Wall clock time and date at job start Wed Apr 1 2020 04:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00296 * 2 1 4 4 H 1.48501 * 109.46843 * 269.99979 * 3 2 1 5 5 H 1.48498 * 109.47072 * 150.00081 * 3 2 1 6 6 H 1.48498 * 109.47087 * 29.99688 * 3 2 1 7 7 C 1.38815 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99809 * 155.61667 * 7 2 1 9 9 N 1.36937 * 119.99944 * 335.61437 * 7 2 1 10 10 C 1.48141 * 127.83847 * 158.93083 * 9 7 2 11 11 C 1.54389 * 104.61972 * 140.41544 * 10 9 7 12 12 H 1.08995 * 117.61518 * 244.78380 * 11 10 9 13 13 C 1.54281 * 104.95956 * 23.86679 * 11 10 9 14 14 H 1.08998 * 121.81770 * 222.17270 * 13 11 10 15 15 C 1.48145 * 127.83974 * 338.61234 * 9 7 2 16 16 C 1.53003 * 118.12264 * 89.21099 * 11 10 9 17 17 H 1.09001 * 117.44242 * 16.10274 * 16 11 10 18 18 N 1.46499 * 117.44409 * 160.81259 * 16 11 10 19 19 C 1.34773 * 119.99942 * 205.00138 * 18 16 11 20 20 O 1.21286 * 119.99793 * 359.97438 * 19 18 16 21 21 C 1.50695 * 120.00046 * 180.02562 * 19 18 16 22 22 H 1.08993 * 110.37100 * 60.89112 * 21 19 18 23 23 C 1.54383 * 110.41218 * 298.53948 * 21 19 18 24 24 C 1.54252 * 105.06305 * 217.36909 * 23 21 19 25 25 C 1.54373 * 105.06291 * 0.02562 * 24 23 21 26 26 N 1.48559 * 104.59545 * 23.85080 * 25 24 23 27 27 C 1.46903 * 111.00186 * 200.96269 * 26 25 24 28 28 C 1.52995 * 109.47135 * 285.41654 * 27 26 25 29 29 F 1.39908 * 109.47031 * 59.99933 * 28 27 26 30 30 F 1.39898 * 109.47411 * 180.02562 * 28 27 26 31 31 F 1.39896 * 109.47360 * 300.00236 * 28 27 26 32 32 H 0.96998 * 120.00528 * 174.47574 * 1 2 3 33 33 H 1.09000 * 110.40761 * 259.20014 * 10 9 7 34 34 H 1.09005 * 110.40589 * 21.62995 * 10 9 7 35 35 H 1.09003 * 110.40893 * 338.36893 * 15 9 7 36 36 H 1.09003 * 110.41009 * 100.80005 * 15 9 7 37 37 H 0.97003 * 119.99850 * 24.99246 * 18 16 11 38 38 H 1.09004 * 110.32080 * 336.27170 * 23 21 19 39 39 H 1.09002 * 110.32005 * 98.36398 * 23 21 19 40 40 H 1.09009 * 110.32304 * 118.89350 * 24 23 21 41 41 H 1.08995 * 110.32837 * 240.99996 * 24 23 21 42 42 H 1.08999 * 110.41963 * 142.62856 * 25 24 23 43 43 H 1.09004 * 110.41201 * 264.95756 * 25 24 23 44 44 H 1.08997 * 109.46971 * 45.42067 * 27 26 25 45 45 H 1.08999 * 109.47076 * 165.42050 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 3.5479 1.4400 0.7000 6 1 1.4478 2.6527 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0180 -1.2441 -0.3856 9 7 1.4171 -2.3350 0.4907 10 6 1.7764 -3.7440 0.2078 11 6 1.6233 -4.4651 1.5644 12 1 2.5222 -4.8800 2.0202 13 6 0.6305 -3.5982 2.3664 14 1 0.7823 -3.3795 3.4233 15 6 0.2747 -2.4294 1.4292 16 6 0.2569 -5.0566 1.9166 17 1 -0.4602 -5.1825 1.1054 18 7 0.2145 -6.0833 2.9608 19 6 -0.7901 -6.9815 2.9823 20 8 -1.6592 -6.9395 2.1374 21 6 -0.8340 -8.0372 4.0567 22 1 -0.9040 -7.5742 5.0409 23 6 0.4146 -8.9414 3.9746 24 6 -0.0931 -10.3578 4.3142 25 6 -1.6059 -10.1906 4.5723 26 7 -1.9781 -8.9581 3.8311 27 6 -3.2256 -8.3855 4.3545 28 6 -4.4107 -9.2341 3.8898 29 9 -4.2625 -10.5418 4.3646 30 9 -5.5988 -8.6885 4.3877 31 9 -4.4546 -9.2479 2.4916 32 1 -0.4851 -0.8361 -0.0809 33 1 1.0942 -4.1698 -0.5280 34 1 2.8060 -3.8105 -0.1439 35 1 0.1726 -1.5051 1.9979 36 1 -0.6456 -2.6467 0.8870 37 1 0.9095 -6.1166 3.6367 38 1 0.8319 -8.9199 2.9678 39 1 1.1622 -8.6212 4.7004 40 1 0.0750 -11.0318 3.4741 41 1 0.4058 -10.7349 5.2069 42 1 -2.1550 -11.0482 4.1838 43 1 -1.7984 -10.0680 5.6382 44 1 -3.1914 -8.3747 5.4439 45 1 -3.3410 -7.3667 3.9846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962766365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:03 Heat of formation + Delta-G solvation = -141.270239 kcal Electronic energy + Delta-G solvation = -31072.908016 eV Core-core repulsion = 26290.245464 eV Total energy + Delta-G solvation = -4782.662552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.09173 -48.65255 -48.54316 -41.47547 -40.33831 -38.88813 -36.25997 -34.64094 -33.84419 -32.09538 -30.35634 -29.19051 -29.03295 -27.33888 -24.75496 -24.00974 -22.97864 -22.09640 -21.93037 -21.15136 -20.94424 -19.58072 -19.53234 -19.48840 -18.66557 -18.15089 -17.71817 -16.84270 -16.41956 -15.98532 -15.76754 -15.67745 -15.61943 -15.43574 -15.34593 -15.10321 -15.03832 -14.99941 -14.76434 -14.75521 -14.48843 -14.35428 -13.84558 -13.66407 -13.44042 -13.32829 -13.03941 -12.68366 -12.60956 -12.53719 -12.35345 -12.31114 -12.16721 -11.90092 -11.80197 -11.65269 -11.56051 -10.99218 -10.81240 -10.62123 -9.77543 -9.69295 -9.11181 -8.39953 -5.42437 1.48304 1.57078 1.61299 1.66657 1.82500 1.83787 2.52277 2.62135 2.68801 2.81970 3.03839 3.16651 3.34565 3.43039 3.49012 3.53686 3.66690 3.79920 3.89440 3.99119 4.01645 4.07685 4.21647 4.26677 4.27527 4.31619 4.50474 4.65254 4.70043 4.76623 4.85110 4.87034 4.98327 4.98908 5.10548 5.17364 5.21210 5.21806 5.44170 5.51195 5.61242 5.66734 6.23688 6.52008 6.78169 7.22655 7.62134 8.29257 8.95920 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.002187 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.975021 B =12802.067404 C =13765.494128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.082 4.082 3 Si 1.125 2.875 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.290 1.290 7 C -0.340 4.340 8 H 0.065 0.935 9 N -0.622 5.622 10 C 0.144 3.856 11 C -0.151 4.151 12 H 0.143 0.857 13 C -0.180 4.180 14 H 0.133 0.867 15 C 0.169 3.831 16 C 0.121 3.879 17 H 0.104 0.896 18 N -0.679 5.679 19 C 0.518 3.482 20 O -0.565 6.565 21 C 0.056 3.944 22 H 0.120 0.880 23 C -0.111 4.111 24 C -0.116 4.116 25 C 0.022 3.978 26 N -0.513 5.513 27 C 0.005 3.995 28 C 0.459 3.541 29 F -0.182 7.182 30 F -0.188 7.188 31 F -0.189 7.189 32 H 0.252 0.748 33 H 0.014 0.986 34 H 0.062 0.938 35 H 0.036 0.964 36 H 0.001 0.999 37 H 0.420 0.580 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.117 0.883 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.250 -24.364 18.056 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.277 4.277 3 Si 0.948 3.052 4 H -0.208 1.208 5 H -0.196 1.196 6 H -0.216 1.216 7 C -0.468 4.468 8 H 0.083 0.917 9 N -0.347 5.347 10 C 0.019 3.981 11 C -0.172 4.172 12 H 0.161 0.839 13 C -0.202 4.202 14 H 0.151 0.849 15 C 0.043 3.957 16 C 0.013 3.987 17 H 0.122 0.878 18 N -0.330 5.330 19 C 0.305 3.695 20 O -0.442 6.442 21 C -0.055 4.055 22 H 0.138 0.862 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.105 4.105 26 N -0.238 5.238 27 C -0.125 4.125 28 C 0.404 3.596 29 F -0.164 7.164 30 F -0.169 7.169 31 F -0.171 7.171 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.258 0.742 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.135 0.865 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.582 -22.728 16.879 28.316 hybrid contribution -0.309 -1.289 0.150 1.334 sum -0.891 -24.016 17.029 29.455 Atomic orbital electron populations 1.70863 1.07701 1.29370 1.51102 1.27416 0.96624 1.04974 0.98700 0.82752 0.73968 0.71338 0.77123 1.20799 1.19559 1.21563 1.20065 0.97242 0.88039 1.41459 0.91697 1.45555 1.37537 1.01341 1.50270 1.21289 0.98687 0.84401 0.93726 1.24173 0.94334 1.01248 0.97455 0.83931 1.24805 1.05974 0.89967 0.99429 0.84916 1.20816 0.89450 0.95269 0.90172 1.21959 0.98150 0.85787 0.92762 0.87818 1.45076 1.27938 1.29517 1.30461 1.21025 0.80597 0.81560 0.86314 1.90753 1.39383 1.73293 1.40815 1.22691 0.93341 0.92642 0.96867 0.86237 1.22368 0.94622 0.94030 1.03915 1.22293 0.93387 0.96359 1.03399 1.23529 0.97629 0.91837 0.97458 1.64823 1.00232 1.05088 1.53664 1.23390 0.88203 0.98750 1.02190 1.20591 0.84575 0.79263 0.75147 1.93149 1.95569 1.39543 1.88098 1.93178 1.50582 1.85702 1.87471 1.93201 1.96698 1.96450 1.30748 0.93780 0.96807 0.91929 0.94542 0.98169 0.74228 0.91586 0.86435 0.91269 0.87818 0.89719 0.90593 0.86483 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.88 12.82 21.65 0.28 -59.60 16 2 C -0.08 -4.77 5.12 84.86 0.43 -4.34 16 3 Si 1.13 51.25 29.98 68.60 2.06 53.31 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 7 C -0.34 -19.50 10.19 84.03 0.86 -18.65 16 8 H 0.07 3.64 7.94 -2.91 -0.02 3.61 16 9 N -0.62 -32.34 3.23 -688.93 -2.22 -34.57 16 10 C 0.14 6.02 7.04 86.54 0.61 6.63 16 11 C -0.15 -4.74 6.91 -9.89 -0.07 -4.81 16 12 H 0.14 3.44 8.14 -2.39 -0.02 3.42 16 13 C -0.18 -6.25 7.22 -8.58 -0.06 -6.31 16 14 H 0.13 3.92 8.14 -2.39 -0.02 3.90 16 15 C 0.17 8.16 5.01 86.40 0.43 8.59 16 16 C 0.12 3.66 6.20 46.44 0.29 3.95 16 17 H 0.10 3.90 7.40 -2.39 -0.02 3.88 16 18 N -0.68 -13.97 5.51 -435.70 -2.40 -16.37 16 19 C 0.52 11.97 6.84 87.66 0.60 12.57 16 20 O -0.57 -19.50 15.32 -3.05 -0.05 -19.54 16 21 C 0.06 0.74 2.67 44.31 0.12 0.86 16 22 H 0.12 0.84 8.00 -2.39 -0.02 0.82 16 23 C -0.11 -0.94 6.47 31.49 0.20 -0.73 16 24 C -0.12 -0.87 7.00 31.48 0.22 -0.65 16 25 C 0.02 0.23 5.42 86.45 0.47 0.70 16 26 N -0.51 -8.67 4.54 -860.98 -3.91 -12.58 16 27 C 0.00 0.08 4.74 86.30 0.41 0.48 16 28 C 0.46 9.27 3.28 71.98 0.24 9.51 16 29 F -0.18 -3.33 14.79 44.97 0.67 -2.66 16 30 F -0.19 -3.89 17.32 44.97 0.78 -3.11 16 31 F -0.19 -5.18 17.24 44.97 0.78 -4.41 16 32 H 0.25 16.37 6.41 -92.71 -0.59 15.78 16 33 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.04 1.95 7.47 -2.39 -0.02 1.93 16 36 H 0.00 0.03 7.67 -2.39 -0.02 0.01 16 37 H 0.42 5.19 8.81 -92.71 -0.82 4.37 16 38 H 0.07 0.81 7.85 -2.38 -0.02 0.80 16 39 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.08 1.11 6.78 -2.39 -0.02 1.09 16 43 H 0.08 0.47 7.76 -2.39 -0.02 0.46 16 44 H 0.12 1.01 7.77 -2.39 -0.02 0.99 16 45 H 0.11 2.14 7.29 -2.39 -0.02 2.12 16 Total: -1.00 -80.11 374.30 1.11 -79.00 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.39 Total: 12.71 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 4.75 Total: 7.83 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -8.26 Total: -123.12 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 9 Polarization: -12.40 SS G_CDS: 2.22 Total: -10.18 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.06 Total: 53.31 kcal Total: -80.11 1.11 -79.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962766365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.269 kcal (2) G-P(sol) polarization free energy of solvation -80.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds