Wall clock time and date at job start Wed Apr 1 2020 04:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99622 * 2 1 4 4 H 1.48499 * 109.47140 * 270.00211 * 3 2 1 5 5 H 1.48496 * 109.47439 * 30.00438 * 3 2 1 6 6 H 1.48503 * 109.46841 * 150.00273 * 3 2 1 7 7 C 1.38809 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.65186 * 0.02640 * 9 7 2 11 11 C 1.54322 * 107.27269 * 178.90274 * 10 9 7 12 12 H 1.09002 * 110.71963 * 219.44477 * 11 10 9 13 13 O 1.42896 * 110.71801 * 96.34675 * 11 10 9 14 14 C 1.55164 * 102.94370 * 337.80987 * 11 10 9 15 15 H 1.09001 * 111.00047 * 277.42887 * 14 11 10 16 16 C 1.52995 * 111.00483 * 153.57714 * 14 11 10 17 17 N 1.46496 * 109.47280 * 175.00152 * 16 14 11 18 18 C 1.34777 * 120.00371 * 179.97438 * 17 16 14 19 19 O 1.21513 * 119.99777 * 359.97438 * 18 17 16 20 20 C 1.48155 * 120.00158 * 179.97438 * 18 17 16 21 21 C 1.39613 * 120.89157 * 359.97438 * 20 18 17 22 22 C 1.38853 * 118.94922 * 179.97438 * 21 20 18 23 23 O 1.35682 * 119.62284 * 180.02562 * 22 21 20 24 24 N 1.32201 * 120.75416 * 0.02562 * 22 21 20 25 25 C 1.31874 * 121.97640 * 359.97438 * 24 22 21 26 26 C 1.50698 * 119.51594 * 180.02562 * 25 24 22 27 27 C 1.53001 * 117.49804 * 163.62279 * 26 25 24 28 28 C 1.52993 * 60.00086 * 252.51020 * 27 26 25 29 29 C 1.38029 * 120.97088 * 359.73626 * 25 24 22 30 30 C 1.47435 * 125.64724 * 179.97438 * 9 7 2 31 31 H 0.96995 * 120.00311 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.87665 * 59.48574 * 10 9 7 33 33 H 1.08995 * 109.88258 * 298.32519 * 10 9 7 34 34 H 0.96702 * 113.99631 * 63.84596 * 13 11 10 35 35 H 1.09004 * 109.46918 * 295.00017 * 16 14 11 36 36 H 1.08997 * 109.47200 * 54.99711 * 16 14 11 37 37 H 0.97005 * 119.99755 * 359.97438 * 17 16 14 38 38 H 1.07998 * 120.52900 * 0.02562 * 21 20 18 39 39 H 0.96694 * 114.00616 * 89.99649 * 23 22 21 40 40 H 1.08999 * 115.55244 * 309.33011 * 26 25 24 41 41 H 1.09002 * 117.50452 * 359.97438 * 27 26 25 42 42 H 1.09002 * 117.49848 * 145.02469 * 27 26 25 43 43 H 1.09001 * 117.50320 * 252.50772 * 28 27 26 44 44 H 1.09003 * 117.50119 * 107.49230 * 28 27 26 45 45 H 1.07998 * 120.43420 * 180.28922 * 29 25 24 46 46 H 1.08997 * 110.36223 * 323.00847 * 30 9 7 47 47 H 1.09005 * 110.35921 * 85.32528 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5328 -0.0006 11 6 -0.4483 -4.0441 -0.0288 12 1 -1.2984 -4.2509 -0.6790 13 8 -0.6924 -4.5347 1.2909 14 6 0.8521 -4.6556 -0.6141 15 1 0.8570 -4.5947 -1.7024 16 6 1.0372 -6.1007 -0.1470 17 7 2.2061 -6.6826 -0.8111 18 6 2.5647 -7.9556 -0.5512 19 8 1.9185 -8.6204 0.2343 20 6 3.7465 -8.5443 -1.2233 21 6 4.5018 -7.7975 -2.1294 22 6 5.6019 -8.3892 -2.7356 23 8 6.3459 -7.6758 -3.6180 24 7 5.9328 -9.6398 -2.4630 25 6 5.2431 -10.3751 -1.6129 26 6 5.6702 -11.7948 -1.3427 27 6 5.1020 -12.4787 -0.0976 28 6 6.5684 -12.0436 -0.1294 29 6 4.1392 -9.8617 -0.9625 30 6 1.9336 -3.7312 -0.0016 31 1 -0.4850 0.8400 0.0004 32 1 -0.5575 -2.0513 -0.8837 33 1 -0.5542 -2.0853 0.9017 34 1 -1.4730 -4.1522 1.7146 35 1 1.1869 -6.1172 0.9325 36 1 0.1495 -6.6807 -0.3996 37 1 2.7221 -6.1518 -1.4379 38 1 4.2352 -6.7754 -2.3546 39 1 7.0764 -7.1886 -3.2131 40 1 5.8346 -12.4125 -2.2257 41 1 4.4196 -11.9017 0.5265 42 1 4.8924 -13.5465 -0.1612 43 1 7.3236 -12.8251 -0.2140 44 1 6.8506 -11.1804 0.4734 45 1 3.5834 -10.4702 -0.2645 46 1 2.8330 -3.7398 -0.6172 47 1 2.1666 -4.0428 1.0166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958134083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:50 Heat of formation + Delta-G solvation = -58.978578 kcal Electronic energy + Delta-G solvation = -29881.973016 eV Core-core repulsion = 25644.735639 eV Total energy + Delta-G solvation = -4237.237378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.05310 -40.70878 -39.77689 -38.83963 -37.16860 -36.41875 -36.21034 -34.25863 -33.65982 -31.46735 -31.03335 -29.47560 -27.44491 -26.26113 -25.69094 -24.47376 -23.20165 -22.75762 -22.18259 -21.54053 -20.95926 -19.67152 -19.11203 -18.57735 -18.22722 -17.96724 -16.92834 -16.83954 -16.74957 -16.62439 -16.38808 -16.02448 -15.78959 -15.62654 -15.40872 -15.09210 -14.78860 -14.40376 -14.30958 -14.10301 -13.59723 -13.38798 -13.13621 -13.09705 -13.02838 -12.88123 -12.68945 -12.36079 -12.28879 -12.11520 -11.92420 -11.79291 -11.69651 -11.67767 -11.38739 -11.34215 -11.03189 -10.79488 -10.72901 -10.58937 -10.20230 -9.88782 -8.91603 -7.86781 -5.21759 -0.52025 -0.20271 1.46238 1.47417 1.55889 1.63560 1.87787 2.34503 2.48133 2.49351 2.98390 3.20886 3.25774 3.34703 3.46780 3.54624 3.76576 3.81513 3.89417 3.92159 3.95000 3.98897 4.03966 4.09473 4.25455 4.41419 4.50810 4.57086 4.59086 4.63110 4.76125 4.82933 4.85543 4.89926 4.97617 5.02859 5.15526 5.20836 5.23922 5.31536 5.36569 5.41867 5.52245 5.69847 6.17080 6.32745 6.52022 6.77393 6.91639 6.98283 7.08683 7.75386 8.39369 9.23437 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.002260 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.698466 B =12388.603102 C =13704.474824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.977 3.023 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.240 4.240 8 H 0.083 0.917 9 N -0.625 5.625 10 C 0.159 3.841 11 C 0.095 3.905 12 H 0.087 0.913 13 O -0.571 6.571 14 C -0.093 4.093 15 H 0.110 0.890 16 C 0.155 3.845 17 N -0.706 5.706 18 C 0.559 3.441 19 O -0.563 6.563 20 C -0.073 4.073 21 C -0.154 4.154 22 C 0.312 3.688 23 O -0.485 6.485 24 N -0.503 5.503 25 C 0.179 3.821 26 C -0.127 4.127 27 C -0.163 4.163 28 C -0.156 4.156 29 C -0.130 4.130 30 C 0.141 3.859 31 H 0.247 0.753 32 H 0.023 0.977 33 H 0.014 0.986 34 H 0.391 0.609 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.168 0.832 39 H 0.424 0.576 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.156 0.844 46 H 0.053 0.947 47 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.576 -22.289 -4.031 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.369 4.369 8 H 0.101 0.899 9 N -0.351 5.351 10 C 0.034 3.966 11 C 0.035 3.965 12 H 0.105 0.895 13 O -0.378 6.378 14 C -0.113 4.113 15 H 0.128 0.872 16 C 0.032 3.968 17 N -0.357 5.357 18 C 0.345 3.655 19 O -0.442 6.442 20 C -0.083 4.083 21 C -0.176 4.176 22 C 0.133 3.867 23 O -0.295 6.295 24 N -0.223 5.223 25 C 0.041 3.959 26 C -0.146 4.146 27 C -0.200 4.200 28 C -0.193 4.193 29 C -0.151 4.151 30 C 0.016 3.984 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.032 0.968 34 H 0.241 0.759 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.251 0.749 38 H 0.185 0.815 39 H 0.285 0.715 40 H 0.149 0.851 41 H 0.116 0.884 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.107 0.893 45 H 0.173 0.827 46 H 0.071 0.929 47 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 9.953 -23.339 -4.442 25.759 hybrid contribution -0.471 2.702 0.553 2.798 sum 9.482 -20.638 -3.888 23.042 Atomic orbital electron populations 1.70137 1.06194 1.25281 1.58447 1.25619 0.96652 1.00946 1.02713 0.85094 0.77593 0.79205 0.77532 1.21059 1.22337 1.19572 1.19452 0.91046 0.83636 1.42753 0.89898 1.44694 1.02328 1.01081 1.86993 1.21696 0.84515 0.91868 0.98555 1.22962 0.96744 0.92416 0.84349 0.89535 1.86367 1.52702 1.68914 1.29855 1.22587 0.94990 0.92810 1.00885 0.87188 1.20959 0.87458 0.91452 0.96973 1.45898 1.31080 1.12648 1.46114 1.18274 0.83913 0.81893 0.81392 1.90772 1.55115 1.61639 1.36696 1.20187 0.95459 0.95181 0.97505 1.22476 0.96534 1.02489 0.96086 1.19052 0.91143 0.87558 0.88932 1.84763 1.47747 1.63590 1.33431 1.66762 1.32704 1.07272 1.15532 1.20322 0.90145 0.95027 0.90388 1.20884 1.07935 0.90465 0.95295 1.23243 0.96673 1.02262 0.97832 1.23069 0.94449 1.03690 0.98097 1.22195 0.97259 0.94723 1.00920 1.21720 0.95257 0.84321 0.97068 0.94399 0.95847 0.96807 0.75939 0.92040 0.90686 0.74946 0.81451 0.71477 0.85073 0.88394 0.85852 0.86237 0.89310 0.82668 0.92854 0.96902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.56 10.31 21.65 0.22 -55.34 16 2 C -0.07 -3.68 5.49 84.86 0.47 -3.22 16 3 Si 0.98 44.72 29.55 68.60 2.03 46.75 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.24 -13.02 10.28 84.03 0.86 -12.16 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -30.70 3.39 -692.00 -2.35 -33.05 16 10 C 0.16 7.37 5.14 86.73 0.45 7.82 16 11 C 0.10 3.22 4.08 31.78 0.13 3.35 16 12 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 13 O -0.57 -18.56 12.26 -148.98 -1.83 -20.39 16 14 C -0.09 -2.82 2.98 -9.41 -0.03 -2.85 16 15 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 16 C 0.16 4.27 4.61 86.38 0.40 4.67 16 17 N -0.71 -16.39 5.46 -465.69 -2.54 -18.93 16 18 C 0.56 14.46 7.80 86.88 0.68 15.13 16 19 O -0.56 -18.42 16.44 -3.76 -0.06 -18.48 16 20 C -0.07 -1.57 5.91 -19.90 -0.12 -1.69 16 21 C -0.15 -2.81 9.55 22.75 0.22 -2.59 16 22 C 0.31 6.14 7.74 84.78 0.66 6.80 16 23 O -0.48 -7.90 13.56 -90.00 -1.22 -9.12 16 24 N -0.50 -10.97 10.27 -297.16 -3.05 -14.03 16 25 C 0.18 3.53 6.46 42.50 0.27 3.80 16 26 C -0.13 -1.86 6.22 -11.54 -0.07 -1.93 16 27 C -0.16 -1.81 9.79 30.59 0.30 -1.51 16 28 C -0.16 -1.81 10.23 30.59 0.31 -1.50 16 29 C -0.13 -2.71 8.92 22.63 0.20 -2.50 16 30 C 0.14 5.38 6.64 86.85 0.58 5.96 16 31 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.02 1.21 7.38 -2.39 -0.02 1.19 16 33 H 0.01 0.73 7.43 -2.39 -0.02 0.71 16 34 H 0.39 10.10 9.12 -74.06 -0.68 9.42 16 35 H 0.06 2.00 7.56 -2.39 -0.02 1.98 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.41 7.57 6.61 -92.70 -0.61 6.96 16 38 H 0.17 2.24 6.53 -2.91 -0.02 2.22 16 39 H 0.42 2.72 9.06 -74.06 -0.67 2.05 16 40 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 1.21 6.37 -2.39 -0.02 1.20 16 42 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.16 3.09 5.91 -2.91 -0.02 3.07 16 46 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.01 0.54 7.91 -2.38 -0.02 0.52 16 Total: -1.00 -75.89 389.54 -4.41 -80.30 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -0.91 Total: 24.70 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 5.30 Total: 17.58 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -7.72 Total: -121.34 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -3.11 Total: -47.99 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -75.89 -4.41 -80.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958134083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.325 kcal (2) G-P(sol) polarization free energy of solvation -75.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds