Wall clock time and date at job start Wed Apr 1 2020 04:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00100 * 2 1 4 4 H 1.48493 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47164 * 300.00232 * 3 2 1 6 6 H 1.48501 * 109.46939 * 59.99948 * 3 2 1 7 7 C 1.38809 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99840 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.49295 * 127.10179 * 359.97114 * 9 7 2 11 11 C 1.56235 * 106.50818 * 171.38127 * 10 9 7 12 12 C 1.52136 * 100.81001 * 336.54948 * 11 10 9 13 13 N 1.46500 * 111.09628 * 286.02899 * 12 11 10 14 14 C 1.34770 * 119.99903 * 298.98630 * 13 12 11 15 15 O 1.21499 * 120.00238 * 359.97438 * 14 13 12 16 16 C 1.48328 * 119.99963 * 180.02562 * 14 13 12 17 17 N 1.31607 * 127.15777 * 359.97438 * 16 14 13 18 18 O 1.21563 * 111.54777 * 179.97438 * 17 16 14 19 19 C 1.32816 * 111.51807 * 359.95952 * 18 17 16 20 20 C 1.35710 * 106.70286 * 0.07854 * 19 18 17 21 21 C 1.50031 * 123.86154 * 179.80259 * 20 19 18 22 22 O 1.43612 * 107.82866 * 345.28048 * 21 20 19 23 23 C 1.43153 * 114.41005 * 50.03835 * 22 21 20 24 24 C 1.50665 * 130.82666 * 180.10467 * 19 18 17 25 25 C 1.51232 * 122.09768 * 151.84548 * 12 11 10 26 26 C 1.56590 * 104.17632 * 218.95046 * 25 12 11 27 27 C 1.56285 * 106.07029 * 6.57533 * 26 25 12 28 28 C 1.42706 * 127.10567 * 180.02562 * 9 7 2 29 29 H 1.08999 * 108.16363 * 103.44108 * 28 9 7 30 30 H 0.96999 * 119.99875 * 359.97438 * 1 2 3 31 31 H 1.08994 * 110.04932 * 52.11843 * 10 9 7 32 32 H 1.08999 * 110.05264 * 290.63770 * 10 9 7 33 33 H 1.09003 * 111.14744 * 218.66856 * 11 10 9 34 34 H 1.08994 * 111.15418 * 94.43816 * 11 10 9 35 35 H 0.97004 * 119.99764 * 118.98805 * 13 12 11 36 36 H 1.09006 * 109.79259 * 104.86871 * 21 20 19 37 37 H 1.08996 * 109.78937 * 225.69797 * 21 20 19 38 38 H 1.08997 * 109.48454 * 169.47473 * 23 22 21 39 39 H 1.09003 * 109.40330 * 49.68157 * 23 22 21 40 40 H 1.09002 * 109.82298 * 283.61999 * 24 19 18 41 41 H 1.08998 * 109.82544 * 44.48206 * 24 19 18 42 42 H 1.08997 * 110.41223 * 336.86421 * 25 12 11 43 43 H 1.08999 * 110.40577 * 99.30737 * 25 12 11 44 44 H 1.09003 * 109.73398 * 247.61071 * 26 25 12 45 45 H 1.08994 * 110.50444 * 125.96229 * 26 25 12 46 46 H 1.08998 * 110.96830 * 266.56570 * 27 26 25 47 47 H 1.08994 * 110.96674 * 142.79766 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1559 -2.5726 -0.0017 11 6 -0.4134 -4.0969 -0.2276 12 6 0.8805 -4.5060 -0.9154 13 7 0.9156 -4.0282 -2.2998 14 6 -0.0180 -4.4419 -3.1793 15 8 -0.8885 -5.2115 -2.8242 16 6 0.0179 -3.9586 -4.5812 17 7 0.8905 -3.1301 -5.1143 18 8 0.6530 -2.9266 -6.2890 19 6 -0.4178 -3.6003 -6.6933 20 6 -0.8735 -4.2907 -5.6175 21 6 -2.0799 -5.1822 -5.6460 22 8 -2.8133 -4.8913 -6.8460 23 6 -2.0205 -4.8894 -8.0380 24 6 -1.0878 -3.6684 -8.0411 25 6 1.4385 -5.9076 -0.8095 26 6 2.9854 -5.6964 -0.6883 27 6 3.2028 -4.1539 -0.5622 28 6 1.8807 -3.7027 -0.0018 29 1 1.7903 -4.1098 1.0053 30 1 -0.4850 0.8400 0.0004 31 1 -0.6045 -1.9942 -0.8093 32 1 -0.5714 -2.2616 0.9568 33 1 -1.2728 -4.2584 -0.8784 34 1 -0.5370 -4.6197 0.7208 35 1 1.6109 -3.4141 -2.5834 36 1 -1.7672 -6.2264 -5.6485 37 1 -2.7047 -4.9855 -4.7749 38 1 -2.6742 -4.8478 -8.9093 39 1 -1.4239 -5.8008 -8.0777 40 1 -1.6671 -2.7611 -8.2122 41 1 -0.3360 -3.7795 -8.8225 42 1 1.0606 -6.4006 0.0862 43 1 1.1854 -6.4856 -1.6982 44 1 3.4796 -6.0734 -1.5838 45 1 3.3719 -6.2038 0.1955 46 1 3.3865 -3.7048 -1.5383 47 1 4.0160 -3.9298 0.1280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992490085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:34 Heat of formation + Delta-G solvation = 31.203661 kcal Electronic energy + Delta-G solvation = -32315.500570 eV Core-core repulsion = 28082.173787 eV Total energy + Delta-G solvation = -4233.326782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.16020 -40.51501 -39.09502 -38.14533 -34.46239 -34.09775 -33.45998 -33.01310 -31.73043 -30.73771 -29.86063 -26.98372 -26.75349 -25.94410 -24.52554 -24.18547 -23.89683 -21.27575 -20.62442 -20.28719 -19.60669 -18.72714 -18.01072 -17.87402 -16.91222 -16.50707 -16.20842 -15.82252 -15.66653 -15.07622 -14.85411 -14.64511 -14.44390 -14.21219 -13.95698 -13.89583 -13.60248 -13.45394 -13.04363 -12.61085 -12.35794 -12.03426 -11.97433 -11.58583 -11.44476 -11.39987 -11.38876 -11.02267 -10.96224 -10.86939 -10.57972 -10.44135 -10.28456 -10.11157 -10.07465 -10.01758 -9.81456 -9.72064 -9.28323 -9.25661 -8.68351 -8.58866 -6.88392 -5.75771 -3.10708 1.12287 1.55284 2.68711 3.22303 3.37610 3.40351 3.43229 3.45607 3.45636 4.05990 4.26910 4.43282 4.48864 4.57802 4.63392 4.76712 4.87270 5.10189 5.14936 5.16092 5.19057 5.32997 5.38773 5.45868 5.47294 5.56967 5.60172 5.66956 5.77005 5.84699 5.90159 5.93350 6.08564 6.19824 6.24181 6.30751 6.36986 6.45470 6.62487 6.74954 6.79663 6.84245 7.06815 7.49199 7.58819 7.75603 7.78139 8.03532 8.17934 8.45205 9.11615 9.78356 10.46474 11.36527 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011062 B = 0.003901 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.513162 B = 7175.626186 C = 8432.697833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.583 5.583 10 C 0.178 3.822 11 C -0.142 4.142 12 C 0.128 3.872 13 N -0.668 5.668 14 C 0.597 3.403 15 O -0.530 6.530 16 C 0.003 3.997 17 N -0.328 5.328 18 O 0.132 5.868 19 C -0.037 4.037 20 C -0.201 4.201 21 C 0.143 3.857 22 O -0.376 6.376 23 C 0.061 3.939 24 C -0.068 4.068 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.117 4.117 28 C 0.161 3.839 29 H 0.025 0.975 30 H 0.252 0.748 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.408 0.592 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 -12.653 -14.556 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.306 5.306 10 C 0.054 3.946 11 C -0.181 4.181 12 C 0.040 3.960 13 N -0.318 5.318 14 C 0.380 3.620 15 O -0.406 6.406 16 C -0.156 4.156 17 N -0.030 5.030 18 O 0.060 5.940 19 C -0.102 4.102 20 C -0.206 4.206 21 C 0.066 3.934 22 O -0.294 6.294 23 C -0.016 4.016 24 C -0.106 4.106 25 C -0.150 4.150 26 C -0.155 4.155 27 C -0.156 4.156 28 C 0.050 3.950 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.244 0.756 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.504 -12.260 -13.692 18.385 hybrid contribution 0.563 1.015 -0.163 1.172 sum 0.060 -11.245 -13.855 17.844 Atomic orbital electron populations 1.69933 1.04931 1.25052 1.56493 1.24796 0.95618 0.97677 1.01910 0.86090 0.78785 0.83916 0.77237 1.20459 1.21789 1.21725 1.19048 0.90293 0.82228 1.44395 0.90237 1.43673 1.01720 0.99215 1.86038 1.22016 0.83192 0.88604 1.00772 1.22850 0.96531 0.99449 0.99284 1.21692 0.99517 0.93946 0.80823 1.45565 1.29593 1.46909 1.09690 1.16762 0.82362 0.81095 0.81771 1.90726 1.36300 1.35803 1.77792 1.23042 0.95241 0.99601 0.97721 1.74756 1.21321 1.15657 0.91303 1.84667 1.37225 1.52224 1.19863 1.23966 0.90614 0.96627 0.99005 1.21322 1.02058 1.05250 0.91981 1.20964 0.88738 0.95574 0.88089 1.88157 1.34712 1.91873 1.14638 1.22744 0.94183 0.95743 0.88926 1.21018 0.98144 1.02106 0.89324 1.22056 0.95096 0.95829 1.02052 1.22973 0.95537 0.95904 1.01089 1.21876 0.98056 0.94486 1.01182 1.20828 0.91413 0.87463 0.95254 0.95778 0.93733 0.91867 0.94537 0.90458 0.91415 0.75565 0.90533 0.86006 0.87015 0.92149 0.87759 0.87828 0.90819 0.91559 0.92292 0.91681 0.91737 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 10.55 55.49 0.59 -26.37 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.23 -6.28 10.29 -15.06 -0.15 -6.44 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.58 -14.42 3.16 -162.67 -0.51 -14.94 16 10 C 0.18 4.37 5.33 -0.75 0.00 4.37 16 11 C -0.14 -2.88 6.10 -25.44 -0.16 -3.03 16 12 C 0.13 2.37 0.42 -130.70 -0.06 2.31 16 13 N -0.67 -12.63 4.48 -47.35 -0.21 -12.84 16 14 C 0.60 11.13 7.24 -12.11 -0.09 11.04 16 15 O -0.53 -10.29 14.41 5.37 0.08 -10.22 16 16 C 0.00 0.04 7.18 -82.89 -0.60 -0.55 16 17 N -0.33 -5.59 11.90 33.26 0.40 -5.19 16 18 O 0.13 1.91 11.17 20.04 0.22 2.13 16 19 C -0.04 -0.45 7.50 -35.23 -0.26 -0.72 16 20 C -0.20 -2.87 6.15 -104.93 -0.65 -3.52 16 21 C 0.14 1.77 6.67 35.68 0.24 2.01 16 22 O -0.38 -4.17 10.76 -35.23 -0.38 -4.55 16 23 C 0.06 0.44 6.78 37.49 0.25 0.69 16 24 C -0.07 -0.50 6.56 -27.56 -0.18 -0.68 16 25 C -0.11 -1.73 6.24 -25.69 -0.16 -1.89 16 26 C -0.12 -1.63 6.95 -23.03 -0.16 -1.79 16 27 C -0.12 -1.98 6.46 -26.21 -0.17 -2.15 16 28 C 0.16 3.25 2.65 -68.71 -0.18 3.07 16 29 H 0.03 0.51 7.98 -51.93 -0.41 0.10 16 30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.06 1.76 7.05 -51.93 -0.37 1.39 16 32 H 0.04 0.97 7.98 -51.93 -0.41 0.56 16 33 H 0.08 1.61 6.27 -51.93 -0.33 1.29 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.41 8.06 7.33 -40.82 -0.30 7.76 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.12 1.64 8.00 -51.93 -0.42 1.22 16 38 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.04 7.73 -51.93 -0.40 0.64 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.12 7.17 -51.93 -0.37 0.75 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -32.06 372.34 -8.43 -40.50 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.78 Total: 6.22 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.42 Total: 2.54 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.25 Total: -59.33 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.08 Total: -12.64 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.06 -8.43 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992490085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.701 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds