Wall clock time and date at job start Wed Apr 1 2020 05:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99693 * 2 1 4 4 H 1.48494 * 109.47193 * 239.99918 * 3 2 1 5 5 H 1.48506 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46780 * 120.00037 * 3 2 1 7 7 C 1.38810 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99703 * 164.16944 * 7 2 1 9 9 N 1.36933 * 119.99799 * 344.17075 * 7 2 1 10 10 C 1.47169 * 121.07824 * 153.72991 * 9 7 2 11 11 C 1.53284 * 108.55750 * 128.77198 * 10 9 7 12 12 O 1.43118 * 109.22348 * 53.02367 * 11 10 9 13 13 C 1.41881 * 114.39028 * 299.11904 * 12 11 10 14 14 C 1.54373 * 110.72567 * 296.61425 * 13 12 11 15 15 C 1.54470 * 102.95704 * 276.12309 * 14 13 12 16 16 N 1.47083 * 107.29033 * 338.85485 * 15 14 13 17 17 C 1.34781 * 125.63090 * 178.89416 * 16 15 14 18 18 O 1.21605 * 119.99943 * 179.69761 * 17 16 15 19 19 C 1.47392 * 119.99988 * 359.69346 * 17 16 15 20 20 C 1.47113 * 128.56673 * 0.12602 * 19 17 16 21 21 N 1.30013 * 105.32724 * 180.24330 * 20 19 17 22 22 O 1.20656 * 112.30218 * 359.77865 * 21 20 19 23 23 C 1.33487 * 113.16000 * 359.97438 * 22 21 20 24 24 C 1.50696 * 126.83192 * 179.97438 * 23 22 21 25 25 C 1.52996 * 117.49858 * 60.02290 * 24 23 22 26 26 C 1.53000 * 60.03589 * 252.47604 * 25 24 23 27 27 C 1.47577 * 108.73570 * 358.63260 * 16 15 14 28 28 C 1.47335 * 121.08140 * 333.75312 * 9 7 2 29 29 H 0.96998 * 120.00256 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.62695 * 248.48826 * 10 9 7 31 31 H 1.08999 * 109.62531 * 8.86702 * 10 9 7 32 32 H 1.08996 * 109.51376 * 172.95681 * 11 10 9 33 33 H 1.09009 * 109.50676 * 293.10427 * 11 10 9 34 34 H 1.08999 * 110.73217 * 34.67461 * 14 13 12 35 35 H 1.09001 * 110.72968 * 157.80153 * 14 13 12 36 36 H 1.09005 * 109.99090 * 219.37385 * 15 14 13 37 37 H 1.08991 * 109.77065 * 98.21878 * 15 14 13 38 38 H 1.07998 * 127.33369 * 0.02562 * 20 19 17 39 39 H 1.08998 * 115.55122 * 205.69721 * 24 23 22 40 40 H 1.08995 * 117.50036 * 359.97438 * 25 24 23 41 41 H 1.09006 * 117.49721 * 144.97882 * 25 24 23 42 42 H 1.08998 * 117.49748 * 107.49507 * 26 25 24 43 43 H 1.08998 * 117.50418 * 252.52812 * 26 25 24 44 44 H 1.09003 * 110.37139 * 142.38703 * 27 16 15 45 45 H 1.09005 * 110.37323 * 264.61568 * 27 16 15 46 46 H 1.09001 * 109.67074 * 109.40549 * 28 9 7 47 47 H 1.08997 * 109.69888 * 348.89190 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2851 2.7466 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0596 -1.2196 -0.2557 9 7 1.3647 -2.3656 0.3224 10 6 1.8350 -3.6628 -0.1896 11 6 1.9806 -4.6295 0.9911 12 8 0.7543 -4.6609 1.7284 13 6 0.3693 -3.4112 2.2787 14 6 1.4052 -2.9289 3.3167 15 6 0.9711 -3.6615 4.6055 16 7 -0.4396 -4.0424 4.4377 17 6 -1.1821 -4.7199 5.3356 18 8 -2.3456 -4.9768 5.0923 19 6 -0.5839 -5.1495 6.6123 20 6 0.7888 -4.9405 7.0983 21 7 0.8289 -5.5057 8.2684 22 8 -0.2288 -5.9984 8.5754 23 6 -1.1714 -5.8413 7.6434 24 6 -2.5948 -6.3319 7.7065 25 6 -3.4702 -5.8149 8.8498 26 6 -2.9723 -7.2616 8.8626 27 6 -0.9096 -3.5547 3.1265 28 6 0.1763 -2.3596 1.1933 29 1 -0.4850 0.8400 0.0004 30 1 1.1107 -4.0601 -0.9007 31 1 2.7988 -3.5343 -0.6820 32 1 2.2070 -5.6283 0.6181 33 1 2.7876 -4.2912 1.6411 34 1 2.4124 -3.2243 3.0226 35 1 1.3446 -1.8487 3.4491 36 1 1.0764 -2.9987 5.4644 37 1 1.5816 -4.5534 4.7460 38 1 1.5930 -4.4298 6.5896 39 1 -3.0753 -6.5057 6.7437 40 1 -3.0165 -5.1203 9.5566 41 1 -4.5266 -5.6482 8.6391 42 1 -2.1909 -7.5185 9.5778 43 1 -3.7009 -8.0465 8.6598 44 1 -1.5865 -4.2786 2.6728 45 1 -1.4048 -2.5898 3.2358 46 1 -0.7105 -2.5972 0.6057 47 1 0.0609 -1.3769 1.6506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972624386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:29 Heat of formation + Delta-G solvation = 56.084765 kcal Electronic energy + Delta-G solvation = -31545.651663 eV Core-core repulsion = 27313.403806 eV Total energy + Delta-G solvation = -4232.247857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.11312 -40.28107 -38.74324 -37.64317 -36.18457 -34.52150 -33.96202 -31.85812 -31.46262 -31.25875 -29.68144 -27.63272 -26.27136 -24.75014 -24.15285 -23.49377 -22.77981 -22.59480 -21.75473 -20.94344 -19.39648 -18.82742 -17.91599 -17.71808 -17.19189 -16.95576 -16.15136 -15.80956 -15.64087 -15.25988 -15.01852 -14.43781 -14.35587 -14.21485 -14.00228 -13.73120 -13.42099 -13.09713 -12.79150 -12.73046 -12.65933 -12.32511 -12.13687 -11.94719 -11.80795 -11.45517 -11.37493 -11.11946 -11.02276 -10.90423 -10.80105 -10.76336 -10.56675 -10.36357 -10.33845 -10.05956 -9.99700 -9.61285 -9.42950 -9.12318 -8.61172 -8.53593 -6.81501 -5.90952 -3.34563 0.84716 1.61578 2.50734 2.98244 3.14497 3.29983 3.36641 3.37040 3.49625 3.97233 4.02910 4.14055 4.31305 4.36693 4.46348 4.56628 4.64601 4.78740 4.97195 5.05084 5.15006 5.24688 5.26964 5.28109 5.34559 5.50248 5.51883 5.57528 5.59578 5.72905 5.74755 5.80004 5.80650 5.90941 5.98940 6.08745 6.17948 6.24347 6.36366 6.43767 6.57049 6.73415 6.99182 7.36957 7.52694 7.64648 7.86090 7.94627 8.13829 8.25598 9.03965 9.66677 10.24275 11.17419 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.002664 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.492493 B =10507.760033 C =10625.420561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.592 5.592 10 C 0.109 3.891 11 C 0.046 3.954 12 O -0.374 6.374 13 C 0.085 3.915 14 C -0.145 4.145 15 C 0.096 3.904 16 N -0.600 5.600 17 C 0.612 3.388 18 O -0.537 6.537 19 C -0.247 4.247 20 C 0.018 3.982 21 N -0.356 5.356 22 O 0.090 5.910 23 C 0.076 3.924 24 C -0.089 4.089 25 C -0.155 4.155 26 C -0.167 4.167 27 C 0.126 3.874 28 C 0.164 3.836 29 H 0.257 0.743 30 H 0.027 0.973 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.207 0.793 39 H 0.154 0.846 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.031 0.969 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 -11.271 15.318 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.316 5.316 10 C -0.018 4.018 11 C -0.032 4.032 12 O -0.293 6.293 13 C 0.043 3.957 14 C -0.183 4.183 15 C -0.027 4.027 16 N -0.333 5.333 17 C 0.400 3.600 18 O -0.416 6.416 19 C -0.254 4.254 20 C -0.165 4.165 21 N -0.062 5.062 22 O 0.031 5.969 23 C 0.012 3.988 24 C -0.108 4.108 25 C -0.192 4.192 26 C -0.204 4.204 27 C 0.004 3.996 28 C 0.037 3.963 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.223 0.777 39 H 0.171 0.829 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.049 0.951 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.633 -11.605 16.181 19.979 hybrid contribution 0.550 1.423 -0.921 1.782 sum -1.084 -10.181 15.261 18.377 Atomic orbital electron populations 1.69987 1.05200 1.25879 1.53675 1.25046 0.95351 0.98398 1.00700 0.86351 0.78892 0.83222 0.78186 1.20836 1.21540 1.20962 1.19117 0.92230 0.84197 1.42767 0.91389 1.44055 1.32271 1.01437 1.53838 1.21597 0.98705 0.87588 0.93875 1.23100 0.86233 0.99746 0.94073 1.87657 1.41106 1.30266 1.70229 1.22705 0.92309 0.86769 0.93883 1.23059 1.00931 1.01294 0.92977 1.22403 0.81879 0.98884 0.99541 1.48253 1.12294 1.54600 1.18137 1.16293 0.84798 0.77620 0.81249 1.90772 1.15976 1.56959 1.77879 1.21963 0.94638 1.10096 0.98732 1.26883 0.97303 1.00417 0.91858 1.73675 1.02589 1.12958 1.16942 1.84528 1.14160 1.58187 1.40034 1.23716 0.92316 0.95273 0.87545 1.20753 0.86069 1.05904 0.98040 1.23093 1.00006 0.97249 0.98886 1.23137 1.03868 0.93832 0.99570 1.22162 0.96319 1.00448 0.80629 1.21135 0.89415 0.96472 0.89258 0.93335 0.95535 0.91881 0.89942 0.93478 0.89339 0.89192 0.91371 0.91414 0.77664 0.82859 0.88219 0.87166 0.87803 0.87350 0.89449 0.89318 0.95103 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 11.11 55.49 0.62 -24.15 16 2 C 0.00 0.10 4.98 -17.43 -0.09 0.02 16 3 Si 0.90 20.57 29.58 -169.99 -5.03 15.54 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.25 -6.49 9.66 -15.06 -0.15 -6.63 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -13.83 2.98 -172.24 -0.51 -14.34 16 10 C 0.11 2.15 6.71 -3.53 -0.02 2.13 16 11 C 0.05 0.78 6.78 37.30 0.25 1.03 16 12 O -0.37 -6.91 10.28 -35.22 -0.36 -7.27 16 13 C 0.09 1.54 0.84 -89.65 -0.08 1.46 16 14 C -0.14 -2.25 5.87 -25.24 -0.15 -2.40 16 15 C 0.10 1.25 5.05 -2.95 -0.01 1.24 16 16 N -0.60 -9.21 3.33 -172.03 -0.57 -9.79 16 17 C 0.61 9.64 7.85 -12.53 -0.10 9.54 16 18 O -0.54 -9.61 15.59 5.27 0.08 -9.53 16 19 C -0.25 -3.33 6.37 -102.89 -0.66 -3.98 16 20 C 0.02 0.21 10.76 -14.72 -0.16 0.05 16 21 N -0.36 -4.51 12.01 31.81 0.38 -4.13 16 22 O 0.09 1.08 10.86 18.67 0.20 1.29 16 23 C 0.08 0.91 7.01 -34.63 -0.24 0.67 16 24 C -0.09 -0.89 5.75 -91.73 -0.53 -1.41 16 25 C -0.16 -1.19 10.23 -26.73 -0.27 -1.46 16 26 C -0.17 -1.18 10.19 -26.69 -0.27 -1.45 16 27 C 0.13 2.14 6.08 -2.87 -0.02 2.12 16 28 C 0.16 3.62 4.06 -3.92 -0.02 3.60 16 29 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.76 6.23 -51.92 -0.32 0.43 16 34 H 0.09 1.37 6.08 -51.93 -0.32 1.06 16 35 H 0.09 1.47 7.82 -51.93 -0.41 1.07 16 36 H 0.07 0.75 7.11 -51.93 -0.37 0.39 16 37 H 0.07 0.80 6.91 -51.93 -0.36 0.45 16 38 H 0.21 1.98 5.14 -52.49 -0.27 1.71 16 39 H 0.15 1.71 6.95 -51.93 -0.36 1.35 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.70 8.02 -51.93 -0.42 0.28 16 43 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.56 8.06 -51.93 -0.42 1.14 16 45 H 0.09 1.47 8.00 -51.93 -0.42 1.05 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.10 2.38 5.96 -51.93 -0.31 2.07 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -30.40 374.53 -8.51 -38.91 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.46 Total: 3.32 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -2.50 Total: 4.51 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.09 Total: -52.41 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.08 Total: -15.52 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.40 -8.51 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972624386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.998 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds