Wall clock time and date at job start Wed Apr 1 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99915 * 2 1 4 4 H 1.48499 * 109.47236 * 269.99441 * 3 2 1 5 5 H 1.48500 * 109.47378 * 29.99424 * 3 2 1 6 6 H 1.48502 * 109.47282 * 149.99479 * 3 2 1 7 7 C 1.38809 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99961 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00585 * 180.02562 * 7 2 1 10 10 C 1.46491 * 120.00300 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.01253 * 33.92029 * 10 9 7 12 12 C 1.52821 * 109.03092 * 275.00309 * 10 9 7 13 13 C 1.53337 * 108.13059 * 298.38912 * 12 10 9 14 14 C 1.51401 * 108.64995 * 296.28437 * 13 12 10 15 15 C 1.53006 * 111.74175 * 61.64050 * 14 13 12 16 16 H 1.09000 * 112.07518 * 74.11650 * 15 14 13 17 17 C 1.55350 * 106.98092 * 197.70218 * 15 14 13 18 18 N 1.47168 * 106.96211 * 91.81942 * 17 15 14 19 19 C 1.34780 * 125.64599 * 180.94342 * 18 17 15 20 20 O 1.21676 * 119.99896 * 179.97438 * 19 18 17 21 21 C 1.46770 * 120.00336 * 359.97366 * 19 18 17 22 22 C 1.36053 * 125.65904 * 179.71426 * 21 19 18 23 23 C 1.41730 * 106.63071 * 179.88839 * 22 21 19 24 24 C 1.47487 * 126.77607 * 180.12283 * 23 22 21 25 25 N 1.34780 * 119.99698 * 180.27450 * 24 23 22 26 26 O 1.21591 * 120.00102 * 0.27602 * 24 23 22 27 27 C 1.37814 * 106.44793 * 0.37177 * 23 22 21 28 28 O 1.33495 * 108.34419 * 359.77340 * 27 23 22 29 29 C 1.47813 * 108.70584 * 0.96262 * 18 17 15 30 30 C 1.50742 * 108.96582 * 152.80055 * 10 9 7 31 31 H 1.09001 * 109.26745 * 306.78120 * 30 10 9 32 32 H 0.97000 * 119.99722 * 0.02562 * 1 2 3 33 33 H 0.97003 * 119.99607 * 0.02562 * 9 7 2 34 34 H 1.09002 * 109.73781 * 58.06139 * 12 10 9 35 35 H 1.09005 * 109.73923 * 178.71614 * 12 10 9 36 36 H 1.08992 * 109.67772 * 55.62450 * 13 12 10 37 37 H 1.08997 * 109.67336 * 176.16809 * 13 12 10 38 38 H 1.09005 * 108.18554 * 301.45014 * 14 13 12 39 39 H 1.08997 * 109.44028 * 182.67469 * 14 13 12 40 40 H 1.09002 * 109.96111 * 211.20179 * 17 15 14 41 41 H 1.09002 * 109.96354 * 332.40628 * 17 15 14 42 42 H 1.07999 * 126.68711 * 0.03149 * 22 21 19 43 43 H 0.96996 * 120.00277 * 0.02562 * 25 24 23 44 44 H 0.97002 * 119.99676 * 179.97438 * 25 24 23 45 45 H 1.08002 * 125.83000 * 179.80104 * 27 23 22 46 46 H 1.09000 * 110.51154 * 264.70820 * 29 18 17 47 47 H 1.08995 * 110.51676 * 141.99079 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0022 11 1 3.5493 -3.2063 -0.5726 12 6 4.2516 -2.9644 1.4418 13 6 5.0565 -1.9223 2.2276 14 6 6.4492 -1.8419 1.6393 15 6 6.4217 -1.3924 0.1770 16 1 6.2049 -0.3287 0.0794 17 6 7.7946 -1.7750 -0.4412 18 7 7.6429 -3.1167 -1.0267 19 6 8.6131 -3.8176 -1.6462 20 8 8.3735 -4.9233 -2.0940 21 6 9.9587 -3.2472 -1.7808 22 6 11.0210 -3.8532 -2.3770 23 6 12.1087 -2.9492 -2.2834 24 6 13.4775 -3.1592 -2.7908 25 7 14.4129 -2.2038 -2.6214 26 8 13.7620 -4.1942 -3.3620 27 6 11.6362 -1.8377 -1.6196 28 8 10.3488 -2.0377 -1.3287 29 6 6.2501 -3.5680 -0.8232 30 6 5.4554 -2.2615 -0.6490 31 1 5.3129 -1.8069 -1.6294 32 1 -0.4850 0.8401 -0.0004 33 1 3.8647 -0.3621 0.0014 34 1 3.2642 -3.0802 1.8885 35 1 4.7757 -3.9201 1.4541 36 1 4.5750 -0.9480 2.1450 37 1 5.1133 -2.2165 3.2756 38 1 6.9022 -2.8315 1.7009 39 1 7.0477 -1.1388 2.2185 40 1 8.0659 -1.0589 -1.2169 41 1 8.5604 -1.7912 0.3343 42 1 11.0327 -4.8313 -2.8346 43 1 14.1860 -1.3783 -2.1654 44 1 15.3133 -2.3420 -2.9548 45 1 12.2095 -0.9552 -1.3767 46 1 6.1751 -4.1830 0.0736 47 1 5.8953 -4.1174 -1.6951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992803865.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:33 Heat of formation + Delta-G solvation = -41.892226 kcal Electronic energy + Delta-G solvation = -30822.111160 eV Core-core repulsion = 26585.614702 eV Total energy + Delta-G solvation = -4236.496458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.29095 -40.68061 -39.59309 -38.76929 -35.88698 -34.38186 -33.63701 -33.37669 -31.71978 -31.26210 -30.19355 -29.69563 -26.88915 -25.29140 -24.50741 -23.38695 -22.20917 -21.98343 -21.23538 -21.15166 -19.92372 -18.70172 -18.19384 -17.69119 -17.25778 -17.04893 -16.93653 -16.40190 -16.08875 -15.69513 -15.05845 -14.83165 -14.61364 -14.29977 -14.22767 -14.08878 -13.76724 -13.64900 -13.33085 -13.16157 -13.02402 -12.87291 -12.53722 -12.14268 -11.83045 -11.57138 -11.34578 -11.22540 -10.96683 -10.81142 -10.70053 -10.53317 -10.46603 -10.31182 -10.26107 -10.16090 -9.89944 -9.68419 -9.58658 -9.31191 -8.92654 -8.77221 -7.30707 -5.79835 -3.15384 0.50924 1.13153 2.08497 2.67817 2.74098 2.96729 3.01260 3.31447 3.34256 3.41326 3.93607 4.05286 4.32594 4.41085 4.54763 4.61269 4.76363 4.94819 5.02653 5.08914 5.18388 5.25761 5.35249 5.40985 5.46244 5.54098 5.62574 5.65416 5.69968 5.71429 5.81326 5.86228 5.95144 5.98818 6.07744 6.22160 6.22420 6.23976 6.28347 6.32272 6.65070 6.70167 6.75553 6.84669 6.94528 7.21536 7.72623 7.77839 7.96413 8.39004 9.17267 9.89456 10.09185 11.38571 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.002371 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.050087 B =11807.590809 C =12254.598874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.194 3.806 11 H 0.059 0.941 12 C -0.135 4.135 13 C -0.114 4.114 14 C -0.109 4.109 15 C -0.089 4.089 16 H 0.097 0.903 17 C 0.102 3.898 18 N -0.605 5.605 19 C 0.613 3.387 20 O -0.517 6.517 21 C -0.066 4.066 22 C -0.071 4.071 23 C -0.243 4.243 24 C 0.594 3.406 25 N -0.851 5.851 26 O -0.533 6.533 27 C 0.041 3.959 28 O -0.144 6.144 29 C 0.116 3.884 30 C -0.101 4.101 31 H 0.082 0.918 32 H 0.259 0.741 33 H 0.360 0.640 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.171 0.829 43 H 0.399 0.601 44 H 0.408 0.592 45 H 0.219 0.781 46 H 0.078 0.922 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.756 -0.364 0.378 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.386 5.386 10 C 0.085 3.915 11 H 0.077 0.923 12 C -0.175 4.175 13 C -0.152 4.152 14 C -0.146 4.146 15 C -0.107 4.107 16 H 0.115 0.885 17 C -0.021 4.021 18 N -0.337 5.337 19 C 0.400 3.600 20 O -0.395 6.395 21 C -0.117 4.117 22 C -0.092 4.092 23 C -0.248 4.248 24 C 0.379 3.621 25 N -0.415 5.415 26 O -0.410 6.410 27 C -0.033 4.033 28 O -0.037 6.037 29 C -0.006 4.006 30 C -0.121 4.121 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.193 0.807 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.189 0.811 43 H 0.228 0.772 44 H 0.239 0.761 45 H 0.235 0.765 46 H 0.097 0.903 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 27.187 -1.608 -0.100 27.235 hybrid contribution 1.074 1.819 0.090 2.114 sum 28.261 0.211 -0.010 28.262 Atomic orbital electron populations 1.69694 1.05095 1.25753 1.57593 1.24658 0.95181 0.97096 1.02201 0.86596 0.79204 0.85263 0.77694 1.21205 1.21862 1.20320 1.19066 0.80515 0.94664 1.42749 0.89153 1.42747 1.03853 1.01734 1.90290 1.19457 0.88858 0.89786 0.93439 0.92297 1.22185 1.00215 0.96651 0.98441 1.21185 0.94624 1.01369 0.98005 1.21309 0.98365 1.00747 0.94220 1.22208 0.92464 1.00620 0.95445 0.88503 1.22525 0.98793 0.83052 0.97690 1.48470 1.11250 1.18489 1.55495 1.16102 0.80891 0.84235 0.78750 1.90915 1.80251 1.18734 1.49621 1.22008 0.96543 0.85567 1.07617 1.21843 0.89093 1.00757 0.97546 1.20617 0.96233 0.97383 1.10556 1.17227 0.83519 0.83157 0.78163 1.43655 1.14406 1.20626 1.62857 1.90866 1.81096 1.26909 1.42112 1.25062 0.82350 0.99287 0.96584 1.84066 1.25374 1.33132 1.61155 1.22312 0.78615 0.97302 1.02392 1.21848 0.95407 0.94440 1.00360 0.89991 0.93089 0.80704 0.91213 0.93321 0.90921 0.92908 0.92470 0.92434 0.91192 0.90827 0.81108 0.77242 0.76056 0.76494 0.90341 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.97 55.49 0.78 -27.76 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 21.10 27.74 -169.99 -4.71 16.39 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.08 6.52 56.52 0.37 -5.71 16 7 C -0.24 -6.36 10.39 -15.06 -0.16 -6.52 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 9 N -0.74 -15.90 3.98 -54.62 -0.22 -16.12 16 10 C 0.19 3.33 2.52 -69.16 -0.17 3.15 16 11 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 12 C -0.13 -2.11 5.47 -26.65 -0.15 -2.25 16 13 C -0.11 -1.64 5.81 -27.36 -0.16 -1.80 16 14 C -0.11 -1.28 4.59 -27.54 -0.13 -1.40 16 15 C -0.09 -1.06 3.24 -88.85 -0.29 -1.35 16 16 H 0.10 1.19 7.98 -51.93 -0.41 0.78 16 17 C 0.10 1.06 4.86 -2.43 -0.01 1.05 16 18 N -0.60 -7.49 3.34 -171.57 -0.57 -8.06 16 19 C 0.61 8.30 7.82 -12.81 -0.10 8.20 16 20 O -0.52 -8.57 17.13 5.21 0.09 -8.49 16 21 C -0.07 -0.73 6.92 -36.92 -0.26 -0.99 16 22 C -0.07 -0.78 10.41 -39.03 -0.41 -1.19 16 23 C -0.24 -2.03 6.16 -104.95 -0.65 -2.68 16 24 C 0.59 5.16 8.09 -12.49 -0.10 5.05 16 25 N -0.85 -3.09 8.86 30.45 0.27 -2.82 16 26 O -0.53 -7.12 17.77 5.29 0.09 -7.03 16 27 C 0.04 0.22 11.64 30.58 0.36 0.57 16 28 O -0.14 -1.20 8.18 6.17 0.05 -1.15 16 29 C 0.12 1.50 5.87 -2.85 -0.02 1.49 16 30 C -0.10 -1.41 2.31 -90.76 -0.21 -1.62 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.36 7.57 5.12 -40.82 -0.21 7.36 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.66 6.80 -51.93 -0.35 0.31 16 36 H 0.07 1.23 7.36 -51.93 -0.38 0.85 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.65 7.21 -51.93 -0.37 0.28 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.68 7.78 -51.93 -0.40 0.27 16 41 H 0.07 0.68 7.30 -51.93 -0.38 0.30 16 42 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 43 H 0.40 0.04 7.78 -40.82 -0.32 -0.28 16 44 H 0.41 1.09 8.93 -40.82 -0.36 0.72 16 45 H 0.22 -0.04 7.46 -52.49 -0.39 -0.43 16 46 H 0.08 0.99 6.17 -51.93 -0.32 0.67 16 47 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -35.76 376.32 -7.55 -43.30 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.45 Total: 6.32 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.54 Total: -0.26 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.25 Total: -54.76 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.23 Total: -16.66 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.76 -7.55 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992803865.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.411 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds