 109.47041 * 269.99785 * 3 2 1 5 5 H 1.48496 * 109.47277 * 29.99731 * 3 2 1 6 6 H 1.48498 * 109.47301 * 150.00026 * 3 2 1 7 7 C 1.40028 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.41330 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.40606 * 119.78843 * 180.02562 * 9 7 2 11 11 C 1.38316 * 119.12937 * 180.02562 * 10 9 7 12 12 C 1.38682 * 118.66905 * 359.72473 * 11 10 9 13 13 C 1.39651 * 119.49806 * 0.52192 * 12 11 10 14 14 N 1.39251 * 119.57412 * 179.74597 * 13 12 11 15 15 C 1.34782 * 119.99564 * 185.40612 * 14 13 12 16 16 O 1.21575 * 120.00107 * 354.85545 * 15 14 13 17 17 N 1.34770 * 119.99346 * 174.85785 * 15 14 13 18 18 C 1.46508 * 119.99612 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.47185 * 180.02562 * 18 17 15 20 20 H 1.09009 * 110.61599 * 303.38804 * 19 18 17 21 21 C 1.54982 * 110.83919 * 180.22115 * 19 18 17 22 22 O 1.44993 * 101.85389 * 206.45063 * 21 19 18 23 23 C 1.42892 * 104.54789 * 35.22210 * 22 21 19 24 24 C 1.54113 * 110.68378 * 99.25102 * 23 22 21 25 25 C 1.54400 * 104.14448 * 155.76673 * 24 23 22 26 26 C 1.53927 * 106.63224 * 337.13211 * 25 24 23 27 27 C 1.54109 * 110.69993 * 213.60973 * 23 22 21 28 28 O 1.42506 * 109.85568 * 336.44716 * 23 22 21 29 29 N 1.31927 * 120.84547 * 359.46884 * 13 12 11 30 30 H 0.97003 * 120.00147 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.43459 * 359.97438 * 10 9 7 32 32 H 1.07999 * 120.66370 * 180.02562 * 11 10 9 33 33 H 1.08003 * 120.25569 * 180.26146 * 12 11 10 34 34 H 0.97000 * 120.00121 * 5.39978 * 14 13 12 35 35 H 0.96997 * 120.01085 * 359.97438 * 17 15 14 36 36 H 1.09001 * 109.46906 * 60.00101 * 18 17 15 37 37 H 1.09001 * 109.47114 * 299.99936 * 18 17 15 38 38 H 1.09001 * 110.95011 * 324.59166 * 21 19 18 39 39 H 1.09002 * 110.95106 * 88.27361 * 21 19 18 40 40 H 1.09000 * 110.49484 * 37.10506 * 24 23 22 41 41 H 1.08998 * 110.49529 * 274.43457 * 24 23 22 42 42 H 1.09000 * 110.03113 * 217.83315 * 25 24 23 43 43 H 1.09004 * 110.02632 * 96.42453 * 25 24 23 44 44 H 1.09001 * 110.02610 * 119.29375 * 26 25 24 45 45 H 1.08998 * 110.02948 * 240.66052 * 26 25 24 46 46 H 1.08996 * 110.49307 * 85.58144 * 27 23 22 47 47 H 1.09000 * 110.60984 * 322.96851 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3008 -2.4367 0.0016 10 6 2.0084 -3.6517 0.0027 11 6 1.3031 -4.8416 0.0032 12 6 -0.0829 -4.7934 0.0085 13 6 -0.7280 -3.5548 0.0021 14 7 -2.1196 -3.5047 0.0020 15 6 -2.7511 -2.3197 -0.1142 16 8 -2.1092 -1.2872 -0.1247 17 7 -4.0942 -2.2794 -0.2186 18 6 -4.7808 -0.9913 -0.3443 19 6 -6.2894 -1.2252 -0.4450 20 1 -6.5203 -1.8863 -1.2803 21 6 -7.0476 0.1193 -0.5849 22 8 -8.3451 -0.2113 -0.0285 23 6 -8.0591 -1.1298 1.0281 24 6 -8.0617 -0.4099 2.3907 25 6 -8.3697 -1.5295 3.4084 26 6 -9.0845 -2.6483 2.6295 27 6 -9.1868 -2.1712 1.1646 28 8 -6.8058 -1.7651 0.7911 29 7 -0.0358 -2.4317 0.0015 30 1 -0.4850 0.8401 -0.0004 31 1 3.0884 -3.6559 0.0023 32 1 1.8214 -5.7891 0.0045 33 1 -0.6591 -5.7069 0.0133 34 1 -2.6344 -4.3226 0.0854 35 1 -4.6063 -3.1031 -0.2105 36 1 -4.4314 -0.4793 -1.2409 37 1 -4.5661 -0.3782 0.5311 38 1 -6.5621 0.9029 -0.0032 39 1 -7.1344 0.4106 -1.6317 40 1 -8.8387 0.3542 2.4172 41 1 -7.0851 0.0304 2.5916 42 1 -9.0196 -1.1492 4.1964 43 1 -7.4426 -1.9079 3.8389 44 1 -8.5040 -3.5694 2.6824 45 1 -10.0808 -2.8113 3.0403 46 1 -9.0229 -3.0032 0.4799 47 1 -10.1579 -1.7117 0.9799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881149006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:56 Heat of formation + Delta-G solvation = -79.820224 kcal Electronic energy + Delta-G solvation = -30756.845995 eV Core-core repulsion = 26518.704856 eV Total energy + Delta-G solvation = -4238.141139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.97424 -41.06115 -39.50543 -37.67344 -36.51619 -35.90791 -35.16621 -34.81401 -32.21931 -31.83361 -30.58219 -29.84050 -28.10451 -27.43596 -26.36521 -23.88182 -23.16655 -22.83087 -21.71137 -21.40550 -21.35122 -19.78710 -18.87839 -18.48958 -18.05453 -17.52171 -16.77237 -16.61617 -16.29807 -16.23198 -16.15807 -15.92792 -15.59794 -15.40569 -14.97573 -14.70670 -14.59852 -14.34223 -14.09128 -13.81756 -13.72757 -13.65902 -13.33050 -13.02165 -12.85306 -12.75442 -12.70345 -12.53534 -12.29763 -12.24378 -12.17186 -12.13477 -11.75174 -11.49742 -11.42190 -11.16547 -10.87022 -10.85115 -10.50712 -9.93096 -9.83140 -9.09721 -8.76779 -8.00192 -6.39006 0.98447 1.30093 1.40687 1.52730 1.55349 1.76271 2.28385 2.30811 2.57259 2.85287 3.05725 3.23722 3.50042 3.51288 3.65724 3.73687 3.87081 4.02389 4.09399 4.28985 4.37291 4.42321 4.44997 4.46901 4.50276 4.64519 4.68706 4.69454 4.77082 4.85352 4.89306 4.93352 4.98407 4.98497 5.00017 5.08150 5.18687 5.21628 5.29470 5.41029 5.62650 5.69033 5.87068 5.94149 6.04363 6.13186 6.32384 6.43914 6.84004 7.09384 7.24744 8.00988 8.39951 8.60611 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.002678 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.376651 B =10454.408061 C =11731.831510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.684 5.684 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.085 0.915 9 C 0.236 3.764 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.346 4.346 13 C 0.365 3.635 14 N -0.662 5.662 15 C 0.658 3.342 16 O -0.515 6.515 17 N -0.733 5.733 18 C 0.154 3.846 19 C 0.048 3.952 20 H 0.111 0.889 21 C 0.024 3.976 22 O -0.375 6.375 23 C 0.241 3.759 24 C -0.147 4.147 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.123 4.123 28 O -0.373 6.373 29 N -0.507 5.507 30 H 0.269 0.731 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.417 0.583 35 H 0.404 0.596 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.391 -2.450 0.984 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.217 4.217 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.497 4.497 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.372 4.372 13 C 0.125 3.875 14 N -0.312 5.312 15 C 0.357 3.643 16 O -0.383 6.383 17 N -0.394 5.394 18 C 0.029 3.971 19 C -0.009 4.009 20 H 0.129 0.871 21 C -0.053 4.053 22 O -0.295 6.295 23 C 0.164 3.836 24 C -0.185 4.185 25 C -0.157 4.157 26 C -0.154 4.154 27 C -0.161 4.161 28 O -0.294 6.294 29 N -0.226 5.226 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.254 0.746 35 H 0.240 0.760 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.156 0.844 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.591 -0.563 1.042 21.624 hybrid contribution 0.719 -0.776 0.072 1.061 sum -20.872 -1.340 1.114 20.945 Atomic orbital electron populations 1.70562 1.07118 1.27806 1.24803 1.27049 0.96052 1.03953 0.94602 0.85336 0.79084 0.76925 0.79105 1.19060 1.19873 1.18062 1.19890 0.94398 0.90479 1.44932 0.89679 1.18895 0.87942 0.93431 0.88673 1.21806 0.99194 0.93838 1.20522 1.21024 0.93479 0.97349 0.93957 1.20912 0.95160 0.95542 1.25588 1.18834 0.84124 0.91091 0.93408 1.42387 1.03938 1.09026 1.75852 1.16677 0.82583 0.84946 0.80137 1.91378 1.63934 1.31539 1.51420 1.44845 1.03945 1.09814 1.80781 1.21096 0.88723 0.85247 1.02046 1.24108 0.92634 0.96070 0.88104 0.87114 1.24491 0.82160 0.95739 1.02862 1.89156 1.27928 1.62768 1.49660 1.23971 0.84764 0.86798 0.88082 1.22880 1.02562 0.98948 0.94129 1.22054 1.00683 0.95187 0.97814 1.22071 1.01569 0.98237 0.93539 1.22544 0.97520 0.97715 0.98319 1.88882 1.34951 1.64362 1.41202 1.68648 1.07224 1.25330 1.21435 0.92044 0.87768 0.84468 0.85099 0.74640 0.76016 0.90278 0.93169 0.90109 0.84397 0.88960 0.92037 0.89997 0.92523 0.91660 0.89596 0.90272 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.08 8.99 21.84 0.20 -39.88 16 2 C 0.01 0.50 5.50 85.29 0.47 0.97 16 3 Si 0.97 41.29 29.56 68.60 2.03 43.32 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.47 -27.04 9.14 23.46 0.21 -26.82 16 8 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 9 C 0.24 13.93 6.55 40.20 0.26 14.19 16 10 C -0.33 -17.01 9.83 22.87 0.22 -16.78 16 11 C -0.03 -1.50 10.15 22.39 0.23 -1.27 16 12 C -0.35 -15.06 9.95 22.72 0.23 -14.84 16 13 C 0.37 18.12 7.43 133.24 0.99 19.11 16 14 N -0.66 -26.40 5.39 -322.13 -1.74 -28.14 16 15 C 0.66 27.60 8.52 179.05 1.53 29.13 16 16 O -0.51 -27.40 12.11 -3.95 -0.05 -27.44 16 17 N -0.73 -21.72 5.55 -478.54 -2.65 -24.37 16 18 C 0.15 4.04 5.43 86.38 0.47 4.51 16 19 C 0.05 0.93 3.72 31.27 0.12 1.05 16 20 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 21 C 0.02 0.40 7.42 72.66 0.54 0.94 16 22 O -0.37 -7.45 11.11 -126.23 -1.40 -8.85 16 23 C 0.24 4.74 1.21 31.35 0.04 4.78 16 24 C -0.15 -2.76 6.27 31.45 0.20 -2.56 16 25 C -0.12 -1.95 6.81 31.38 0.21 -1.74 16 26 C -0.12 -1.67 6.81 31.38 0.21 -1.46 16 27 C -0.12 -1.95 6.27 31.45 0.20 -1.75 16 28 O -0.37 -8.33 10.69 -126.23 -1.35 -9.68 16 29 N -0.51 -29.82 5.74 -186.37 -1.07 -30.89 16 30 H 0.27 14.83 8.29 -92.71 -0.77 14.06 16 31 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 32 H 0.14 4.84 8.06 -2.91 -0.02 4.81 16 33 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 34 H 0.42 12.31 8.71 -92.71 -0.81 11.50 16 35 H 0.40 9.33 8.49 -92.71 -0.79 8.54 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 39 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 46 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -77.76 384.71 -0.50 -78.26 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: -0.59 Total: 40.21 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.12 Total: 7.47 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -5.26 Total: -123.29 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.80 Total: -45.98 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -77.76 -0.50 -78.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.556 kcal (2) G-P(sol) polarization free energy of solvation -77.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds