Wall clock time and date at job start Wed Apr 1 2020 04:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99688 * 2 1 4 4 H 1.48495 * 109.47119 * 269.99989 * 3 2 1 5 5 H 1.48504 * 109.47112 * 30.00155 * 3 2 1 6 6 H 1.48498 * 109.47048 * 150.00275 * 3 2 1 7 7 C 1.38805 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99664 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00580 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64594 * 0.04144 * 9 7 2 11 11 C 1.54362 * 107.29012 * 181.05555 * 10 9 7 12 12 H 1.08998 * 110.75864 * 140.50072 * 11 10 9 13 13 O 1.42900 * 110.70900 * 263.79300 * 11 10 9 14 14 C 1.55160 * 102.92118 * 22.14052 * 11 10 9 15 15 H 1.08996 * 111.00856 * 82.63766 * 14 11 10 16 16 C 1.53002 * 111.00679 * 206.45602 * 14 11 10 17 17 N 1.46497 * 109.47394 * 181.81900 * 16 14 11 18 18 C 1.34777 * 119.99739 * 180.02562 * 17 16 14 19 19 O 1.21507 * 120.00607 * 359.97438 * 18 17 16 20 20 C 1.48169 * 119.99716 * 179.97438 * 18 17 16 21 21 C 1.39611 * 120.88854 * 0.02562 * 20 18 17 22 22 C 1.38855 * 118.94910 * 179.97438 * 21 20 18 23 23 O 1.35683 * 119.62244 * 179.71956 * 22 21 20 24 24 N 1.32203 * 120.75020 * 0.02562 * 22 21 20 25 25 C 1.31873 * 121.97699 * 359.97438 * 24 22 21 26 26 C 1.50699 * 119.51412 * 180.02562 * 25 24 22 27 27 C 1.53004 * 117.49753 * 163.62115 * 26 25 24 28 28 C 1.52997 * 59.99986 * 252.51357 * 27 26 25 29 29 C 1.38024 * 120.97254 * 0.02562 * 25 24 22 30 30 C 1.47419 * 125.65356 * 179.97438 * 9 7 2 31 31 H 0.97002 * 119.99782 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.88046 * 300.43889 * 10 9 7 33 33 H 1.08997 * 109.88347 * 61.44781 * 10 9 7 34 34 H 0.96695 * 114.00331 * 293.48995 * 13 11 10 35 35 H 1.09007 * 109.47290 * 61.81083 * 16 14 11 36 36 H 1.09002 * 109.46729 * 301.81562 * 16 14 11 37 37 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 38 38 H 1.08001 * 120.53268 * 0.02562 * 21 20 18 39 39 H 0.96697 * 113.99759 * 90.01058 * 23 22 21 40 40 H 1.08993 * 115.55207 * 309.32863 * 26 25 24 41 41 H 1.09006 * 117.50256 * 0.02562 * 27 26 25 42 42 H 1.08997 * 117.49751 * 145.01925 * 27 26 25 43 43 H 1.09005 * 117.49435 * 252.50846 * 28 27 26 44 44 H 1.08997 * 117.49729 * 107.49650 * 28 27 26 45 45 H 1.08005 * 120.43189 * 180.02562 * 29 25 24 46 46 H 1.09002 * 110.36458 * 37.06531 * 30 9 7 47 47 H 1.09005 * 110.36951 * 274.74712 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1374 -2.5328 -0.0009 11 6 -0.4489 -4.0444 0.0264 12 1 -1.2985 -4.2521 0.6769 13 8 -0.6897 -4.5346 -1.2941 14 6 0.8519 -4.6562 0.6104 15 1 0.8572 -4.5971 1.6988 16 6 1.0371 -6.1008 0.1417 17 7 2.2495 -6.6587 0.7460 18 6 2.6157 -7.9269 0.4741 19 8 1.9402 -8.6077 -0.2720 20 6 3.8422 -8.4910 1.0848 21 6 4.6317 -7.7255 1.9450 22 6 5.7724 -8.2947 2.4953 23 8 6.5528 -7.5613 3.3285 24 7 6.1100 -9.5411 2.2119 25 6 5.3887 -10.2936 1.4041 26 6 5.8249 -11.7078 1.1200 27 6 4.7921 -12.6561 0.5076 28 6 5.2097 -12.8211 1.9702 29 6 4.2401 -9.8050 0.8150 30 6 1.9335 -3.7311 -0.0016 31 1 -0.4850 0.8401 0.0004 32 1 -0.5576 -2.0524 0.8827 33 1 -0.5544 -2.0819 -0.9014 34 1 -1.4914 -4.1826 -1.7043 35 1 1.1298 -6.1214 -0.9442 36 1 0.1743 -6.6943 0.4441 37 1 2.7889 -6.1150 1.3413 38 1 4.3592 -6.7071 2.1793 39 1 6.3056 -7.6299 4.2608 40 1 6.8632 -11.8263 0.8105 41 1 3.7972 -12.2570 0.3098 42 1 5.1510 -13.3986 -0.2051 43 1 5.8432 -13.6724 2.2197 44 1 4.4894 -12.5308 2.7350 45 1 3.6557 -10.4290 0.1551 46 1 2.8333 -3.7407 0.6136 47 1 2.1662 -4.0414 -1.0203 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958134081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:42 Heat of formation + Delta-G solvation = -59.119608 kcal Electronic energy + Delta-G solvation = -29889.652727 eV Core-core repulsion = 25652.409234 eV Total energy + Delta-G solvation = -4237.243493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05278 -40.70995 -39.77133 -38.84108 -37.16996 -36.42364 -36.20819 -34.25561 -33.65882 -31.46660 -31.03391 -29.47169 -27.44918 -26.26283 -25.68967 -24.47940 -23.20086 -22.76168 -22.17545 -21.50723 -20.96593 -19.67772 -19.11975 -18.57423 -18.22788 -17.99288 -16.93440 -16.83749 -16.72581 -16.61776 -16.43713 -15.98691 -15.77531 -15.64502 -15.39956 -15.10679 -14.78490 -14.39765 -14.29660 -14.11471 -13.56729 -13.41113 -13.14405 -13.09202 -13.03422 -12.88156 -12.68543 -12.36845 -12.28565 -12.10267 -11.92249 -11.79013 -11.71316 -11.66226 -11.38470 -11.34323 -11.03179 -10.79232 -10.73366 -10.58647 -10.20006 -9.88846 -8.91755 -7.87068 -5.21993 -0.51943 -0.20116 1.45737 1.47124 1.55533 1.63287 1.88678 2.35124 2.47836 2.48816 2.97944 3.20843 3.26306 3.34590 3.47041 3.54457 3.76615 3.81614 3.89578 3.92187 3.95020 3.99141 4.04203 4.10014 4.25724 4.41501 4.51218 4.57264 4.58957 4.63010 4.76350 4.82205 4.85627 4.90006 4.98216 5.03014 5.15645 5.21291 5.24326 5.31878 5.36573 5.41624 5.52497 5.70301 6.17119 6.32748 6.52707 6.77959 6.92595 6.98349 7.08684 7.75217 8.39097 9.23019 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.002261 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.227784 B =12380.059489 C =13851.395523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.977 3.023 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.624 5.624 10 C 0.159 3.841 11 C 0.096 3.904 12 H 0.090 0.910 13 O -0.571 6.571 14 C -0.093 4.093 15 H 0.111 0.889 16 C 0.154 3.846 17 N -0.706 5.706 18 C 0.559 3.441 19 O -0.563 6.563 20 C -0.073 4.073 21 C -0.155 4.155 22 C 0.312 3.688 23 O -0.485 6.485 24 N -0.503 5.503 25 C 0.179 3.821 26 C -0.129 4.129 27 C -0.164 4.164 28 C -0.153 4.153 29 C -0.130 4.130 30 C 0.141 3.859 31 H 0.247 0.753 32 H 0.024 0.976 33 H 0.013 0.987 34 H 0.391 0.609 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.168 0.832 39 H 0.424 0.576 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.091 0.909 45 H 0.156 0.844 46 H 0.052 0.948 47 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 -23.731 7.389 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.369 4.369 8 H 0.100 0.900 9 N -0.351 5.351 10 C 0.033 3.967 11 C 0.036 3.964 12 H 0.107 0.893 13 O -0.379 6.379 14 C -0.112 4.112 15 H 0.129 0.871 16 C 0.031 3.969 17 N -0.357 5.357 18 C 0.345 3.655 19 O -0.442 6.442 20 C -0.083 4.083 21 C -0.176 4.176 22 C 0.133 3.867 23 O -0.295 6.295 24 N -0.223 5.223 25 C 0.041 3.959 26 C -0.148 4.148 27 C -0.201 4.201 28 C -0.190 4.190 29 C -0.151 4.151 30 C 0.016 3.984 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.241 0.759 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.250 0.750 38 H 0.185 0.815 39 H 0.285 0.715 40 H 0.147 0.853 41 H 0.117 0.883 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.109 0.891 45 H 0.173 0.827 46 H 0.070 0.930 47 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 8.119 -24.383 6.901 26.609 hybrid contribution -0.896 2.439 0.009 2.598 sum 7.223 -21.944 6.910 24.113 Atomic orbital electron populations 1.70140 1.06155 1.25274 1.58422 1.25611 0.96668 1.00909 1.02697 0.85100 0.77798 0.79269 0.77306 1.21733 1.21983 1.19228 1.19446 0.91016 0.83685 1.42785 0.90022 1.44688 1.02375 1.01036 1.86974 1.21703 0.84428 0.91966 0.98560 1.22968 0.96817 0.92322 0.84320 0.89275 1.86378 1.50159 1.71149 1.30179 1.22593 0.94949 0.92757 1.00934 0.87059 1.20976 0.86356 0.91773 0.97826 1.45894 1.27794 1.12938 1.49117 1.18273 0.84471 0.81910 0.80810 1.90769 1.55117 1.60495 1.37819 1.20191 0.95162 0.95201 0.97782 1.22474 0.93971 1.02547 0.98637 1.19052 0.87624 0.86620 0.93384 1.84785 1.56893 1.64959 1.22892 1.66760 1.33053 1.06431 1.16032 1.20320 0.89665 0.94994 0.90883 1.20882 1.00285 0.85269 1.08337 1.23244 0.98880 1.01034 0.96912 1.23069 1.02886 0.98779 0.94294 1.22192 0.97749 0.94961 1.00188 1.21717 0.95309 0.84421 0.97002 0.94384 0.95801 0.96868 0.75941 0.92142 0.90433 0.74982 0.81498 0.71456 0.85254 0.88309 0.85981 0.86262 0.89084 0.82651 0.92966 0.97088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.72 10.31 21.65 0.22 -55.49 16 2 C -0.07 -3.68 5.49 84.86 0.47 -3.22 16 3 Si 0.98 45.09 29.55 68.60 2.03 47.12 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.24 -13.18 10.28 84.03 0.86 -12.32 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.62 -30.96 3.39 -691.88 -2.35 -33.31 16 10 C 0.16 7.39 5.14 86.74 0.45 7.83 16 11 C 0.10 3.22 4.09 31.80 0.13 3.35 16 12 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 13 O -0.57 -18.59 12.17 -148.98 -1.81 -20.40 16 14 C -0.09 -2.81 3.00 -9.39 -0.03 -2.84 16 15 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 16 C 0.15 4.23 4.67 86.38 0.40 4.64 16 17 N -0.71 -16.49 5.41 -465.66 -2.52 -19.01 16 18 C 0.56 14.51 7.80 86.88 0.68 15.19 16 19 O -0.56 -18.41 16.44 -3.74 -0.06 -18.47 16 20 C -0.07 -1.58 5.91 -19.90 -0.12 -1.70 16 21 C -0.15 -2.85 9.55 22.75 0.22 -2.63 16 22 C 0.31 6.19 7.74 84.78 0.66 6.85 16 23 O -0.48 -7.99 13.56 -90.01 -1.22 -9.21 16 24 N -0.50 -11.05 10.27 -297.16 -3.05 -14.10 16 25 C 0.18 3.55 6.45 42.50 0.27 3.83 16 26 C -0.13 -1.90 6.21 -11.54 -0.07 -1.97 16 27 C -0.16 -1.80 9.79 30.59 0.30 -1.50 16 28 C -0.15 -1.70 10.23 30.59 0.31 -1.39 16 29 C -0.13 -2.72 8.92 22.63 0.20 -2.51 16 30 C 0.14 5.43 6.55 86.86 0.57 6.00 16 31 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.02 1.23 7.38 -2.39 -0.02 1.21 16 33 H 0.01 0.70 7.43 -2.39 -0.02 0.68 16 34 H 0.39 10.00 9.12 -74.06 -0.68 9.33 16 35 H 0.06 1.99 7.49 -2.38 -0.02 1.97 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.41 7.70 6.57 -92.71 -0.61 7.09 16 38 H 0.17 2.29 6.53 -2.91 -0.02 2.27 16 39 H 0.42 2.49 9.06 -74.06 -0.67 1.82 16 40 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.10 1.19 6.38 -2.38 -0.02 1.17 16 42 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.16 3.10 5.92 -2.91 -0.02 3.08 16 46 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.01 0.47 7.96 -2.38 -0.02 0.45 16 Total: -1.00 -76.76 389.35 -4.37 -81.13 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.91 Total: 24.12 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 5.30 Total: 17.61 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -7.69 Total: -121.91 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -3.09 Total: -48.08 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.76 -4.37 -81.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958134081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.013 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds