Wall clock time and date at job start Wed Apr 1 2020 05:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99693 * 2 1 4 4 H 1.48494 * 109.47193 * 239.99918 * 3 2 1 5 5 H 1.48506 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46780 * 120.00037 * 3 2 1 7 7 C 1.38810 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99703 * 164.16944 * 7 2 1 9 9 N 1.36933 * 119.99799 * 344.17075 * 7 2 1 10 10 C 1.47169 * 121.07824 * 153.72991 * 9 7 2 11 11 C 1.53284 * 108.55750 * 128.77198 * 10 9 7 12 12 O 1.43118 * 109.22348 * 53.02367 * 11 10 9 13 13 C 1.41881 * 114.39028 * 299.11904 * 12 11 10 14 14 C 1.54373 * 110.72567 * 296.61425 * 13 12 11 15 15 C 1.54470 * 102.95704 * 276.12309 * 14 13 12 16 16 N 1.47083 * 107.29033 * 338.85485 * 15 14 13 17 17 C 1.34781 * 125.63090 * 178.89416 * 16 15 14 18 18 O 1.21605 * 119.99943 * 179.69761 * 17 16 15 19 19 C 1.47392 * 119.99988 * 359.69346 * 17 16 15 20 20 C 1.47113 * 128.56673 * 0.12602 * 19 17 16 21 21 N 1.30013 * 105.32724 * 180.24330 * 20 19 17 22 22 O 1.20656 * 112.30218 * 359.77865 * 21 20 19 23 23 C 1.33487 * 113.16000 * 359.97438 * 22 21 20 24 24 C 1.50696 * 126.83192 * 179.97438 * 23 22 21 25 25 C 1.52996 * 117.49858 * 60.02290 * 24 23 22 26 26 C 1.53000 * 60.03589 * 252.47604 * 25 24 23 27 27 C 1.47577 * 108.73570 * 358.63260 * 16 15 14 28 28 C 1.47335 * 121.08140 * 333.75312 * 9 7 2 29 29 H 0.96998 * 120.00256 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.62695 * 248.48826 * 10 9 7 31 31 H 1.08999 * 109.62531 * 8.86702 * 10 9 7 32 32 H 1.08996 * 109.51376 * 172.95681 * 11 10 9 33 33 H 1.09009 * 109.50676 * 293.10427 * 11 10 9 34 34 H 1.08999 * 110.73217 * 34.67461 * 14 13 12 35 35 H 1.09001 * 110.72968 * 157.80153 * 14 13 12 36 36 H 1.09005 * 109.99090 * 219.37385 * 15 14 13 37 37 H 1.08991 * 109.77065 * 98.21878 * 15 14 13 38 38 H 1.07998 * 127.33369 * 0.02562 * 20 19 17 39 39 H 1.08998 * 115.55122 * 205.69721 * 24 23 22 40 40 H 1.08995 * 117.50036 * 359.97438 * 25 24 23 41 41 H 1.09006 * 117.49721 * 144.97882 * 25 24 23 42 42 H 1.08998 * 117.49748 * 107.49507 * 26 25 24 43 43 H 1.08998 * 117.50418 * 252.52812 * 26 25 24 44 44 H 1.09003 * 110.37139 * 142.38703 * 27 16 15 45 45 H 1.09005 * 110.37323 * 264.61568 * 27 16 15 46 46 H 1.09001 * 109.67074 * 109.40549 * 28 9 7 47 47 H 1.08997 * 109.69888 * 348.89190 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2851 2.7466 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0596 -1.2196 -0.2557 9 7 1.3647 -2.3656 0.3224 10 6 1.8350 -3.6628 -0.1896 11 6 1.9806 -4.6295 0.9911 12 8 0.7543 -4.6609 1.7284 13 6 0.3693 -3.4112 2.2787 14 6 1.4052 -2.9289 3.3167 15 6 0.9711 -3.6615 4.6055 16 7 -0.4396 -4.0424 4.4377 17 6 -1.1821 -4.7199 5.3356 18 8 -2.3456 -4.9768 5.0923 19 6 -0.5839 -5.1495 6.6123 20 6 0.7888 -4.9405 7.0983 21 7 0.8289 -5.5057 8.2684 22 8 -0.2288 -5.9984 8.5754 23 6 -1.1714 -5.8413 7.6434 24 6 -2.5948 -6.3319 7.7065 25 6 -3.4702 -5.8149 8.8498 26 6 -2.9723 -7.2616 8.8626 27 6 -0.9096 -3.5547 3.1265 28 6 0.1763 -2.3596 1.1933 29 1 -0.4850 0.8400 0.0004 30 1 1.1107 -4.0601 -0.9007 31 1 2.7988 -3.5343 -0.6820 32 1 2.2070 -5.6283 0.6181 33 1 2.7876 -4.2912 1.6411 34 1 2.4124 -3.2243 3.0226 35 1 1.3446 -1.8487 3.4491 36 1 1.0764 -2.9987 5.4644 37 1 1.5816 -4.5534 4.7460 38 1 1.5930 -4.4298 6.5896 39 1 -3.0753 -6.5057 6.7437 40 1 -3.0165 -5.1203 9.5566 41 1 -4.5266 -5.6482 8.6391 42 1 -2.1909 -7.5185 9.5778 43 1 -3.7009 -8.0465 8.6598 44 1 -1.5865 -4.2786 2.6728 45 1 -1.4048 -2.5898 3.2358 46 1 -0.7105 -2.5972 0.6057 47 1 0.0609 -1.3769 1.6506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972624386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:28 Heat of formation + Delta-G solvation = 37.865794 kcal Electronic energy + Delta-G solvation = -31546.441697 eV Core-core repulsion = 27313.403806 eV Total energy + Delta-G solvation = -4233.037890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.04409 -41.62376 -40.08842 -38.36282 -37.52877 -36.26007 -34.95607 -33.24779 -32.96019 -32.54160 -30.98017 -29.19330 -27.84060 -25.98884 -25.14409 -24.97333 -23.88841 -23.32343 -23.09411 -22.11677 -20.66585 -20.10702 -18.92775 -18.91151 -18.81108 -17.87582 -17.60259 -16.97093 -16.76795 -16.59378 -16.34028 -16.09979 -15.77579 -15.27168 -15.18298 -15.11961 -14.77497 -14.56065 -14.41957 -14.03543 -13.71113 -13.64405 -13.31236 -13.06092 -12.77597 -12.71190 -12.63143 -12.47323 -12.45515 -12.27233 -12.19182 -12.17485 -11.87138 -11.82454 -11.52584 -11.50708 -11.23820 -11.15435 -10.75775 -10.46704 -10.33974 -9.75488 -8.71410 -7.88197 -5.34885 -0.11856 0.67435 1.48710 1.50484 1.51721 1.57372 1.87626 2.01419 2.49314 2.71570 2.81307 3.10053 3.17642 3.24805 3.34694 3.43046 3.52516 3.68573 3.82499 3.91811 3.97415 4.00559 4.15530 4.17240 4.28100 4.37554 4.43520 4.52451 4.56311 4.57392 4.67435 4.68842 4.73967 4.75141 4.90338 4.94206 4.99628 5.05049 5.09010 5.11179 5.18015 5.19892 5.26508 5.52756 5.63523 6.30635 6.33623 6.41059 6.90970 7.03890 7.08324 7.76613 8.31614 9.17924 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.002664 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.492493 B =10507.760033 C =10625.420561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.048 4.048 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.258 4.258 8 H 0.074 0.926 9 N -0.608 5.608 10 C 0.103 3.897 11 C 0.053 3.947 12 O -0.382 6.382 13 C 0.093 3.907 14 C -0.137 4.137 15 C 0.100 3.900 16 N -0.601 5.601 17 C 0.611 3.389 18 O -0.568 6.568 19 C -0.275 4.275 20 C 0.030 3.970 21 N -0.369 5.369 22 O 0.091 5.909 23 C 0.091 3.909 24 C -0.119 4.119 25 C -0.147 4.147 26 C -0.145 4.145 27 C 0.131 3.869 28 C 0.175 3.825 29 H 0.251 0.749 30 H 0.012 0.988 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.230 0.770 39 H 0.138 0.862 40 H 0.102 0.898 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.127 0.873 44 H 0.072 0.928 45 H 0.084 0.916 46 H -0.007 1.007 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -12.346 17.430 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.243 4.243 3 Si 0.794 3.206 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.199 1.199 7 C -0.387 4.387 8 H 0.092 0.908 9 N -0.332 5.332 10 C -0.023 4.023 11 C -0.024 4.024 12 O -0.302 6.302 13 C 0.051 3.949 14 C -0.175 4.175 15 C -0.022 4.022 16 N -0.333 5.333 17 C 0.401 3.599 18 O -0.449 6.449 19 C -0.282 4.282 20 C -0.152 4.152 21 N -0.076 5.076 22 O 0.034 5.966 23 C 0.026 3.974 24 C -0.138 4.138 25 C -0.185 4.185 26 C -0.182 4.182 27 C 0.008 3.992 28 C 0.049 3.951 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.246 0.754 39 H 0.155 0.845 40 H 0.121 0.879 41 H 0.140 0.860 42 H 0.129 0.871 43 H 0.145 0.855 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.011 0.989 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.140 -12.714 18.312 22.293 hybrid contribution -0.034 1.694 -1.647 2.363 sum 0.106 -11.020 16.665 19.979 Atomic orbital electron populations 1.70158 1.06643 1.26009 1.55444 1.25766 0.95980 1.01365 1.01188 0.85367 0.77511 0.79248 0.78461 1.20410 1.22494 1.19859 1.19458 0.92618 0.85099 1.41574 0.90792 1.44311 1.32206 1.02279 1.54436 1.21789 0.98594 0.86692 0.95187 1.23168 0.85919 1.00577 0.92756 1.87659 1.42111 1.29992 1.70402 1.22388 0.93902 0.85556 0.93067 1.22950 1.00359 1.00919 0.93260 1.22537 0.80603 1.00068 0.98973 1.48243 1.13253 1.54568 1.17266 1.16569 0.84464 0.77055 0.81804 1.90751 1.17363 1.58167 1.78631 1.21779 0.95888 1.12163 0.98367 1.27170 0.96995 0.99622 0.91399 1.73665 1.02887 1.13704 1.17363 1.84530 1.14041 1.58179 1.39868 1.24061 0.92859 0.93567 0.86890 1.20789 0.85420 1.09077 0.98558 1.23219 1.00157 0.97965 0.97114 1.23274 1.03818 0.93852 0.97224 1.21937 0.95648 0.99917 0.81687 1.20853 0.87906 0.96620 0.89740 0.94032 0.97018 0.90729 0.86683 0.91938 0.88600 0.90266 0.88625 0.89203 0.75410 0.84483 0.87922 0.86000 0.87083 0.85491 0.90984 0.89765 0.98936 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.19 11.11 21.65 0.24 -52.95 16 2 C -0.05 -2.51 4.98 84.86 0.42 -2.09 16 3 Si 0.97 42.56 29.58 68.60 2.03 44.59 16 4 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.26 -13.21 9.66 84.03 0.81 -12.39 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 9 N -0.61 -28.72 2.98 -698.86 -2.08 -30.80 16 10 C 0.10 4.01 6.71 86.35 0.58 4.59 16 11 C 0.05 1.66 6.78 72.08 0.49 2.15 16 12 O -0.38 -13.75 10.28 -148.95 -1.53 -15.29 16 13 C 0.09 3.35 0.84 -10.17 -0.01 3.34 16 14 C -0.14 -4.06 5.87 31.56 0.19 -3.88 16 15 C 0.10 2.36 5.05 86.77 0.44 2.80 16 16 N -0.60 -17.99 3.33 -816.44 -2.72 -20.71 16 17 C 0.61 19.00 7.85 86.65 0.68 19.68 16 18 O -0.57 -20.74 15.59 -4.05 -0.06 -20.81 16 19 C -0.27 -7.03 6.37 -18.74 -0.12 -7.15 16 20 C 0.03 0.65 10.76 87.29 0.94 1.59 16 21 N -0.37 -8.51 12.01 -54.19 -0.65 -9.16 16 22 O 0.09 2.01 10.86 77.04 0.84 2.84 16 23 C 0.09 2.07 7.01 25.48 0.18 2.25 16 24 C -0.12 -2.26 5.75 -11.52 -0.07 -2.33 16 25 C -0.15 -2.00 10.23 30.59 0.31 -1.68 16 26 C -0.14 -1.71 10.19 30.62 0.31 -1.40 16 27 C 0.13 4.54 6.08 86.55 0.53 5.07 16 28 C 0.18 8.07 4.06 86.01 0.35 8.42 16 29 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 2.69 7.96 -2.39 -0.02 2.67 16 32 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.06 1.80 6.23 -2.38 -0.01 1.79 16 34 H 0.10 2.71 6.08 -2.39 -0.01 2.70 16 35 H 0.08 2.54 7.82 -2.39 -0.02 2.52 16 36 H 0.10 1.79 7.11 -2.38 -0.02 1.77 16 37 H 0.09 1.79 6.91 -2.39 -0.02 1.77 16 38 H 0.23 3.52 5.14 -2.91 -0.01 3.51 16 39 H 0.14 3.10 6.95 -2.39 -0.02 3.08 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.11 1.18 8.02 -2.39 -0.02 1.16 16 43 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 2.69 8.06 -2.39 -0.02 2.67 16 45 H 0.08 2.95 8.00 -2.38 -0.02 2.93 16 46 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 47 H 0.07 3.74 5.96 -2.39 -0.01 3.73 16 Total: -1.00 -67.53 374.53 3.10 -64.43 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.01 Total: 18.90 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 6.03 Total: 18.95 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -5.21 Total: -113.63 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.76 Total: -33.25 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -67.53 3.10 -64.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972624386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.297 kcal (2) G-P(sol) polarization free energy of solvation -67.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds