Wall clock time and date at job start Wed Apr 1 2020 04:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00100 * 2 1 4 4 H 1.48493 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47164 * 300.00232 * 3 2 1 6 6 H 1.48501 * 109.46939 * 59.99948 * 3 2 1 7 7 C 1.38809 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99840 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.49295 * 127.10179 * 359.97114 * 9 7 2 11 11 C 1.56235 * 106.50818 * 171.38127 * 10 9 7 12 12 C 1.52136 * 100.81001 * 336.54948 * 11 10 9 13 13 N 1.46500 * 111.09628 * 286.02899 * 12 11 10 14 14 C 1.34770 * 119.99903 * 298.98630 * 13 12 11 15 15 O 1.21499 * 120.00238 * 359.97438 * 14 13 12 16 16 C 1.48328 * 119.99963 * 180.02562 * 14 13 12 17 17 N 1.31607 * 127.15777 * 359.97438 * 16 14 13 18 18 O 1.21563 * 111.54777 * 179.97438 * 17 16 14 19 19 C 1.32816 * 111.51807 * 359.95952 * 18 17 16 20 20 C 1.35710 * 106.70286 * 0.07854 * 19 18 17 21 21 C 1.50031 * 123.86154 * 179.80259 * 20 19 18 22 22 O 1.43612 * 107.82866 * 345.28048 * 21 20 19 23 23 C 1.43153 * 114.41005 * 50.03835 * 22 21 20 24 24 C 1.50665 * 130.82666 * 180.10467 * 19 18 17 25 25 C 1.51232 * 122.09768 * 151.84548 * 12 11 10 26 26 C 1.56590 * 104.17632 * 218.95046 * 25 12 11 27 27 C 1.56285 * 106.07029 * 6.57533 * 26 25 12 28 28 C 1.42706 * 127.10567 * 180.02562 * 9 7 2 29 29 H 1.08999 * 108.16363 * 103.44108 * 28 9 7 30 30 H 0.96999 * 119.99875 * 359.97438 * 1 2 3 31 31 H 1.08994 * 110.04932 * 52.11843 * 10 9 7 32 32 H 1.08999 * 110.05264 * 290.63770 * 10 9 7 33 33 H 1.09003 * 111.14744 * 218.66856 * 11 10 9 34 34 H 1.08994 * 111.15418 * 94.43816 * 11 10 9 35 35 H 0.97004 * 119.99764 * 118.98805 * 13 12 11 36 36 H 1.09006 * 109.79259 * 104.86871 * 21 20 19 37 37 H 1.08996 * 109.78937 * 225.69797 * 21 20 19 38 38 H 1.08997 * 109.48454 * 169.47473 * 23 22 21 39 39 H 1.09003 * 109.40330 * 49.68157 * 23 22 21 40 40 H 1.09002 * 109.82298 * 283.61999 * 24 19 18 41 41 H 1.08998 * 109.82544 * 44.48206 * 24 19 18 42 42 H 1.08997 * 110.41223 * 336.86421 * 25 12 11 43 43 H 1.08999 * 110.40577 * 99.30737 * 25 12 11 44 44 H 1.09003 * 109.73398 * 247.61071 * 26 25 12 45 45 H 1.08994 * 110.50444 * 125.96229 * 26 25 12 46 46 H 1.08998 * 110.96830 * 266.56570 * 27 26 25 47 47 H 1.08994 * 110.96674 * 142.79766 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1559 -2.5726 -0.0017 11 6 -0.4134 -4.0969 -0.2276 12 6 0.8805 -4.5060 -0.9154 13 7 0.9156 -4.0282 -2.2998 14 6 -0.0180 -4.4419 -3.1793 15 8 -0.8885 -5.2115 -2.8242 16 6 0.0179 -3.9586 -4.5812 17 7 0.8905 -3.1301 -5.1143 18 8 0.6530 -2.9266 -6.2890 19 6 -0.4178 -3.6003 -6.6933 20 6 -0.8735 -4.2907 -5.6175 21 6 -2.0799 -5.1822 -5.6460 22 8 -2.8133 -4.8913 -6.8460 23 6 -2.0205 -4.8894 -8.0380 24 6 -1.0878 -3.6684 -8.0411 25 6 1.4385 -5.9076 -0.8095 26 6 2.9854 -5.6964 -0.6883 27 6 3.2028 -4.1539 -0.5622 28 6 1.8807 -3.7027 -0.0018 29 1 1.7903 -4.1098 1.0053 30 1 -0.4850 0.8400 0.0004 31 1 -0.6045 -1.9942 -0.8093 32 1 -0.5714 -2.2616 0.9568 33 1 -1.2728 -4.2584 -0.8784 34 1 -0.5370 -4.6197 0.7208 35 1 1.6109 -3.4141 -2.5834 36 1 -1.7672 -6.2264 -5.6485 37 1 -2.7047 -4.9855 -4.7749 38 1 -2.6742 -4.8478 -8.9093 39 1 -1.4239 -5.8008 -8.0777 40 1 -1.6671 -2.7611 -8.2122 41 1 -0.3360 -3.7795 -8.8225 42 1 1.0606 -6.4006 0.0862 43 1 1.1854 -6.4856 -1.6982 44 1 3.4796 -6.0734 -1.5838 45 1 3.3719 -6.2038 0.1955 46 1 3.3865 -3.7048 -1.5383 47 1 4.0160 -3.9298 0.1280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992490085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:33 Heat of formation + Delta-G solvation = 9.686948 kcal Electronic energy + Delta-G solvation = -32316.433604 eV Core-core repulsion = 28082.173787 eV Total energy + Delta-G solvation = -4234.259817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.33347 -42.05013 -39.97738 -39.57715 -36.23643 -35.29779 -34.60227 -34.17396 -33.60712 -31.82725 -31.43728 -28.61837 -27.89525 -27.36776 -26.08404 -25.57736 -24.91450 -22.55914 -22.17582 -21.49532 -21.23553 -20.20169 -19.16476 -18.98272 -18.43632 -18.03159 -17.46927 -17.12498 -16.60028 -16.48320 -16.31994 -15.91151 -15.87192 -15.75586 -15.54000 -15.12461 -14.63377 -14.53665 -14.20941 -14.11469 -13.80364 -13.66752 -13.10219 -13.06125 -12.91463 -12.84499 -12.72603 -12.65899 -12.27046 -12.17039 -12.08483 -12.03542 -11.85130 -11.64026 -11.53873 -11.42410 -11.39237 -10.92363 -10.87361 -10.77549 -10.29563 -10.09257 -8.92699 -7.89314 -5.25059 -0.06118 0.43880 1.42046 1.42606 1.52646 1.68676 1.88291 2.05183 2.45326 2.61513 2.86669 3.01331 3.30688 3.40955 3.53601 3.67704 3.73240 3.80617 3.98604 4.03673 4.14024 4.20049 4.25619 4.33391 4.35015 4.37001 4.44852 4.50681 4.57111 4.67135 4.73360 4.80458 4.87846 4.89245 4.90332 4.99254 5.01740 5.05291 5.16694 5.21462 5.43004 5.49273 5.51281 5.57637 5.68079 6.00838 6.12755 6.32233 6.82375 6.98293 7.00298 7.71699 8.43580 9.22764 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011062 B = 0.003901 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.513162 B = 7175.626186 C = 8432.697833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.064 4.064 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.298 1.298 6 H -0.294 1.294 7 C -0.232 4.232 8 H 0.088 0.912 9 N -0.598 5.598 10 C 0.190 3.810 11 C -0.130 4.130 12 C 0.135 3.865 13 N -0.673 5.673 14 C 0.595 3.405 15 O -0.543 6.543 16 C -0.024 4.024 17 N -0.356 5.356 18 O 0.138 5.862 19 C -0.020 4.020 20 C -0.220 4.220 21 C 0.150 3.850 22 O -0.390 6.390 23 C 0.053 3.947 24 C -0.065 4.065 25 C -0.106 4.106 26 C -0.102 4.102 27 C -0.114 4.114 28 C 0.146 3.854 29 H 0.027 0.973 30 H 0.244 0.756 31 H 0.020 0.980 32 H 0.004 0.996 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.402 0.598 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.147 0.853 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.141 0.859 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -14.398 -16.561 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.257 4.257 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.221 1.221 7 C -0.360 4.360 8 H 0.106 0.894 9 N -0.321 5.321 10 C 0.065 3.935 11 C -0.169 4.169 12 C 0.048 3.952 13 N -0.322 5.322 14 C 0.379 3.621 15 O -0.420 6.420 16 C -0.181 4.181 17 N -0.058 5.058 18 O 0.065 5.935 19 C -0.085 4.085 20 C -0.225 4.225 21 C 0.073 3.927 22 O -0.309 6.309 23 C -0.023 4.023 24 C -0.103 4.103 25 C -0.145 4.145 26 C -0.140 4.140 27 C -0.152 4.152 28 C 0.037 3.963 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.022 0.978 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.238 0.762 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.165 0.835 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.159 0.841 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.932 -14.050 -15.689 21.081 hybrid contribution 0.085 1.561 0.367 1.605 sum 1.017 -12.489 -15.322 19.793 Atomic orbital electron populations 1.70159 1.06447 1.25042 1.58420 1.25598 0.96382 1.00950 1.02751 0.85083 0.78498 0.79823 0.76414 1.18564 1.22521 1.22078 1.19432 0.90863 0.83256 1.42496 0.89422 1.43798 1.01882 1.00506 1.85953 1.21672 0.83388 0.91071 0.97325 1.22697 0.97409 0.96333 1.00458 1.21732 0.97451 0.95726 0.80338 1.45630 1.29658 1.46975 1.09905 1.16983 0.81876 0.80800 0.82480 1.90697 1.36557 1.36443 1.78350 1.23009 0.96781 1.00794 0.97546 1.74728 1.22239 1.16403 0.92476 1.84621 1.37928 1.52085 1.18871 1.24887 0.88954 0.94179 1.00504 1.21611 1.02615 1.06489 0.91823 1.20814 0.87670 0.95754 0.88476 1.88140 1.35532 1.91951 1.15240 1.23147 0.94798 0.96112 0.88257 1.21398 0.98761 1.02878 0.87255 1.22070 0.96116 0.93373 1.02912 1.22912 0.94290 0.93523 1.03246 1.21899 0.96250 0.96565 1.00531 1.21093 0.94099 0.85232 0.95866 0.95524 0.94642 0.96149 0.97772 0.91378 0.89310 0.76248 0.89415 0.88081 0.83547 0.90938 0.86369 0.84109 0.89110 0.91522 0.90593 0.89023 0.92680 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.76 10.55 21.65 0.23 -58.54 16 2 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 3 Si 0.97 46.56 29.55 68.60 2.03 48.59 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 6 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.23 -12.81 10.29 84.03 0.86 -11.95 16 8 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 9 N -0.60 -30.39 3.16 -668.58 -2.11 -32.50 16 10 C 0.19 9.85 5.33 86.96 0.46 10.31 16 11 C -0.13 -5.38 6.10 31.43 0.19 -5.19 16 12 C 0.13 4.96 0.42 4.33 0.00 4.96 16 13 N -0.67 -25.98 4.48 -422.02 -1.89 -27.86 16 14 C 0.59 22.81 7.24 86.93 0.63 23.44 16 15 O -0.54 -21.61 14.41 -3.71 -0.05 -21.66 16 16 C -0.02 -0.86 7.18 42.46 0.30 -0.55 16 17 N -0.36 -12.37 11.90 -48.97 -0.58 -12.96 16 18 O 0.14 3.91 11.17 81.70 0.91 4.82 16 19 C -0.02 -0.46 7.50 25.09 0.19 -0.27 16 20 C -0.22 -6.24 6.15 -20.07 -0.12 -6.36 16 21 C 0.15 3.68 6.67 71.03 0.47 4.15 16 22 O -0.39 -8.01 10.76 -148.98 -1.60 -9.62 16 23 C 0.05 0.57 6.78 72.20 0.49 1.06 16 24 C -0.07 -0.73 6.56 30.05 0.20 -0.53 16 25 C -0.11 -3.04 6.24 31.27 0.20 -2.84 16 26 C -0.10 -2.51 6.95 32.99 0.23 -2.28 16 27 C -0.11 -3.65 6.46 30.93 0.20 -3.45 16 28 C 0.15 5.84 2.65 46.47 0.12 5.96 16 29 H 0.03 1.09 7.98 -2.39 -0.02 1.07 16 30 H 0.24 14.80 8.31 -92.71 -0.77 14.02 16 31 H 0.02 1.21 7.05 -2.39 -0.02 1.19 16 32 H 0.00 0.23 7.98 -2.39 -0.02 0.21 16 33 H 0.07 2.95 6.27 -2.39 -0.01 2.93 16 34 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.40 16.39 7.33 -92.71 -0.68 15.71 16 36 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.10 2.85 8.00 -2.39 -0.02 2.83 16 38 H 0.15 0.61 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.64 8.10 -2.39 -0.02 0.62 16 40 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.07 1.95 7.73 -2.39 -0.02 1.93 16 44 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.05 1.86 7.17 -2.39 -0.02 1.85 16 47 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -74.27 372.34 2.15 -72.12 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.33 Total: 24.36 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 4.90 Total: 13.26 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -4.36 Total: -131.86 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.74 Total: -26.46 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -74.27 2.15 -72.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992490085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.804 kcal (2) G-P(sol) polarization free energy of solvation -74.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds