Wall clock time and date at job start Wed Apr 1 2020 04:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00296 * 2 1 4 4 H 1.48501 * 109.46843 * 269.99979 * 3 2 1 5 5 H 1.48498 * 109.47072 * 150.00081 * 3 2 1 6 6 H 1.48498 * 109.47087 * 29.99688 * 3 2 1 7 7 C 1.38815 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99809 * 155.61667 * 7 2 1 9 9 N 1.36937 * 119.99944 * 335.61437 * 7 2 1 10 10 C 1.48141 * 127.83847 * 158.93083 * 9 7 2 11 11 C 1.54389 * 104.61972 * 140.41544 * 10 9 7 12 12 H 1.08995 * 117.61518 * 244.78380 * 11 10 9 13 13 C 1.54281 * 104.95956 * 23.86679 * 11 10 9 14 14 H 1.08998 * 121.81770 * 222.17270 * 13 11 10 15 15 C 1.48145 * 127.83974 * 338.61234 * 9 7 2 16 16 C 1.53003 * 118.12264 * 89.21099 * 11 10 9 17 17 H 1.09001 * 117.44242 * 16.10274 * 16 11 10 18 18 N 1.46499 * 117.44409 * 160.81259 * 16 11 10 19 19 C 1.34773 * 119.99942 * 205.00138 * 18 16 11 20 20 O 1.21286 * 119.99793 * 359.97438 * 19 18 16 21 21 C 1.50695 * 120.00046 * 180.02562 * 19 18 16 22 22 H 1.08993 * 110.37100 * 60.89112 * 21 19 18 23 23 C 1.54383 * 110.41218 * 298.53948 * 21 19 18 24 24 C 1.54252 * 105.06305 * 217.36909 * 23 21 19 25 25 C 1.54373 * 105.06291 * 0.02562 * 24 23 21 26 26 N 1.48559 * 104.59545 * 23.85080 * 25 24 23 27 27 C 1.46903 * 111.00186 * 200.96269 * 26 25 24 28 28 C 1.52995 * 109.47135 * 285.41654 * 27 26 25 29 29 F 1.39908 * 109.47031 * 59.99933 * 28 27 26 30 30 F 1.39898 * 109.47411 * 180.02562 * 28 27 26 31 31 F 1.39896 * 109.47360 * 300.00236 * 28 27 26 32 32 H 0.96998 * 120.00528 * 174.47574 * 1 2 3 33 33 H 1.09000 * 110.40761 * 259.20014 * 10 9 7 34 34 H 1.09005 * 110.40589 * 21.62995 * 10 9 7 35 35 H 1.09003 * 110.40893 * 338.36893 * 15 9 7 36 36 H 1.09003 * 110.41009 * 100.80005 * 15 9 7 37 37 H 0.97003 * 119.99850 * 24.99246 * 18 16 11 38 38 H 1.09004 * 110.32080 * 336.27170 * 23 21 19 39 39 H 1.09002 * 110.32005 * 98.36398 * 23 21 19 40 40 H 1.09009 * 110.32304 * 118.89350 * 24 23 21 41 41 H 1.08995 * 110.32837 * 240.99996 * 24 23 21 42 42 H 1.08999 * 110.41963 * 142.62856 * 25 24 23 43 43 H 1.09004 * 110.41201 * 264.95756 * 25 24 23 44 44 H 1.08997 * 109.46971 * 45.42067 * 27 26 25 45 45 H 1.08999 * 109.47076 * 165.42050 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 3.5479 1.4400 0.7000 6 1 1.4478 2.6527 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0180 -1.2441 -0.3856 9 7 1.4171 -2.3350 0.4907 10 6 1.7764 -3.7440 0.2078 11 6 1.6233 -4.4651 1.5644 12 1 2.5222 -4.8800 2.0202 13 6 0.6305 -3.5982 2.3664 14 1 0.7823 -3.3795 3.4233 15 6 0.2747 -2.4294 1.4292 16 6 0.2569 -5.0566 1.9166 17 1 -0.4602 -5.1825 1.1054 18 7 0.2145 -6.0833 2.9608 19 6 -0.7901 -6.9815 2.9823 20 8 -1.6592 -6.9395 2.1374 21 6 -0.8340 -8.0372 4.0567 22 1 -0.9040 -7.5742 5.0409 23 6 0.4146 -8.9414 3.9746 24 6 -0.0931 -10.3578 4.3142 25 6 -1.6059 -10.1906 4.5723 26 7 -1.9781 -8.9581 3.8311 27 6 -3.2256 -8.3855 4.3545 28 6 -4.4107 -9.2341 3.8898 29 9 -4.2625 -10.5418 4.3646 30 9 -5.5988 -8.6885 4.3877 31 9 -4.4546 -9.2479 2.4916 32 1 -0.4851 -0.8361 -0.0809 33 1 1.0942 -4.1698 -0.5280 34 1 2.8060 -3.8105 -0.1439 35 1 0.1726 -1.5051 1.9979 36 1 -0.6456 -2.6467 0.8870 37 1 0.9095 -6.1166 3.6367 38 1 0.8319 -8.9199 2.9678 39 1 1.1622 -8.6212 4.7004 40 1 0.0750 -11.0318 3.4741 41 1 0.4058 -10.7349 5.2069 42 1 -2.1550 -11.0482 4.1838 43 1 -1.7984 -10.0680 5.6382 44 1 -3.1914 -8.3747 5.4439 45 1 -3.3410 -7.3667 3.9846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962766365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:04 Heat of formation + Delta-G solvation = -117.179712 kcal Electronic energy + Delta-G solvation = -31071.863372 eV Core-core repulsion = 26290.245464 eV Total energy + Delta-G solvation = -4781.617908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.25864 -47.85386 -47.63755 -40.57250 -39.03808 -37.84906 -34.71608 -33.52706 -32.73737 -30.52352 -29.45977 -28.39079 -27.44593 -25.45953 -23.85607 -23.04267 -21.66898 -21.47863 -20.57923 -20.07216 -19.41985 -18.74419 -18.66915 -17.89628 -17.48384 -17.29245 -16.57039 -16.13020 -15.39088 -14.94121 -14.80839 -14.59727 -14.45942 -14.23435 -14.10625 -13.97261 -13.88175 -13.82896 -13.78969 -13.60855 -13.47962 -13.18455 -12.93236 -12.45952 -12.38605 -12.07765 -11.89825 -11.77502 -11.67634 -11.55136 -11.12142 -10.83244 -10.70070 -10.59414 -10.29131 -10.07425 -9.93257 -9.67947 -9.32103 -9.15637 -8.58674 -8.40029 -7.01956 -6.15848 -3.21788 2.37326 2.47023 2.73903 3.28868 3.47859 3.51958 3.55027 3.67227 3.78740 3.95058 4.08929 4.13295 4.21213 4.43313 4.52928 4.59896 4.65727 4.66928 4.90906 4.93015 4.97391 5.08891 5.17839 5.26565 5.29187 5.39035 5.39765 5.55888 5.62381 5.68221 5.74141 5.90991 5.99963 6.08277 6.17672 6.35200 6.55952 6.63278 6.71977 6.94174 6.96793 7.43297 7.71365 8.15855 8.41943 8.94525 9.75365 10.37897 11.20286 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.002187 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.975021 B =12802.067404 C =13765.494128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.026 4.026 3 Si 1.072 2.928 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.154 3.846 11 C -0.174 4.174 12 H 0.103 0.897 13 C -0.178 4.178 14 H 0.106 0.894 15 C 0.165 3.835 16 C 0.097 3.903 17 H 0.135 0.865 18 N -0.697 5.697 19 C 0.521 3.479 20 O -0.512 6.512 21 C 0.048 3.952 22 H 0.085 0.915 23 C -0.115 4.115 24 C -0.121 4.121 25 C 0.022 3.978 26 N -0.481 5.481 27 C -0.001 4.001 28 C 0.462 3.538 29 F -0.187 7.187 30 F -0.184 7.184 31 F -0.166 7.166 32 H 0.270 0.730 33 H 0.027 0.973 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.398 0.602 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 -22.781 15.069 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.227 4.227 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.460 4.460 8 H 0.083 0.917 9 N -0.321 5.321 10 C 0.027 3.973 11 C -0.195 4.195 12 H 0.121 0.879 13 C -0.200 4.200 14 H 0.124 0.876 15 C 0.039 3.961 16 C -0.009 4.009 17 H 0.152 0.848 18 N -0.346 5.346 19 C 0.305 3.695 20 O -0.386 6.386 21 C -0.064 4.064 22 H 0.103 0.897 23 C -0.154 4.154 24 C -0.159 4.159 25 C -0.105 4.105 26 N -0.205 5.205 27 C -0.131 4.131 28 C 0.408 3.592 29 F -0.168 7.168 30 F -0.166 7.166 31 F -0.147 7.147 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.232 0.768 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.015 -21.080 13.856 25.406 hybrid contribution 0.506 -1.663 1.164 2.092 sum -2.508 -22.743 15.020 27.370 Atomic orbital electron populations 1.70732 1.06554 1.30431 1.47995 1.25893 0.96601 1.01272 0.98980 0.83449 0.74496 0.75523 0.76456 1.22054 1.21889 1.21087 1.19736 0.97216 0.86786 1.42241 0.91728 1.45253 1.37296 1.00150 1.49370 1.21137 0.98700 0.86102 0.91334 1.24319 0.92604 1.02087 1.00468 0.87864 1.25068 1.04619 0.90975 0.99288 0.87621 1.21025 0.90792 0.94288 0.89969 1.22499 0.99592 0.86072 0.92707 0.84769 1.45303 1.27234 1.30940 1.31141 1.20128 0.81832 0.81358 0.86147 1.90760 1.37399 1.71955 1.38459 1.22636 0.92606 0.93642 0.97505 0.89685 1.22302 0.95127 0.94163 1.03769 1.22283 0.94212 0.96879 1.02535 1.23482 0.96909 0.93508 0.96607 1.64928 0.99823 1.03847 1.51938 1.23418 0.88973 1.00308 1.00384 1.20264 0.84015 0.78756 0.76212 1.93145 1.95586 1.39767 1.88338 1.93190 1.50158 1.85644 1.87609 1.93250 1.96560 1.96301 1.28628 0.91916 0.95570 0.92773 0.91399 0.95381 0.76833 0.89865 0.89879 0.90269 0.90499 0.88488 0.92842 0.89968 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.82 12.82 55.49 0.71 -27.10 16 2 C -0.03 -0.73 5.12 -17.43 -0.09 -0.82 16 3 Si 1.07 25.21 29.98 -169.99 -5.10 20.12 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.33 -9.37 10.19 -15.06 -0.15 -9.52 16 8 H 0.06 1.80 7.94 -52.49 -0.42 1.39 16 9 N -0.60 -15.14 3.23 -169.11 -0.55 -15.68 16 10 C 0.15 3.21 7.04 -2.41 -0.02 3.19 16 11 C -0.17 -2.90 6.91 -89.22 -0.62 -3.52 16 12 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 13 C -0.18 -3.17 7.22 -87.20 -0.63 -3.80 16 14 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 15 C 0.17 3.83 5.01 -2.62 -0.01 3.82 16 16 C 0.10 1.52 6.20 -65.69 -0.41 1.12 16 17 H 0.13 2.44 7.40 -51.93 -0.38 2.06 16 18 N -0.70 -8.14 5.51 -51.65 -0.28 -8.42 16 19 C 0.52 6.47 6.84 -10.99 -0.08 6.40 16 20 O -0.51 -8.73 15.32 5.55 0.09 -8.64 16 21 C 0.05 0.40 2.67 -67.21 -0.18 0.22 16 22 H 0.09 0.52 8.00 -51.93 -0.42 0.11 16 23 C -0.12 -0.72 6.47 -25.35 -0.16 -0.89 16 24 C -0.12 -0.67 7.00 -25.36 -0.18 -0.85 16 25 C 0.02 0.15 5.42 -2.19 -0.01 0.14 16 26 N -0.48 -4.55 4.54 -223.49 -1.02 -5.57 16 27 C 0.00 -0.01 4.74 -3.82 -0.02 -0.02 16 28 C 0.46 4.77 3.28 37.16 0.12 4.89 16 29 F -0.19 -1.80 14.79 2.25 0.03 -1.77 16 30 F -0.18 -1.94 17.32 2.25 0.04 -1.90 16 31 F -0.17 -2.20 17.24 2.25 0.04 -2.16 16 32 H 0.27 8.24 6.41 -40.82 -0.26 7.98 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.73 7.47 -51.93 -0.39 1.34 16 36 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 37 H 0.40 3.40 8.81 -40.82 -0.36 3.04 16 38 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.10 0.72 6.78 -51.93 -0.35 0.37 16 43 H 0.05 0.29 7.76 -51.93 -0.40 -0.12 16 44 H 0.08 0.50 7.77 -51.93 -0.40 0.09 16 45 H 0.13 1.27 7.29 -51.93 -0.38 0.89 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -34.11 374.30 -9.15 -43.26 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.32 Total: 1.87 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.43 Total: 0.36 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -1.13 Total: -56.77 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.11 Total: -5.83 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.10 Total: 20.12 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.11 -9.15 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962766365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.918 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds