Wall clock time and date at job start Wed Apr 1 2020 04:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86801 * 120.00094 * 2 1 4 4 H 1.48495 * 109.47211 * 274.99457 * 3 2 1 5 5 H 1.48496 * 109.46938 * 34.99645 * 3 2 1 6 6 H 1.48504 * 109.47261 * 154.99401 * 3 2 1 7 7 C 1.40027 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00466 * 174.84211 * 7 2 1 9 9 C 1.41335 * 120.00259 * 355.11442 * 7 2 1 10 10 C 1.40605 * 119.79218 * 184.60975 * 9 7 2 11 11 C 1.38314 * 119.13304 * 179.77317 * 10 9 7 12 12 C 1.38690 * 118.66473 * 0.49929 * 11 10 9 13 13 C 1.39645 * 119.49807 * 359.74370 * 12 11 10 14 14 N 1.39251 * 119.57344 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00140 * 174.78323 * 14 13 12 16 16 O 1.21581 * 119.99804 * 5.20166 * 15 14 13 17 17 N 1.34769 * 120.00484 * 185.19893 * 15 14 13 18 18 C 1.46497 * 120.00437 * 180.02562 * 17 15 14 19 19 H 1.09004 * 109.55406 * 325.20418 * 18 17 15 20 20 C 1.53183 * 109.55813 * 85.51588 * 18 17 15 21 21 C 1.53089 * 109.21866 * 177.38528 * 20 18 17 22 22 O 1.43003 * 109.38446 * 301.84538 * 21 20 18 23 23 C 1.42198 * 114.28130 * 59.96816 * 22 21 20 24 24 C 1.54027 * 110.32827 * 178.38963 * 23 22 21 25 25 C 1.54602 * 103.89150 * 241.11752 * 24 23 22 26 26 O 1.44472 * 104.81591 * 23.91194 * 25 24 23 27 27 C 1.44546 * 105.36144 * 319.81516 * 26 25 24 28 28 C 1.52479 * 110.99680 * 300.77569 * 23 22 21 29 29 N 1.31924 * 120.84933 * 0.02562 * 13 12 11 30 30 H 0.96996 * 119.99993 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.43434 * 0.02562 * 10 9 7 32 32 H 1.07993 * 120.66965 * 180.21885 * 11 10 9 33 33 H 1.08006 * 120.25100 * 179.76527 * 12 11 10 34 34 H 0.96999 * 119.99807 * 354.78967 * 14 13 12 35 35 H 0.97008 * 119.99733 * 359.97438 * 17 15 14 36 36 H 1.09001 * 109.51280 * 297.30820 * 20 18 17 37 37 H 1.09000 * 109.51545 * 57.46370 * 20 18 17 38 38 H 1.09008 * 109.48258 * 181.87059 * 21 20 18 39 39 H 1.08998 * 109.49932 * 61.83121 * 21 20 18 40 40 H 1.08997 * 110.54228 * 359.71772 * 24 23 22 41 41 H 1.08999 * 110.54143 * 122.51797 * 24 23 22 42 42 H 1.08999 * 110.37096 * 142.74391 * 25 24 23 43 43 H 1.09003 * 110.37090 * 265.07751 * 25 24 23 44 44 H 1.08997 * 110.39095 * 281.20997 * 27 26 25 45 45 H 1.09000 * 110.38622 * 158.82708 * 27 26 25 46 46 H 1.08998 * 109.50350 * 295.90411 * 28 23 22 47 47 H 1.09000 * 109.50331 * 175.78728 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3834 2.1074 -1.3947 5 1 1.4957 2.6198 0.8030 6 1 3.5878 1.4120 0.5918 7 6 2.0075 -1.2127 0.0005 8 1 3.0843 -1.2147 -0.0835 9 6 1.3048 -2.4344 0.1053 10 6 2.0161 -3.6433 0.2033 11 6 1.3146 -4.8306 0.3100 12 6 -0.0716 -4.7870 0.3060 13 6 -0.7205 -3.5549 0.2007 14 7 -2.1122 -3.5092 0.1970 15 6 -2.7475 -2.3206 0.2019 16 8 -2.1089 -1.2897 0.1140 17 7 -4.0905 -2.2746 0.3042 18 6 -4.7811 -0.9826 0.3089 19 1 -4.1668 -0.2425 0.8218 20 6 -5.0347 -0.5314 -1.1328 21 6 -5.8137 0.7863 -1.1188 22 8 -7.0431 0.6034 -0.4117 23 6 -6.8844 0.1974 0.9418 24 6 -8.2583 0.0668 1.6259 25 6 -8.1988 1.0967 2.7774 26 8 -7.2087 2.0620 2.3591 27 6 -6.1531 1.2871 1.7470 28 6 -6.1258 -1.1223 1.0310 29 7 -0.0319 -2.4337 0.1045 30 1 -0.4850 0.8400 -0.0004 31 1 3.0961 -3.6445 0.1994 32 1 1.8357 -5.7730 0.3902 33 1 -0.6449 -5.6989 0.3841 34 1 -2.6245 -4.3329 0.1911 35 1 -4.6000 -3.0972 0.3739 36 1 -4.0818 -0.3857 -1.6416 37 1 -5.6149 -1.2918 -1.6556 38 1 -6.0255 1.0944 -2.1428 39 1 -5.2201 1.5546 -0.6234 40 1 -9.0579 0.3180 0.9291 41 1 -8.3951 -0.9401 2.0200 42 1 -9.1680 1.5786 2.9058 43 1 -7.8892 0.6126 3.7037 44 1 -5.5217 0.8348 2.5117 45 1 -5.5575 1.9141 1.0836 46 1 -6.7117 -1.9114 0.5597 47 1 -5.9527 -1.3725 2.0776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881149434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:36 Heat of formation + Delta-G solvation = -52.011560 kcal Electronic energy + Delta-G solvation = -31467.416238 eV Core-core repulsion = 27230.480972 eV Total energy + Delta-G solvation = -4236.935265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.95791 -39.45936 -38.06257 -37.44988 -35.06668 -33.95376 -32.99210 -32.69986 -31.31927 -30.26668 -29.75546 -28.83232 -27.07507 -25.51564 -24.06301 -23.56469 -22.30271 -21.43906 -20.96788 -19.89551 -19.60745 -18.09186 -17.45885 -16.99753 -16.41954 -16.07752 -15.94211 -15.63679 -15.15874 -14.81838 -14.63605 -14.51393 -14.39907 -14.16194 -13.71121 -13.55127 -13.26618 -13.07073 -12.90570 -12.78958 -12.27837 -12.12649 -11.95079 -11.91738 -11.67691 -11.44731 -11.29519 -11.17726 -10.97597 -10.93046 -10.64490 -10.46289 -10.39725 -10.06728 -9.93833 -9.66994 -9.61123 -9.11001 -9.01889 -8.53412 -7.94723 -7.20923 -6.94166 -6.11331 -4.38017 2.84361 3.12498 3.15538 3.18304 3.20503 3.28230 3.46697 3.71733 4.07724 4.14558 4.20446 4.48304 4.55487 4.71161 4.75049 4.80099 4.86058 4.95498 5.03648 5.10681 5.21128 5.25811 5.34491 5.42548 5.48760 5.56151 5.64990 5.71728 5.74284 5.88654 6.02811 6.07236 6.12905 6.23681 6.47457 6.48304 6.61106 6.79831 6.85654 6.94137 7.10184 7.24171 7.35414 7.62459 7.74145 7.82299 8.17792 8.30380 8.65187 8.80622 9.07062 9.57272 10.27354 10.50062 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.003206 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.840189 B = 8731.169544 C =10213.323919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.387 3.613 14 N -0.673 5.673 15 C 0.663 3.337 16 O -0.461 6.461 17 N -0.755 5.755 18 C 0.170 3.830 19 H 0.090 0.910 20 C -0.167 4.167 21 C 0.059 3.941 22 O -0.364 6.364 23 C 0.095 3.905 24 C -0.142 4.142 25 C 0.044 3.956 26 O -0.370 6.370 27 C 0.018 3.982 28 C -0.145 4.145 29 N -0.471 5.471 30 H 0.271 0.729 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.394 0.606 35 H 0.384 0.616 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.447 -0.840 2.212 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.267 5.267 2 C -0.172 4.172 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.329 4.329 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.147 3.853 14 N -0.322 5.322 15 C 0.362 3.638 16 O -0.325 6.325 17 N -0.414 5.414 18 C 0.063 3.937 19 H 0.108 0.892 20 C -0.206 4.206 21 C -0.018 4.018 22 O -0.283 6.283 23 C 0.054 3.946 24 C -0.180 4.180 25 C -0.033 4.033 26 O -0.288 6.288 27 C -0.059 4.059 28 C -0.184 4.184 29 N -0.190 5.190 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.227 0.773 35 H 0.216 0.784 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.097 0.903 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.629 1.439 2.020 17.803 hybrid contribution 0.599 -1.436 0.114 1.561 sum -17.030 0.002 2.134 17.163 Atomic orbital electron populations 1.70355 1.05594 1.27175 1.23604 1.26176 0.95128 1.00485 0.95388 0.86549 0.80760 0.82140 0.78824 1.19769 1.20300 1.18707 1.19571 0.94286 0.89468 1.42258 0.90008 1.18393 0.87136 0.91914 0.87959 1.21628 0.98555 0.93755 1.18993 1.20546 0.93140 0.96508 0.95844 1.20435 0.94739 0.95092 1.28199 1.18332 0.82403 0.90973 0.93603 1.42563 1.05240 1.07221 1.77128 1.16455 0.81301 0.85549 0.80529 1.91388 1.62461 1.30124 1.48479 1.45339 1.05795 1.07879 1.82383 1.20615 0.91502 0.86400 0.95143 0.89169 1.22642 1.01863 0.97849 0.98240 1.22691 0.85415 0.96477 0.97178 1.87867 1.30192 1.88176 1.22104 1.22271 0.95404 0.93051 0.83863 1.22939 0.96598 1.00705 0.97717 1.23468 0.93467 0.90119 0.96234 1.89179 1.31450 1.29793 1.78391 1.24129 0.91023 0.94034 0.96719 1.22402 0.96255 0.97608 1.02099 1.68684 1.06982 1.23046 1.20294 0.91771 0.88598 0.88644 0.89211 0.77284 0.78392 0.89452 0.91221 0.88338 0.92446 0.89100 0.89340 0.88830 0.92039 0.90949 0.88122 0.90272 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.86 9.00 55.55 0.50 -17.36 16 2 C 0.06 1.52 5.49 -17.35 -0.10 1.42 16 3 Si 0.89 19.27 29.56 -169.99 -5.03 14.25 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.43 -11.72 9.13 -37.73 -0.34 -12.07 16 8 H 0.08 2.12 7.85 -52.48 -0.41 1.70 16 9 C 0.27 7.63 6.55 -85.00 -0.56 7.08 16 10 C -0.31 -7.73 9.83 -38.66 -0.38 -8.11 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.36 -8.03 9.95 -38.89 -0.39 -8.42 16 13 C 0.39 9.39 7.43 -154.99 -1.15 8.24 16 14 N -0.67 -13.10 5.39 -15.79 -0.09 -13.18 16 15 C 0.66 13.13 8.49 -86.93 -0.74 12.39 16 16 O -0.46 -11.35 11.77 5.29 0.06 -11.29 16 17 N -0.76 -10.57 5.09 -58.45 -0.30 -10.86 16 18 C 0.17 2.19 2.34 -67.70 -0.16 2.04 16 19 H 0.09 1.41 7.03 -51.93 -0.36 1.04 16 20 C -0.17 -2.11 5.70 -26.59 -0.15 -2.27 16 21 C 0.06 0.68 6.60 37.20 0.25 0.92 16 22 O -0.36 -4.33 10.18 -35.23 -0.36 -4.68 16 23 C 0.09 0.98 1.04 -89.85 -0.09 0.89 16 24 C -0.14 -1.18 6.52 -25.35 -0.17 -1.34 16 25 C 0.04 0.38 7.65 38.00 0.29 0.67 16 26 O -0.37 -4.56 11.65 -35.23 -0.41 -4.97 16 27 C 0.02 0.21 5.92 37.66 0.22 0.43 16 28 C -0.15 -1.42 4.05 -26.86 -0.11 -1.53 16 29 N -0.47 -13.21 5.75 -10.26 -0.06 -13.27 16 30 H 0.27 6.98 8.29 -40.82 -0.34 6.65 16 31 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 34 H 0.39 5.86 8.71 -40.82 -0.36 5.51 16 35 H 0.38 4.11 8.63 -40.82 -0.35 3.75 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 39 H 0.06 0.67 6.24 -51.93 -0.32 0.34 16 40 H 0.09 0.77 7.99 -51.93 -0.41 0.35 16 41 H 0.09 0.56 7.71 -51.93 -0.40 0.16 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.81 7.76 -51.93 -0.40 0.40 16 45 H 0.10 1.21 6.03 -51.93 -0.31 0.90 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -33.93 373.85 -10.71 -44.63 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -6.70 Total: 11.99 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -3.97 Total: -0.88 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.06 Total: -54.68 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.71 Total: -20.95 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.93 -10.71 -44.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.378 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds