Wall clock time and date at job start Wed Apr 1 2020 04:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00234 * 2 1 4 4 H 1.48503 * 109.46828 * 270.00366 * 3 2 1 5 5 H 1.48502 * 109.46826 * 29.99766 * 3 2 1 6 6 H 1.48488 * 109.47383 * 150.00110 * 3 2 1 7 7 C 1.37876 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00254 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00147 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47467 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00030 * 264.87809 * 10 9 7 12 12 C 1.52996 * 109.46775 * 269.99800 * 11 10 9 13 13 N 1.46905 * 109.47043 * 179.97438 * 12 11 10 14 14 C 1.47012 * 110.99834 * 293.63171 * 13 12 11 15 15 C 1.53106 * 109.25507 * 177.60498 * 14 13 12 16 16 O 1.43013 * 109.25340 * 56.85220 * 15 14 13 17 17 C 1.43016 * 113.74033 * 301.32232 * 16 15 14 18 18 C 1.47012 * 111.00020 * 169.99890 * 13 12 11 19 19 C 1.34774 * 119.99799 * 84.87306 * 10 9 7 20 20 O 1.21487 * 119.99738 * 174.59339 * 19 10 9 21 21 C 1.48362 * 120.00226 * 354.86500 * 19 10 9 22 22 C 1.39317 * 119.54231 * 173.22107 * 21 19 10 23 23 C 1.38404 * 119.21500 * 179.77424 * 22 21 19 24 24 C 1.40121 * 118.33778 * 0.48980 * 23 22 21 25 25 C 1.47351 * 120.49490 * 179.76904 * 24 23 22 26 26 O 1.21232 * 120.00409 * 179.97438 * 25 24 23 27 27 C 1.39979 * 119.01766 * 359.75642 * 24 23 22 28 28 N 1.31389 * 120.67885 * 359.97438 * 27 24 23 29 29 H 0.97002 * 120.00331 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47079 * 59.99672 * 9 7 2 31 31 H 1.08996 * 109.47140 * 299.99953 * 9 7 2 32 32 H 1.09003 * 109.47237 * 29.99496 * 11 10 9 33 33 H 1.08994 * 109.47285 * 149.99600 * 11 10 9 34 34 H 1.09003 * 109.46990 * 299.99848 * 12 11 10 35 35 H 1.09001 * 109.47761 * 59.99832 * 12 11 10 36 36 H 1.08996 * 109.51207 * 297.54137 * 14 13 12 37 37 H 1.08997 * 109.50558 * 57.67968 * 14 13 12 38 38 H 1.08992 * 109.50461 * 296.91708 * 15 14 13 39 39 H 1.09000 * 109.53757 * 176.80816 * 15 14 13 40 40 H 1.08991 * 109.51223 * 298.74186 * 17 16 15 41 41 H 1.09000 * 109.54256 * 178.62744 * 17 16 15 42 42 H 1.09007 * 109.51025 * 302.32556 * 18 13 12 43 43 H 1.09002 * 109.51027 * 62.41113 * 18 13 12 44 44 H 1.07998 * 120.39255 * 0.02562 * 22 21 19 45 45 H 1.08005 * 120.83107 * 180.22637 * 23 22 21 46 46 H 1.08006 * 120.00030 * 359.97438 * 25 24 23 47 47 H 1.08002 * 119.66209 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6128 0.0005 11 6 2.5928 -4.2432 -1.2631 12 6 1.6365 -5.3962 -1.5741 13 7 2.0270 -6.0280 -2.8416 14 6 1.8330 -5.1071 -3.9710 15 6 2.3071 -5.7827 -5.2606 16 8 1.5985 -7.0124 -5.4367 17 6 1.7658 -7.9333 -4.3553 18 6 1.2862 -7.2794 -3.0567 19 6 2.7201 -4.0572 1.1631 20 8 3.4320 -5.0416 1.1742 21 6 2.4151 -3.3478 2.4299 22 6 2.8354 -3.8934 3.6410 23 6 2.5514 -3.2236 4.8184 24 6 1.8380 -2.0199 4.7434 25 6 1.5054 -1.2702 5.9676 26 8 0.8883 -0.2295 5.8923 27 6 1.4461 -1.5400 3.4882 28 7 1.7412 -2.2050 2.3942 29 1 -0.4851 0.8400 0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5568 0.8903 32 1 2.5474 -3.5069 -2.0657 33 1 3.6095 -4.6269 -1.1792 34 1 1.6819 -6.1324 -0.7716 35 1 0.6197 -5.0125 -1.6580 36 1 0.7759 -4.8564 -4.0589 37 1 2.4106 -4.1982 -3.8029 38 1 3.3760 -5.9849 -5.1937 39 1 2.1131 -5.1261 -6.1087 40 1 2.8189 -8.1980 -4.2622 41 1 1.1801 -8.8322 -4.5480 42 1 1.4646 -7.9563 -2.2210 43 1 0.2202 -7.0636 -3.1291 44 1 3.3799 -4.8258 3.6606 45 1 2.8679 -3.6209 5.7715 46 1 1.8116 -1.6479 6.9320 47 1 0.8954 -0.6135 3.4183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931268668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:44 Heat of formation + Delta-G solvation = -40.322994 kcal Electronic energy + Delta-G solvation = -30888.360981 eV Core-core repulsion = 26651.932570 eV Total energy + Delta-G solvation = -4236.428411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.41655 -39.60938 -39.00781 -37.99628 -36.17289 -34.94435 -32.63126 -32.40580 -31.29886 -31.19057 -29.73053 -27.20427 -26.52303 -25.06681 -24.05017 -23.53527 -22.89143 -22.31886 -21.16011 -20.34969 -19.26408 -17.15491 -16.95039 -16.62375 -16.38297 -16.17137 -16.04658 -15.54629 -15.22126 -15.08173 -14.83522 -14.70405 -14.51008 -14.42979 -14.18538 -14.08289 -13.68900 -13.46801 -13.06941 -12.90244 -12.63857 -12.35662 -12.28887 -12.15881 -11.97447 -11.45745 -11.38562 -11.31695 -10.90651 -10.79623 -10.71400 -10.40613 -10.15906 -9.98042 -9.81559 -9.69726 -9.62725 -9.52813 -8.92345 -8.53920 -8.38373 -8.24682 -7.78859 -6.04051 -4.01341 0.44362 1.52608 2.35808 3.27322 3.32342 3.36041 3.38171 3.46340 3.78666 4.01910 4.19330 4.30943 4.42218 4.71818 4.82335 4.88746 4.97490 4.99607 5.03699 5.09838 5.13644 5.23224 5.33277 5.37188 5.40087 5.50140 5.52353 5.59588 5.61747 5.73807 5.79851 5.91125 5.92399 6.00519 6.09124 6.15553 6.23483 6.35824 6.66677 6.80762 6.95940 7.02418 7.07889 7.38202 7.40587 7.58230 7.86485 8.16384 8.23047 8.31076 8.77460 8.96610 9.56850 11.04462 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011506 B = 0.003228 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.006915 B = 8672.189299 C =10514.609258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.488 4.488 8 H 0.051 0.949 9 C 0.239 3.761 10 N -0.572 5.572 11 C 0.124 3.876 12 C 0.044 3.956 13 N -0.533 5.533 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.561 3.439 20 O -0.563 6.563 21 C 0.109 3.891 22 C -0.139 4.139 23 C -0.049 4.049 24 C -0.241 4.241 25 C 0.388 3.612 26 O -0.455 6.455 27 C 0.154 3.846 28 N -0.380 5.380 29 H 0.261 0.739 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.104 0.896 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -11.490 1.929 12.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.133 4.133 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.528 4.528 8 H 0.070 0.930 9 C 0.120 3.880 10 N -0.301 5.301 11 C 0.000 4.000 12 C -0.084 4.084 13 N -0.259 5.259 14 C -0.117 4.117 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.348 3.652 20 O -0.443 6.443 21 C -0.029 4.029 22 C -0.160 4.160 23 C -0.075 4.075 24 C -0.244 4.244 25 C 0.245 3.755 26 O -0.327 6.327 27 C -0.006 4.006 28 N -0.090 5.090 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.163 0.837 45 H 0.160 0.840 46 H 0.120 0.880 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.006 -11.131 0.890 11.564 hybrid contribution 0.047 1.051 1.082 1.509 sum 3.053 -10.080 1.971 10.715 Atomic orbital electron populations 1.69904 1.05729 1.26635 1.50792 1.24724 0.94628 0.98355 0.95581 0.86745 0.79979 0.84113 0.78062 1.20822 1.21132 1.20199 1.21142 0.92724 0.90190 1.48697 0.93037 1.19887 0.87310 0.82075 0.98695 1.48244 1.43588 1.33961 1.04263 1.21278 0.98560 0.93891 0.86246 1.22496 0.97804 0.97376 0.90739 1.62144 1.56594 1.04838 1.02304 1.22888 1.00829 0.96762 0.91183 1.22681 0.96163 0.85487 0.96894 1.87958 1.72243 1.27424 1.43141 1.22640 1.01117 0.91905 0.85519 1.22763 0.96440 0.92772 0.99036 1.17972 0.80491 0.83248 0.83513 1.90690 1.40239 1.26678 1.86716 1.21640 0.95128 0.92370 0.93809 1.22017 1.00503 1.01546 0.91898 1.21632 0.94307 0.92813 0.98728 1.22182 1.05099 0.99005 0.98159 1.23979 0.75383 0.83779 0.92352 1.90546 1.30048 1.22056 1.90075 1.23491 0.92760 0.98306 0.85994 1.69055 1.07509 1.03757 1.28662 0.92932 0.95743 0.91584 0.90176 0.90044 0.90415 0.94260 0.93690 0.88869 0.92254 0.88482 0.92287 0.88702 0.89681 0.94023 0.83700 0.84050 0.87971 0.81672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 13.29 55.43 0.74 -23.47 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.88 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.49 -12.40 7.43 -34.44 -0.26 -12.65 16 8 H 0.05 1.37 7.81 -52.49 -0.41 0.96 16 9 C 0.24 5.58 4.75 -5.19 -0.02 5.56 16 10 N -0.57 -11.76 2.47 -175.98 -0.43 -12.20 16 11 C 0.12 2.21 5.28 -4.04 -0.02 2.19 16 12 C 0.04 0.70 5.28 -3.82 -0.02 0.68 16 13 N -0.53 -7.37 4.73 -234.30 -1.11 -8.48 16 14 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 15 C 0.06 0.73 7.01 37.21 0.26 0.99 16 16 O -0.39 -4.90 10.83 -35.23 -0.38 -5.28 16 17 C 0.07 0.69 7.01 37.21 0.26 0.95 16 18 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 19 C 0.56 11.51 7.61 -12.09 -0.09 11.42 16 20 O -0.56 -11.89 15.96 5.38 0.09 -11.81 16 21 C 0.11 2.09 6.57 -82.91 -0.54 1.54 16 22 C -0.14 -2.08 9.61 -39.12 -0.38 -2.46 16 23 C -0.05 -0.59 9.94 -38.81 -0.39 -0.97 16 24 C -0.24 -3.40 5.89 -104.83 -0.62 -4.02 16 25 C 0.39 4.63 11.48 34.44 0.40 5.03 16 26 O -0.45 -7.37 17.19 5.60 0.10 -7.27 16 27 C 0.15 2.83 10.76 -17.09 -0.18 2.65 16 28 N -0.38 -7.86 4.75 -9.41 -0.04 -7.91 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.02 0.61 8.03 -51.93 -0.42 0.19 16 31 H 0.07 1.64 5.73 -51.93 -0.30 1.34 16 32 H 0.08 1.41 6.45 -51.93 -0.33 1.08 16 33 H 0.08 1.49 7.50 -51.93 -0.39 1.10 16 34 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 35 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.20 6.38 -51.93 -0.33 0.87 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.93 8.09 -51.92 -0.42 0.51 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.15 1.98 7.64 -52.49 -0.40 1.58 16 45 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 46 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16 47 H 0.17 3.24 7.65 -52.49 -0.40 2.84 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -31.28 389.94 -8.70 -39.98 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.76 Total: 1.83 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -1.74 Total: 12.94 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.85 Total: -52.05 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.20 Total: -24.36 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.28 -8.70 -39.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931268668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.345 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds