Wall clock time and date at job start Wed Apr 1 2020 04:46:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30741 * 1
3 3 Si 1.86801 * 120.00094 * 2 1
4 4 H 1.48495 * 109.47211 * 274.99457 * 3 2 1
5 5 H 1.48496 * 109.46938 * 34.99645 * 3 2 1
6 6 H 1.48504 * 109.47261 * 154.99401 * 3 2 1
7 7 C 1.40027 * 119.99986 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00466 * 174.84211 * 7 2 1
9 9 C 1.41335 * 120.00259 * 355.11442 * 7 2 1
10 10 C 1.40605 * 119.79218 * 184.60975 * 9 7 2
11 11 C 1.38314 * 119.13304 * 179.77317 * 10 9 7
12 12 C 1.38690 * 118.66473 * 0.49929 * 11 10 9
13 13 C 1.39645 * 119.49807 * 359.74370 * 12 11 10
14 14 N 1.39251 * 119.57344 * 180.02562 * 13 12 11
15 15 C 1.34773 * 120.00140 * 174.78323 * 14 13 12
16 16 O 1.21581 * 119.99804 * 5.20166 * 15 14 13
17 17 N 1.34769 * 120.00484 * 185.19893 * 15 14 13
18 18 C 1.46497 * 120.00437 * 180.02562 * 17 15 14
19 19 H 1.09004 * 109.55406 * 325.20418 * 18 17 15
20 20 C 1.53183 * 109.55813 * 85.51588 * 18 17 15
21 21 C 1.53089 * 109.21866 * 177.38528 * 20 18 17
22 22 O 1.43003 * 109.38446 * 301.84538 * 21 20 18
23 23 C 1.42198 * 114.28130 * 59.96816 * 22 21 20
24 24 C 1.54027 * 110.32827 * 178.38963 * 23 22 21
25 25 C 1.54602 * 103.89150 * 241.11752 * 24 23 22
26 26 O 1.44472 * 104.81591 * 23.91194 * 25 24 23
27 27 C 1.44546 * 105.36144 * 319.81516 * 26 25 24
28 28 C 1.52479 * 110.99680 * 300.77569 * 23 22 21
29 29 N 1.31924 * 120.84933 * 0.02562 * 13 12 11
30 30 H 0.96996 * 119.99993 * 0.02562 * 1 2 3
31 31 H 1.08002 * 120.43434 * 0.02562 * 10 9 7
32 32 H 1.07993 * 120.66965 * 180.21885 * 11 10 9
33 33 H 1.08006 * 120.25100 * 179.76527 * 12 11 10
34 34 H 0.96999 * 119.99807 * 354.78967 * 14 13 12
35 35 H 0.97008 * 119.99733 * 359.97438 * 17 15 14
36 36 H 1.09001 * 109.51280 * 297.30820 * 20 18 17
37 37 H 1.09000 * 109.51545 * 57.46370 * 20 18 17
38 38 H 1.09008 * 109.48258 * 181.87059 * 21 20 18
39 39 H 1.08998 * 109.49932 * 61.83121 * 21 20 18
40 40 H 1.08997 * 110.54228 * 359.71772 * 24 23 22
41 41 H 1.08999 * 110.54143 * 122.51797 * 24 23 22
42 42 H 1.08999 * 110.37096 * 142.74391 * 25 24 23
43 43 H 1.09003 * 110.37090 * 265.07751 * 25 24 23
44 44 H 1.08997 * 110.39095 * 281.20997 * 27 26 25
45 45 H 1.09000 * 110.38622 * 158.82708 * 27 26 25
46 46 H 1.08998 * 109.50350 * 295.90411 * 28 23 22
47 47 H 1.09000 * 109.50331 * 175.78728 * 28 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2414 1.6177 0.0000
4 1 2.3834 2.1074 -1.3947
5 1 1.4957 2.6198 0.8030
6 1 3.5878 1.4120 0.5918
7 6 2.0075 -1.2127 0.0005
8 1 3.0843 -1.2147 -0.0835
9 6 1.3048 -2.4344 0.1053
10 6 2.0161 -3.6433 0.2033
11 6 1.3146 -4.8306 0.3100
12 6 -0.0716 -4.7870 0.3060
13 6 -0.7205 -3.5549 0.2007
14 7 -2.1122 -3.5092 0.1970
15 6 -2.7475 -2.3206 0.2019
16 8 -2.1089 -1.2897 0.1140
17 7 -4.0905 -2.2746 0.3042
18 6 -4.7811 -0.9826 0.3089
19 1 -4.1668 -0.2425 0.8218
20 6 -5.0347 -0.5314 -1.1328
21 6 -5.8137 0.7863 -1.1188
22 8 -7.0431 0.6034 -0.4117
23 6 -6.8844 0.1974 0.9418
24 6 -8.2583 0.0668 1.6259
25 6 -8.1988 1.0967 2.7774
26 8 -7.2087 2.0620 2.3591
27 6 -6.1531 1.2871 1.7470
28 6 -6.1258 -1.1223 1.0310
29 7 -0.0319 -2.4337 0.1045
30 1 -0.4850 0.8400 -0.0004
31 1 3.0961 -3.6445 0.1994
32 1 1.8357 -5.7730 0.3902
33 1 -0.6449 -5.6989 0.3841
34 1 -2.6245 -4.3329 0.1911
35 1 -4.6000 -3.0972 0.3739
36 1 -4.0818 -0.3857 -1.6416
37 1 -5.6149 -1.2918 -1.6556
38 1 -6.0255 1.0944 -2.1428
39 1 -5.2201 1.5546 -0.6234
40 1 -9.0579 0.3180 0.9291
41 1 -8.3951 -0.9401 2.0200
42 1 -9.1680 1.5786 2.9058
43 1 -7.8892 0.6126 3.7037
44 1 -5.5217 0.8348 2.5117
45 1 -5.5575 1.9141 1.0836
46 1 -6.7117 -1.9114 0.5597
47 1 -5.9527 -1.3725 2.0776
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000881149434.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:36
Heat of formation + Delta-G solvation = -52.011560 kcal
Electronic energy + Delta-G solvation = -31467.416238 eV
Core-core repulsion = 27230.480972 eV
Total energy + Delta-G solvation = -4236.935265 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.95791 -39.45936 -38.06257 -37.44988 -35.06668 -33.95376 -32.99210 -32.69986
-31.31927 -30.26668 -29.75546 -28.83232 -27.07507 -25.51564 -24.06301 -23.56469
-22.30271 -21.43906 -20.96788 -19.89551 -19.60745 -18.09186 -17.45885 -16.99753
-16.41954 -16.07752 -15.94211 -15.63679 -15.15874 -14.81838 -14.63605 -14.51393
-14.39907 -14.16194 -13.71121 -13.55127 -13.26618 -13.07073 -12.90570 -12.78958
-12.27837 -12.12649 -11.95079 -11.91738 -11.67691 -11.44731 -11.29519 -11.17726
-10.97597 -10.93046 -10.64490 -10.46289 -10.39725 -10.06728 -9.93833 -9.66994
-9.61123 -9.11001 -9.01889 -8.53412 -7.94723 -7.20923 -6.94166 -6.11331
-4.38017 2.84361 3.12498 3.15538 3.18304 3.20503 3.28230 3.46697
3.71733 4.07724 4.14558 4.20446 4.48304 4.55487 4.71161 4.75049
4.80099 4.86058 4.95498 5.03648 5.10681 5.21128 5.25811 5.34491
5.42548 5.48760 5.56151 5.64990 5.71728 5.74284 5.88654 6.02811
6.07236 6.12905 6.23681 6.47457 6.48304 6.61106 6.79831 6.85654
6.94137 7.10184 7.24171 7.35414 7.62459 7.74145 7.82299 8.17792
8.30380 8.65187 8.80622 9.07062 9.57272 10.27354 10.50062
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.012295 B = 0.003206 C = 0.002741
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2276.840189 B = 8731.169544 C =10213.323919
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.649 5.649
2 C 0.058 3.942
3 Si 0.893 3.107
4 H -0.272 1.272
5 H -0.278 1.278
6 H -0.263 1.263
7 C -0.425 4.425
8 H 0.082 0.918
9 C 0.271 3.729
10 C -0.306 4.306
11 C -0.036 4.036
12 C -0.359 4.359
13 C 0.387 3.613
14 N -0.673 5.673
15 C 0.663 3.337
16 O -0.461 6.461
17 N -0.755 5.755
18 C 0.170 3.830
19 H 0.090 0.910
20 C -0.167 4.167
21 C 0.059 3.941
22 O -0.364 6.364
23 C 0.095 3.905
24 C -0.142 4.142
25 C 0.044 3.956
26 O -0.370 6.370
27 C 0.018 3.982
28 C -0.145 4.145
29 N -0.471 5.471
30 H 0.271 0.729
31 H 0.096 0.904
32 H 0.095 0.905
33 H 0.090 0.910
34 H 0.394 0.606
35 H 0.384 0.616
36 H 0.087 0.913
37 H 0.069 0.931
38 H 0.099 0.901
39 H 0.057 0.943
40 H 0.090 0.910
41 H 0.088 0.912
42 H 0.093 0.907
43 H 0.061 0.939
44 H 0.072 0.928
45 H 0.101 0.899
46 H 0.079 0.921
47 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.447 -0.840 2.212 17.606
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.267 5.267
2 C -0.172 4.172
3 Si 0.717 3.283
4 H -0.198 1.198
5 H -0.203 1.203
6 H -0.187 1.187
7 C -0.456 4.456
8 H 0.100 0.900
9 C 0.146 3.854
10 C -0.329 4.329
11 C -0.060 4.060
12 C -0.385 4.385
13 C 0.147 3.853
14 N -0.322 5.322
15 C 0.362 3.638
16 O -0.325 6.325
17 N -0.414 5.414
18 C 0.063 3.937
19 H 0.108 0.892
20 C -0.206 4.206
21 C -0.018 4.018
22 O -0.283 6.283
23 C 0.054 3.946
24 C -0.180 4.180
25 C -0.033 4.033
26 O -0.288 6.288
27 C -0.059 4.059
28 C -0.184 4.184
29 N -0.190 5.190
30 H 0.082 0.918
31 H 0.114 0.886
32 H 0.114 0.886
33 H 0.108 0.892
34 H 0.227 0.773
35 H 0.216 0.784
36 H 0.105 0.895
37 H 0.088 0.912
38 H 0.117 0.883
39 H 0.076 0.924
40 H 0.109 0.891
41 H 0.107 0.893
42 H 0.112 0.888
43 H 0.080 0.920
44 H 0.091 0.909
45 H 0.119 0.881
46 H 0.097 0.903
47 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -17.629 1.439 2.020 17.803
hybrid contribution 0.599 -1.436 0.114 1.561
sum -17.030 0.002 2.134 17.163
Atomic orbital electron populations
1.70355 1.05594 1.27175 1.23604 1.26176 0.95128 1.00485 0.95388
0.86549 0.80760 0.82140 0.78824 1.19769 1.20300 1.18707 1.19571
0.94286 0.89468 1.42258 0.90008 1.18393 0.87136 0.91914 0.87959
1.21628 0.98555 0.93755 1.18993 1.20546 0.93140 0.96508 0.95844
1.20435 0.94739 0.95092 1.28199 1.18332 0.82403 0.90973 0.93603
1.42563 1.05240 1.07221 1.77128 1.16455 0.81301 0.85549 0.80529
1.91388 1.62461 1.30124 1.48479 1.45339 1.05795 1.07879 1.82383
1.20615 0.91502 0.86400 0.95143 0.89169 1.22642 1.01863 0.97849
0.98240 1.22691 0.85415 0.96477 0.97178 1.87867 1.30192 1.88176
1.22104 1.22271 0.95404 0.93051 0.83863 1.22939 0.96598 1.00705
0.97717 1.23468 0.93467 0.90119 0.96234 1.89179 1.31450 1.29793
1.78391 1.24129 0.91023 0.94034 0.96719 1.22402 0.96255 0.97608
1.02099 1.68684 1.06982 1.23046 1.20294 0.91771 0.88598 0.88644
0.89211 0.77284 0.78392 0.89452 0.91221 0.88338 0.92446 0.89100
0.89340 0.88830 0.92039 0.90949 0.88122 0.90272 0.90012
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.65 -17.86 9.00 55.55 0.50 -17.36 16
2 C 0.06 1.52 5.49 -17.35 -0.10 1.42 16
3 Si 0.89 19.27 29.56 -169.99 -5.03 14.25 16
4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16
5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16
6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16
7 C -0.43 -11.72 9.13 -37.73 -0.34 -12.07 16
8 H 0.08 2.12 7.85 -52.48 -0.41 1.70 16
9 C 0.27 7.63 6.55 -85.00 -0.56 7.08 16
10 C -0.31 -7.73 9.83 -38.66 -0.38 -8.11 16
11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16
12 C -0.36 -8.03 9.95 -38.89 -0.39 -8.42 16
13 C 0.39 9.39 7.43 -154.99 -1.15 8.24 16
14 N -0.67 -13.10 5.39 -15.79 -0.09 -13.18 16
15 C 0.66 13.13 8.49 -86.93 -0.74 12.39 16
16 O -0.46 -11.35 11.77 5.29 0.06 -11.29 16
17 N -0.76 -10.57 5.09 -58.45 -0.30 -10.86 16
18 C 0.17 2.19 2.34 -67.70 -0.16 2.04 16
19 H 0.09 1.41 7.03 -51.93 -0.36 1.04 16
20 C -0.17 -2.11 5.70 -26.59 -0.15 -2.27 16
21 C 0.06 0.68 6.60 37.20 0.25 0.92 16
22 O -0.36 -4.33 10.18 -35.23 -0.36 -4.68 16
23 C 0.09 0.98 1.04 -89.85 -0.09 0.89 16
24 C -0.14 -1.18 6.52 -25.35 -0.17 -1.34 16
25 C 0.04 0.38 7.65 38.00 0.29 0.67 16
26 O -0.37 -4.56 11.65 -35.23 -0.41 -4.97 16
27 C 0.02 0.21 5.92 37.66 0.22 0.43 16
28 C -0.15 -1.42 4.05 -26.86 -0.11 -1.53 16
29 N -0.47 -13.21 5.75 -10.26 -0.06 -13.27 16
30 H 0.27 6.98 8.29 -40.82 -0.34 6.65 16
31 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16
32 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16
33 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16
34 H 0.39 5.86 8.71 -40.82 -0.36 5.51 16
35 H 0.38 4.11 8.63 -40.82 -0.35 3.75 16
36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16
37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
38 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16
39 H 0.06 0.67 6.24 -51.93 -0.32 0.34 16
40 H 0.09 0.77 7.99 -51.93 -0.41 0.35 16
41 H 0.09 0.56 7.71 -51.93 -0.40 0.16 16
42 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16
43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
44 H 0.07 0.81 7.76 -51.93 -0.40 0.40 16
45 H 0.10 1.21 6.03 -51.93 -0.31 0.90 16
46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
47 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16
LS Contribution 373.85 15.07 5.63 5.63
Total: -1.00 -33.93 373.85 -10.71 -44.63
By element:
Atomic # 1 Polarization: 18.69 SS G_CDS: -6.70 Total: 11.99 kcal
Atomic # 6 Polarization: 3.09 SS G_CDS: -3.97 Total: -0.88 kcal
Atomic # 7 Polarization: -54.74 SS G_CDS: 0.06 Total: -54.68 kcal
Atomic # 8 Polarization: -20.24 SS G_CDS: -0.71 Total: -20.95 kcal
Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -33.93 -10.71 -44.63 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881149434.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.378 kcal
(2) G-P(sol) polarization free energy of solvation -33.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.304 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.634 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.012 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds