Wall clock time and date at job start Wed Apr 1 2020 04:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99688 * 2 1 4 4 H 1.48495 * 109.47119 * 269.99989 * 3 2 1 5 5 H 1.48504 * 109.47112 * 30.00155 * 3 2 1 6 6 H 1.48498 * 109.47048 * 150.00275 * 3 2 1 7 7 C 1.38805 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99664 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00580 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64594 * 0.04144 * 9 7 2 11 11 C 1.54362 * 107.29012 * 181.05555 * 10 9 7 12 12 H 1.08998 * 110.75864 * 140.50072 * 11 10 9 13 13 O 1.42900 * 110.70900 * 263.79300 * 11 10 9 14 14 C 1.55160 * 102.92118 * 22.14052 * 11 10 9 15 15 H 1.08996 * 111.00856 * 82.63766 * 14 11 10 16 16 C 1.53002 * 111.00679 * 206.45602 * 14 11 10 17 17 N 1.46497 * 109.47394 * 181.81900 * 16 14 11 18 18 C 1.34777 * 119.99739 * 180.02562 * 17 16 14 19 19 O 1.21507 * 120.00607 * 359.97438 * 18 17 16 20 20 C 1.48169 * 119.99716 * 179.97438 * 18 17 16 21 21 C 1.39611 * 120.88854 * 0.02562 * 20 18 17 22 22 C 1.38855 * 118.94910 * 179.97438 * 21 20 18 23 23 O 1.35683 * 119.62244 * 179.71956 * 22 21 20 24 24 N 1.32203 * 120.75020 * 0.02562 * 22 21 20 25 25 C 1.31873 * 121.97699 * 359.97438 * 24 22 21 26 26 C 1.50699 * 119.51412 * 180.02562 * 25 24 22 27 27 C 1.53004 * 117.49753 * 163.62115 * 26 25 24 28 28 C 1.52997 * 59.99986 * 252.51357 * 27 26 25 29 29 C 1.38024 * 120.97254 * 0.02562 * 25 24 22 30 30 C 1.47419 * 125.65356 * 179.97438 * 9 7 2 31 31 H 0.97002 * 119.99782 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.88046 * 300.43889 * 10 9 7 33 33 H 1.08997 * 109.88347 * 61.44781 * 10 9 7 34 34 H 0.96695 * 114.00331 * 293.48995 * 13 11 10 35 35 H 1.09007 * 109.47290 * 61.81083 * 16 14 11 36 36 H 1.09002 * 109.46729 * 301.81562 * 16 14 11 37 37 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 38 38 H 1.08001 * 120.53268 * 0.02562 * 21 20 18 39 39 H 0.96697 * 113.99759 * 90.01058 * 23 22 21 40 40 H 1.08993 * 115.55207 * 309.32863 * 26 25 24 41 41 H 1.09006 * 117.50256 * 0.02562 * 27 26 25 42 42 H 1.08997 * 117.49751 * 145.01925 * 27 26 25 43 43 H 1.09005 * 117.49435 * 252.50846 * 28 27 26 44 44 H 1.08997 * 117.49729 * 107.49650 * 28 27 26 45 45 H 1.08005 * 120.43189 * 180.02562 * 29 25 24 46 46 H 1.09002 * 110.36458 * 37.06531 * 30 9 7 47 47 H 1.09005 * 110.36951 * 274.74712 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1374 -2.5328 -0.0009 11 6 -0.4489 -4.0444 0.0264 12 1 -1.2985 -4.2521 0.6769 13 8 -0.6897 -4.5346 -1.2941 14 6 0.8519 -4.6562 0.6104 15 1 0.8572 -4.5971 1.6988 16 6 1.0371 -6.1008 0.1417 17 7 2.2495 -6.6587 0.7460 18 6 2.6157 -7.9269 0.4741 19 8 1.9402 -8.6077 -0.2720 20 6 3.8422 -8.4910 1.0848 21 6 4.6317 -7.7255 1.9450 22 6 5.7724 -8.2947 2.4953 23 8 6.5528 -7.5613 3.3285 24 7 6.1100 -9.5411 2.2119 25 6 5.3887 -10.2936 1.4041 26 6 5.8249 -11.7078 1.1200 27 6 4.7921 -12.6561 0.5076 28 6 5.2097 -12.8211 1.9702 29 6 4.2401 -9.8050 0.8150 30 6 1.9335 -3.7311 -0.0016 31 1 -0.4850 0.8401 0.0004 32 1 -0.5576 -2.0524 0.8827 33 1 -0.5544 -2.0819 -0.9014 34 1 -1.4914 -4.1826 -1.7043 35 1 1.1298 -6.1214 -0.9442 36 1 0.1743 -6.6943 0.4441 37 1 2.7889 -6.1150 1.3413 38 1 4.3592 -6.7071 2.1793 39 1 6.3056 -7.6299 4.2608 40 1 6.8632 -11.8263 0.8105 41 1 3.7972 -12.2570 0.3098 42 1 5.1510 -13.3986 -0.2051 43 1 5.8432 -13.6724 2.2197 44 1 4.4894 -12.5308 2.7350 45 1 3.6557 -10.4290 0.1551 46 1 2.8333 -3.7407 0.6136 47 1 2.1662 -4.0414 -1.0203 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958134081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:43 Heat of formation + Delta-G solvation = -29.457652 kcal Electronic energy + Delta-G solvation = -29888.366488 eV Core-core repulsion = 25652.409234 eV Total energy + Delta-G solvation = -4235.957254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21845 -39.60983 -38.33816 -38.19171 -36.50682 -35.09241 -34.68082 -33.17060 -32.08905 -30.43280 -29.69415 -27.83147 -25.94784 -25.23702 -24.54415 -23.29520 -22.58532 -21.98606 -20.67307 -20.17825 -19.78914 -18.81960 -17.69295 -17.47954 -17.27939 -16.52287 -16.14538 -15.80452 -15.71243 -15.36174 -15.18677 -15.00476 -14.87204 -14.13280 -13.94450 -13.78186 -13.57687 -13.24349 -12.84524 -12.64827 -12.62686 -12.41016 -12.18323 -11.95313 -11.79010 -11.49278 -11.27601 -11.08562 -10.86308 -10.85451 -10.71733 -10.56513 -10.45054 -10.18935 -10.11285 -10.05393 -9.84499 -9.71921 -9.24208 -9.15232 -9.06769 -8.70580 -6.91848 -5.79205 -3.12459 0.34434 0.56180 2.57476 2.92302 3.03932 3.26395 3.35987 3.41274 3.42689 3.63253 3.90314 4.30776 4.42287 4.45529 4.50917 4.59539 4.64214 4.66894 4.68813 4.95669 5.03621 5.18303 5.24043 5.25370 5.31809 5.37353 5.43784 5.48031 5.53088 5.64362 5.71206 5.74934 5.82620 5.95560 6.01836 6.02665 6.28667 6.30422 6.34690 6.51732 6.82009 7.09589 7.32497 7.35319 7.43413 7.51061 7.69593 8.00767 8.15526 8.18266 9.13590 9.74140 10.39226 11.32826 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.002261 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.227784 B =12380.059489 C =13851.395523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.153 3.847 11 C 0.083 3.917 12 H 0.058 0.942 13 O -0.564 6.564 14 C -0.110 4.110 15 H 0.089 0.911 16 C 0.139 3.861 17 N -0.715 5.715 18 C 0.555 3.445 19 O -0.528 6.528 20 C -0.063 4.063 21 C -0.160 4.160 22 C 0.315 3.685 23 O -0.477 6.477 24 N -0.485 5.485 25 C 0.180 3.820 26 C -0.111 4.111 27 C -0.171 4.171 28 C -0.160 4.160 29 C -0.125 4.125 30 C 0.144 3.856 31 H 0.253 0.747 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.376 0.624 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.148 0.852 39 H 0.403 0.597 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.154 0.846 46 H 0.036 0.964 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 -22.371 6.291 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.023 3.977 12 H 0.076 0.924 13 O -0.370 6.370 14 C -0.130 4.130 15 H 0.107 0.893 16 C 0.017 3.983 17 N -0.366 5.366 18 C 0.341 3.659 19 O -0.405 6.405 20 C -0.074 4.074 21 C -0.182 4.182 22 C 0.136 3.864 23 O -0.284 6.284 24 N -0.204 5.204 25 C 0.043 3.957 26 C -0.130 4.130 27 C -0.209 4.209 28 C -0.198 4.198 29 C -0.145 4.145 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.223 0.777 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.166 0.834 39 H 0.260 0.740 40 H 0.144 0.856 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.172 0.828 46 H 0.054 0.946 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 7.117 -23.009 5.774 24.767 hybrid contribution -0.641 2.037 0.362 2.166 sum 6.476 -20.972 6.136 22.790 Atomic orbital electron populations 1.69928 1.04922 1.25133 1.57288 1.24800 0.95769 0.97754 1.02196 0.86090 0.78564 0.83305 0.77635 1.21561 1.21657 1.20652 1.19069 0.90479 0.82316 1.43676 0.90355 1.44366 1.01354 0.99934 1.87244 1.21870 0.85336 0.88330 1.01701 1.23123 0.95018 0.96252 0.83284 0.92437 1.86397 1.48867 1.71464 1.30250 1.22700 0.97351 0.92930 1.00042 0.89250 1.21278 0.85209 0.92692 0.99164 1.46046 1.28245 1.13009 1.49290 1.18034 0.84303 0.82128 0.81473 1.90787 1.53879 1.59631 1.36207 1.20337 0.95560 0.94666 0.96874 1.22364 0.94450 1.01921 0.99420 1.18908 0.87534 0.86726 0.93210 1.84833 1.56955 1.65256 1.21324 1.66688 1.32447 1.05814 1.15444 1.19995 0.90070 0.94096 0.91568 1.20788 0.99637 0.86062 1.06521 1.23167 0.99608 1.01575 0.96511 1.22990 1.03194 0.99209 0.94364 1.22100 0.97418 0.95016 0.99990 1.21591 0.93610 0.85823 0.97197 0.93710 0.92939 0.93134 0.77691 0.89853 0.91387 0.76364 0.83406 0.73953 0.85645 0.87844 0.87669 0.87931 0.88590 0.82848 0.94560 0.95623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.31 55.49 0.57 -25.87 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.20 10.28 -15.06 -0.15 -6.36 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -14.89 3.39 -170.04 -0.58 -15.47 16 10 C 0.15 3.50 5.14 -3.04 -0.02 3.49 16 11 C 0.08 1.46 4.09 -24.87 -0.10 1.36 16 12 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 13 O -0.56 -9.49 12.17 -35.23 -0.43 -9.92 16 14 C -0.11 -1.78 3.00 -88.46 -0.27 -2.05 16 15 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.14 2.05 4.67 -4.04 -0.02 2.03 16 17 N -0.71 -9.05 5.41 -61.14 -0.33 -9.38 16 18 C 0.56 7.55 7.80 -12.18 -0.09 7.45 16 19 O -0.53 -8.80 16.44 5.36 0.09 -8.72 16 20 C -0.06 -0.73 5.91 -104.68 -0.62 -1.35 16 21 C -0.16 -1.61 9.55 -38.84 -0.37 -1.98 16 22 C 0.32 3.37 7.74 -17.16 -0.13 3.24 16 23 O -0.48 -4.38 13.56 -18.75 -0.25 -4.64 16 24 N -0.48 -5.60 10.27 -9.60 -0.10 -5.70 16 25 C 0.18 1.87 6.45 -82.65 -0.53 1.34 16 26 C -0.11 -0.89 6.21 -91.77 -0.57 -1.46 16 27 C -0.17 -1.07 9.79 -26.73 -0.26 -1.34 16 28 C -0.16 -1.02 10.23 -26.73 -0.27 -1.30 16 29 C -0.12 -1.34 8.92 -39.03 -0.35 -1.69 16 30 C 0.14 2.85 6.55 -2.52 -0.02 2.84 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 33 H 0.05 1.29 7.43 -51.93 -0.39 0.91 16 34 H 0.38 4.97 9.12 45.56 0.42 5.39 16 35 H 0.08 1.42 7.49 -51.93 -0.39 1.03 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.40 4.27 6.57 -40.82 -0.27 4.00 16 38 H 0.15 1.20 6.53 -52.49 -0.34 0.86 16 39 H 0.40 1.61 9.06 45.56 0.41 2.02 16 40 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 0.68 6.38 -51.93 -0.33 0.34 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.15 1.56 5.92 -52.48 -0.31 1.24 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.03 0.55 7.96 -51.93 -0.41 0.14 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -35.08 389.35 -8.98 -44.07 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -4.92 Total: 9.12 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -3.87 Total: 3.88 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.43 Total: -56.42 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.59 Total: -23.28 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.08 -8.98 -44.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958134081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.609 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds