Wall clock time and date at job start Wed Apr 1 2020 04:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86801 * 120.00094 * 2 1 4 4 H 1.48495 * 109.47211 * 274.99457 * 3 2 1 5 5 H 1.48496 * 109.46938 * 34.99645 * 3 2 1 6 6 H 1.48504 * 109.47261 * 154.99401 * 3 2 1 7 7 C 1.40027 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00466 * 174.84211 * 7 2 1 9 9 C 1.41335 * 120.00259 * 355.11442 * 7 2 1 10 10 C 1.40605 * 119.79218 * 184.60975 * 9 7 2 11 11 C 1.38314 * 119.13304 * 179.77317 * 10 9 7 12 12 C 1.38690 * 118.66473 * 0.49929 * 11 10 9 13 13 C 1.39645 * 119.49807 * 359.74370 * 12 11 10 14 14 N 1.39251 * 119.57344 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00140 * 174.78323 * 14 13 12 16 16 O 1.21581 * 119.99804 * 5.20166 * 15 14 13 17 17 N 1.34769 * 120.00484 * 185.19893 * 15 14 13 18 18 C 1.46497 * 120.00437 * 180.02562 * 17 15 14 19 19 H 1.09004 * 109.55406 * 325.20418 * 18 17 15 20 20 C 1.53183 * 109.55813 * 85.51588 * 18 17 15 21 21 C 1.53089 * 109.21866 * 177.38528 * 20 18 17 22 22 O 1.43003 * 109.38446 * 301.84538 * 21 20 18 23 23 C 1.42198 * 114.28130 * 59.96816 * 22 21 20 24 24 C 1.54027 * 110.32827 * 178.38963 * 23 22 21 25 25 C 1.54602 * 103.89150 * 241.11752 * 24 23 22 26 26 O 1.44472 * 104.81591 * 23.91194 * 25 24 23 27 27 C 1.44546 * 105.36144 * 319.81516 * 26 25 24 28 28 C 1.52479 * 110.99680 * 300.77569 * 23 22 21 29 29 N 1.31924 * 120.84933 * 0.02562 * 13 12 11 30 30 H 0.96996 * 119.99993 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.43434 * 0.02562 * 10 9 7 32 32 H 1.07993 * 120.66965 * 180.21885 * 11 10 9 33 33 H 1.08006 * 120.25100 * 179.76527 * 12 11 10 34 34 H 0.96999 * 119.99807 * 354.78967 * 14 13 12 35 35 H 0.97008 * 119.99733 * 359.97438 * 17 15 14 36 36 H 1.09001 * 109.51280 * 297.30820 * 20 18 17 37 37 H 1.09000 * 109.51545 * 57.46370 * 20 18 17 38 38 H 1.09008 * 109.48258 * 181.87059 * 21 20 18 39 39 H 1.08998 * 109.49932 * 61.83121 * 21 20 18 40 40 H 1.08997 * 110.54228 * 359.71772 * 24 23 22 41 41 H 1.08999 * 110.54143 * 122.51797 * 24 23 22 42 42 H 1.08999 * 110.37096 * 142.74391 * 25 24 23 43 43 H 1.09003 * 110.37090 * 265.07751 * 25 24 23 44 44 H 1.08997 * 110.39095 * 281.20997 * 27 26 25 45 45 H 1.09000 * 110.38622 * 158.82708 * 27 26 25 46 46 H 1.08998 * 109.50350 * 295.90411 * 28 23 22 47 47 H 1.09000 * 109.50331 * 175.78728 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3834 2.1074 -1.3947 5 1 1.4957 2.6198 0.8030 6 1 3.5878 1.4120 0.5918 7 6 2.0075 -1.2127 0.0005 8 1 3.0843 -1.2147 -0.0835 9 6 1.3048 -2.4344 0.1053 10 6 2.0161 -3.6433 0.2033 11 6 1.3146 -4.8306 0.3100 12 6 -0.0716 -4.7870 0.3060 13 6 -0.7205 -3.5549 0.2007 14 7 -2.1122 -3.5092 0.1970 15 6 -2.7475 -2.3206 0.2019 16 8 -2.1089 -1.2897 0.1140 17 7 -4.0905 -2.2746 0.3042 18 6 -4.7811 -0.9826 0.3089 19 1 -4.1668 -0.2425 0.8218 20 6 -5.0347 -0.5314 -1.1328 21 6 -5.8137 0.7863 -1.1188 22 8 -7.0431 0.6034 -0.4117 23 6 -6.8844 0.1974 0.9418 24 6 -8.2583 0.0668 1.6259 25 6 -8.1988 1.0967 2.7774 26 8 -7.2087 2.0620 2.3591 27 6 -6.1531 1.2871 1.7470 28 6 -6.1258 -1.1223 1.0310 29 7 -0.0319 -2.4337 0.1045 30 1 -0.4850 0.8400 -0.0004 31 1 3.0961 -3.6445 0.1994 32 1 1.8357 -5.7730 0.3902 33 1 -0.6449 -5.6989 0.3841 34 1 -2.6245 -4.3329 0.1911 35 1 -4.6000 -3.0972 0.3739 36 1 -4.0818 -0.3857 -1.6416 37 1 -5.6149 -1.2918 -1.6556 38 1 -6.0255 1.0944 -2.1428 39 1 -5.2201 1.5546 -0.6234 40 1 -9.0579 0.3180 0.9291 41 1 -8.3951 -0.9401 2.0200 42 1 -9.1680 1.5786 2.9058 43 1 -7.8892 0.6126 3.7037 44 1 -5.5217 0.8348 2.5117 45 1 -5.5575 1.9141 1.0836 46 1 -6.7117 -1.9114 0.5597 47 1 -5.9527 -1.3725 2.0776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881149434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:34 Heat of formation + Delta-G solvation = -75.876502 kcal Electronic energy + Delta-G solvation = -31468.451099 eV Core-core repulsion = 27230.480972 eV Total energy + Delta-G solvation = -4237.970127 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.89315 -40.99159 -39.57628 -38.61094 -36.36893 -35.68387 -34.81810 -33.55852 -32.59761 -32.14717 -30.62759 -30.49362 -28.07805 -27.37996 -25.08727 -24.53927 -23.73287 -23.11499 -22.23869 -21.32579 -20.65614 -19.78009 -18.86477 -18.18022 -17.88112 -17.18911 -16.84253 -16.59544 -16.49898 -16.28960 -16.23996 -15.82910 -15.65312 -15.49541 -15.25822 -14.77505 -14.67549 -14.42784 -14.18442 -13.95859 -13.68765 -13.65215 -13.06727 -12.93367 -12.84531 -12.70931 -12.55349 -12.45535 -12.32151 -12.30407 -12.15854 -11.95923 -11.77644 -11.48389 -11.29302 -10.98561 -10.85032 -10.79565 -10.45422 -9.91005 -9.82291 -9.09285 -8.76876 -8.02273 -6.39523 0.97841 1.29454 1.39197 1.50161 1.54076 1.77485 2.26617 2.56945 2.61778 2.93688 3.04524 3.32289 3.37343 3.68108 3.77243 3.82927 3.93408 4.07051 4.08932 4.14322 4.24826 4.28937 4.36854 4.37719 4.51884 4.63782 4.70529 4.74323 4.78784 4.80726 4.85483 4.88951 4.97983 4.99656 5.04652 5.08112 5.08775 5.17315 5.29838 5.67233 5.69023 5.72313 5.87318 5.94000 6.05333 6.21676 6.33280 6.44068 6.83311 7.09025 7.28207 8.03805 8.39451 8.58883 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.003206 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.840189 B = 8731.169544 C =10213.323919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.682 5.682 2 C 0.013 3.987 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.467 4.467 8 H 0.084 0.916 9 C 0.237 3.763 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.346 4.346 13 C 0.365 3.635 14 N -0.661 5.661 15 C 0.657 3.343 16 O -0.512 6.512 17 N -0.731 5.731 18 C 0.169 3.831 19 H 0.057 0.943 20 C -0.158 4.158 21 C 0.063 3.937 22 O -0.370 6.370 23 C 0.091 3.909 24 C -0.134 4.134 25 C 0.036 3.964 26 O -0.397 6.397 27 C 0.014 3.986 28 C -0.132 4.132 29 N -0.506 5.506 30 H 0.268 0.732 31 H 0.103 0.897 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.417 0.583 35 H 0.406 0.594 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.486 -2.767 2.753 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.301 5.301 2 C -0.213 4.213 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.498 4.498 8 H 0.102 0.898 9 C 0.112 3.888 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.371 4.371 13 C 0.125 3.875 14 N -0.312 5.312 15 C 0.355 3.645 16 O -0.380 6.380 17 N -0.390 5.390 18 C 0.063 3.937 19 H 0.075 0.925 20 C -0.197 4.197 21 C -0.014 4.014 22 O -0.289 6.289 23 C 0.051 3.949 24 C -0.172 4.172 25 C -0.040 4.040 26 O -0.316 6.316 27 C -0.063 4.063 28 C -0.170 4.170 29 N -0.226 5.226 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.254 0.746 35 H 0.242 0.758 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.121 0.879 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.746 -0.560 2.568 19.920 hybrid contribution 1.133 -1.006 -0.029 1.515 sum -18.613 -1.565 2.539 18.850 Atomic orbital electron populations 1.70554 1.07030 1.27669 1.24864 1.26986 0.95996 1.03751 0.94595 0.85396 0.79361 0.77256 0.78943 1.19137 1.19965 1.17937 1.19872 0.94621 0.90591 1.44677 0.89796 1.18871 0.87960 0.93302 0.88690 1.21804 0.99169 0.94107 1.20348 1.21026 0.93577 0.97253 0.93987 1.20918 0.95079 0.95881 1.25263 1.18833 0.84225 0.91094 0.93308 1.42396 1.03825 1.08399 1.76584 1.16733 0.82768 0.84901 0.80074 1.91384 1.64141 1.31858 1.50597 1.45014 1.03834 1.09415 1.80754 1.20672 0.92575 0.84992 0.95489 0.92482 1.22515 1.00416 0.99013 0.97755 1.22647 0.85290 0.95472 0.97959 1.87866 1.29941 1.88270 1.22826 1.22430 0.96792 0.92579 0.83120 1.22973 0.94845 1.02119 0.97232 1.23741 0.93375 0.89930 0.96920 1.89147 1.32309 1.31495 1.78695 1.24119 0.91162 0.94253 0.96718 1.22336 0.94011 0.98029 1.02588 1.68648 1.07283 1.25279 1.21349 0.92151 0.87887 0.84529 0.85022 0.74573 0.75848 0.92973 0.89791 0.86925 0.93457 0.88990 0.86555 0.87255 0.90629 0.91080 0.89774 0.87859 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -39.66 9.00 21.84 0.20 -39.47 16 2 C 0.01 0.69 5.49 85.29 0.47 1.16 16 3 Si 0.97 41.34 29.56 68.60 2.03 43.37 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.47 -26.92 9.13 23.47 0.21 -26.71 16 8 H 0.08 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.24 13.85 6.55 40.20 0.26 14.11 16 10 C -0.33 -16.88 9.83 22.87 0.22 -16.65 16 11 C -0.03 -1.49 10.15 22.40 0.23 -1.26 16 12 C -0.35 -14.66 9.95 22.72 0.23 -14.43 16 13 C 0.37 17.65 7.43 133.24 0.99 18.64 16 14 N -0.66 -25.11 5.39 -322.14 -1.74 -26.84 16 15 C 0.66 26.20 8.49 179.06 1.52 27.72 16 16 O -0.51 -26.46 11.77 -3.97 -0.05 -26.51 16 17 N -0.73 -19.68 5.09 -457.10 -2.33 -22.01 16 18 C 0.17 4.32 2.34 45.14 0.11 4.42 16 19 H 0.06 1.88 7.03 -2.39 -0.02 1.87 16 20 C -0.16 -4.03 5.70 30.69 0.18 -3.85 16 21 C 0.06 1.45 6.60 72.01 0.48 1.93 16 22 O -0.37 -8.33 10.18 -148.98 -1.52 -9.84 16 23 C 0.09 1.75 1.04 -10.29 -0.01 1.74 16 24 C -0.13 -1.82 6.52 31.49 0.21 -1.62 16 25 C 0.04 0.55 7.65 72.53 0.55 1.11 16 26 O -0.40 -9.63 11.65 -148.98 -1.74 -11.37 16 27 C 0.01 0.34 5.92 72.31 0.43 0.76 16 28 C -0.13 -2.26 4.05 30.51 0.12 -2.13 16 29 N -0.51 -29.26 5.75 -186.37 -1.07 -30.33 16 30 H 0.27 14.73 8.29 -92.71 -0.77 13.96 16 31 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 32 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 33 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 34 H 0.42 11.32 8.71 -92.71 -0.81 10.51 16 35 H 0.41 7.52 8.63 -92.70 -0.80 6.72 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.05 1.18 6.24 -2.39 -0.01 1.17 16 40 H 0.09 1.27 7.99 -2.39 -0.02 1.25 16 41 H 0.12 0.95 7.71 -2.39 -0.02 0.93 16 42 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 1.62 7.76 -2.39 -0.02 1.60 16 45 H 0.08 2.18 6.03 -2.39 -0.01 2.16 16 46 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.09 1.44 8.03 -2.39 -0.02 1.42 16 Total: -1.00 -78.81 373.85 -0.60 -79.41 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -0.59 Total: 38.66 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 6.19 Total: 4.93 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -4.94 Total: -118.65 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -3.30 Total: -47.72 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -78.81 -0.60 -79.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.532 kcal (2) G-P(sol) polarization free energy of solvation -78.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds