Wall clock time and date at job start Wed Apr 1 2020 05:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99915 * 2 1 4 4 H 1.48499 * 109.47236 * 269.99441 * 3 2 1 5 5 H 1.48500 * 109.47378 * 29.99424 * 3 2 1 6 6 H 1.48502 * 109.47282 * 149.99479 * 3 2 1 7 7 C 1.38809 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99961 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00585 * 180.02562 * 7 2 1 10 10 C 1.46491 * 120.00300 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.01253 * 33.92029 * 10 9 7 12 12 C 1.52821 * 109.03092 * 275.00309 * 10 9 7 13 13 C 1.53337 * 108.13059 * 298.38912 * 12 10 9 14 14 C 1.51401 * 108.64995 * 296.28437 * 13 12 10 15 15 C 1.53006 * 111.74175 * 61.64050 * 14 13 12 16 16 H 1.09000 * 112.07518 * 74.11650 * 15 14 13 17 17 C 1.55350 * 106.98092 * 197.70218 * 15 14 13 18 18 N 1.47168 * 106.96211 * 91.81942 * 17 15 14 19 19 C 1.34780 * 125.64599 * 180.94342 * 18 17 15 20 20 O 1.21676 * 119.99896 * 179.97438 * 19 18 17 21 21 C 1.46770 * 120.00336 * 359.97366 * 19 18 17 22 22 C 1.36053 * 125.65904 * 179.71426 * 21 19 18 23 23 C 1.41730 * 106.63071 * 179.88839 * 22 21 19 24 24 C 1.47487 * 126.77607 * 180.12283 * 23 22 21 25 25 N 1.34780 * 119.99698 * 180.27450 * 24 23 22 26 26 O 1.21591 * 120.00102 * 0.27602 * 24 23 22 27 27 C 1.37814 * 106.44793 * 0.37177 * 23 22 21 28 28 O 1.33495 * 108.34419 * 359.77340 * 27 23 22 29 29 C 1.47813 * 108.70584 * 0.96262 * 18 17 15 30 30 C 1.50742 * 108.96582 * 152.80055 * 10 9 7 31 31 H 1.09001 * 109.26745 * 306.78120 * 30 10 9 32 32 H 0.97000 * 119.99722 * 0.02562 * 1 2 3 33 33 H 0.97003 * 119.99607 * 0.02562 * 9 7 2 34 34 H 1.09002 * 109.73781 * 58.06139 * 12 10 9 35 35 H 1.09005 * 109.73923 * 178.71614 * 12 10 9 36 36 H 1.08992 * 109.67772 * 55.62450 * 13 12 10 37 37 H 1.08997 * 109.67336 * 176.16809 * 13 12 10 38 38 H 1.09005 * 108.18554 * 301.45014 * 14 13 12 39 39 H 1.08997 * 109.44028 * 182.67469 * 14 13 12 40 40 H 1.09002 * 109.96111 * 211.20179 * 17 15 14 41 41 H 1.09002 * 109.96354 * 332.40628 * 17 15 14 42 42 H 1.07999 * 126.68711 * 0.03149 * 22 21 19 43 43 H 0.96996 * 120.00277 * 0.02562 * 25 24 23 44 44 H 0.97002 * 119.99676 * 179.97438 * 25 24 23 45 45 H 1.08002 * 125.83000 * 179.80104 * 27 23 22 46 46 H 1.09000 * 110.51154 * 264.70820 * 29 18 17 47 47 H 1.08995 * 110.51676 * 141.99079 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0022 11 1 3.5493 -3.2063 -0.5726 12 6 4.2516 -2.9644 1.4418 13 6 5.0565 -1.9223 2.2276 14 6 6.4492 -1.8419 1.6393 15 6 6.4217 -1.3924 0.1770 16 1 6.2049 -0.3287 0.0794 17 6 7.7946 -1.7750 -0.4412 18 7 7.6429 -3.1167 -1.0267 19 6 8.6131 -3.8176 -1.6462 20 8 8.3735 -4.9233 -2.0940 21 6 9.9587 -3.2472 -1.7808 22 6 11.0210 -3.8532 -2.3770 23 6 12.1087 -2.9492 -2.2834 24 6 13.4775 -3.1592 -2.7908 25 7 14.4129 -2.2038 -2.6214 26 8 13.7620 -4.1942 -3.3620 27 6 11.6362 -1.8377 -1.6196 28 8 10.3488 -2.0377 -1.3287 29 6 6.2501 -3.5680 -0.8232 30 6 5.4554 -2.2615 -0.6490 31 1 5.3129 -1.8069 -1.6294 32 1 -0.4850 0.8401 -0.0004 33 1 3.8647 -0.3621 0.0014 34 1 3.2642 -3.0802 1.8885 35 1 4.7757 -3.9201 1.4541 36 1 4.5750 -0.9480 2.1450 37 1 5.1133 -2.2165 3.2756 38 1 6.9022 -2.8315 1.7009 39 1 7.0477 -1.1388 2.2185 40 1 8.0659 -1.0589 -1.2169 41 1 8.5604 -1.7912 0.3343 42 1 11.0327 -4.8313 -2.8346 43 1 14.1860 -1.3783 -2.1654 44 1 15.3133 -2.3420 -2.9548 45 1 12.2095 -0.9552 -1.3767 46 1 6.1751 -4.1830 0.0736 47 1 5.8953 -4.1174 -1.6951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992803865.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:32 Heat of formation + Delta-G solvation = -70.119236 kcal Electronic energy + Delta-G solvation = -30823.335175 eV Core-core repulsion = 26585.614702 eV Total energy + Delta-G solvation = -4237.720473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.94657 -41.74159 -40.25424 -39.87298 -37.20133 -35.19831 -34.95511 -34.04378 -33.36782 -32.32515 -31.41669 -30.75695 -28.08898 -26.42229 -25.09022 -24.93203 -23.38829 -22.98105 -22.38589 -21.92003 -20.61424 -19.92394 -19.53483 -18.99697 -17.96518 -17.76276 -17.64992 -17.13838 -17.10275 -16.58321 -16.44181 -16.05459 -15.67853 -15.58127 -15.26501 -15.05489 -14.90970 -14.70128 -14.50143 -14.23114 -14.17054 -13.92434 -13.76572 -13.55853 -13.02379 -12.87723 -12.72669 -12.56988 -12.41486 -12.11412 -12.01955 -11.79410 -11.60688 -11.40807 -11.30501 -11.25756 -11.19506 -10.90862 -10.73968 -10.69747 -10.05121 -9.67583 -9.25234 -7.96782 -5.29362 -0.13469 0.42122 1.35508 1.39424 1.44726 1.51940 1.86680 1.88857 2.26828 2.49564 2.53240 3.23684 3.34461 3.41086 3.43828 3.48687 3.74089 3.84812 3.98373 4.15999 4.23305 4.26501 4.32866 4.39438 4.42621 4.48396 4.59152 4.63365 4.70284 4.74583 4.78641 4.85543 4.89142 4.93097 5.05108 5.08942 5.15561 5.25951 5.39857 5.46430 5.57287 5.61161 5.66617 5.84126 5.84785 6.26140 6.27533 6.41926 6.79756 7.14101 7.28082 7.89481 8.10463 9.25110 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.002371 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.050087 B =11807.590809 C =12254.598874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.070 4.070 3 Si 0.953 3.047 4 H -0.282 1.282 5 H -0.302 1.302 6 H -0.241 1.241 7 C -0.220 4.220 8 H 0.052 0.948 9 N -0.741 5.741 10 C 0.192 3.808 11 H 0.036 0.964 12 C -0.131 4.131 13 C -0.111 4.111 14 C -0.102 4.102 15 C -0.087 4.087 16 H 0.103 0.897 17 C 0.108 3.892 18 N -0.603 5.603 19 C 0.610 3.390 20 O -0.563 6.563 21 C -0.084 4.084 22 C -0.082 4.082 23 C -0.271 4.271 24 C 0.592 3.408 25 N -0.823 5.823 26 O -0.595 6.595 27 C 0.096 3.904 28 O -0.140 6.140 29 C 0.120 3.880 30 C -0.094 4.094 31 H 0.071 0.929 32 H 0.255 0.745 33 H 0.367 0.633 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.148 0.852 43 H 0.421 0.579 44 H 0.416 0.584 45 H 0.284 0.716 46 H 0.084 0.916 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.311 2.770 1.737 32.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.260 4.260 3 Si 0.780 3.220 4 H -0.208 1.208 5 H -0.229 1.229 6 H -0.165 1.165 7 C -0.351 4.351 8 H 0.070 0.930 9 N -0.385 5.385 10 C 0.083 3.917 11 H 0.054 0.946 12 C -0.170 4.170 13 C -0.149 4.149 14 C -0.140 4.140 15 C -0.105 4.105 16 H 0.121 0.879 17 C -0.014 4.014 18 N -0.334 5.334 19 C 0.399 3.601 20 O -0.445 6.445 21 C -0.135 4.135 22 C -0.104 4.104 23 C -0.275 4.275 24 C 0.378 3.622 25 N -0.387 5.387 26 O -0.476 6.476 27 C 0.023 3.977 28 O -0.032 6.032 29 C -0.002 4.002 30 C -0.114 4.114 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.201 0.799 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.166 0.834 43 H 0.253 0.747 44 H 0.248 0.752 45 H 0.299 0.701 46 H 0.102 0.898 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 31.820 1.569 1.298 31.885 hybrid contribution -0.308 0.775 -0.332 0.898 sum 31.511 2.344 0.966 31.613 Atomic orbital electron populations 1.69900 1.07332 1.26454 1.60286 1.25508 0.96054 1.01333 1.03139 0.85434 0.79067 0.79512 0.77943 1.20797 1.22939 1.16459 1.18983 0.82765 0.93101 1.40293 0.93017 1.42652 1.02012 1.03633 1.90185 1.19590 0.90073 0.87483 0.94529 0.94596 1.22075 0.99311 0.98602 0.97051 1.21150 0.95820 0.99118 0.98797 1.21279 0.96683 1.02067 0.93933 1.22237 0.92510 1.00360 0.95431 0.87930 1.22623 0.98184 0.81919 0.98637 1.48473 1.10464 1.19253 1.55233 1.16376 0.81843 0.83807 0.78053 1.90883 1.81293 1.20775 1.51522 1.21295 0.95282 0.87076 1.09870 1.21853 0.90640 1.00588 0.97320 1.20604 0.95724 0.98337 1.12846 1.17355 0.84207 0.83064 0.77556 1.43416 1.13790 1.20188 1.61343 1.90843 1.82052 1.29579 1.45154 1.26218 0.80773 0.99093 0.91618 1.84065 1.26706 1.31516 1.60952 1.22144 0.79324 0.96643 1.02095 1.21598 0.94122 0.95681 0.99969 0.91028 0.93625 0.79937 0.94466 0.90976 0.93354 0.91535 0.91670 0.89660 0.89683 0.88352 0.83432 0.74714 0.75183 0.70109 0.89776 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.84 13.97 21.65 0.30 -62.54 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.95 43.46 27.74 68.60 1.90 45.36 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.24 -9.40 6.52 99.48 0.65 -8.75 16 7 C -0.22 -12.06 10.39 84.03 0.87 -11.19 16 8 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 9 N -0.74 -31.65 3.98 -326.73 -1.30 -32.95 16 10 C 0.19 6.59 2.52 44.20 0.11 6.70 16 11 H 0.04 1.38 8.06 -2.39 -0.02 1.36 16 12 C -0.13 -4.03 5.47 30.65 0.17 -3.86 16 13 C -0.11 -2.91 5.81 30.18 0.18 -2.74 16 14 C -0.10 -1.96 4.59 30.07 0.14 -1.82 16 15 C -0.09 -1.76 3.24 -9.65 -0.03 -1.79 16 16 H 0.10 2.05 7.98 -2.39 -0.02 2.03 16 17 C 0.11 1.77 4.86 87.06 0.42 2.20 16 18 N -0.60 -13.74 3.34 -814.95 -2.72 -16.46 16 19 C 0.61 16.09 7.82 86.47 0.68 16.77 16 20 O -0.56 -19.33 17.13 -4.27 -0.07 -19.41 16 21 C -0.08 -1.71 6.92 23.99 0.17 -1.55 16 22 C -0.08 -1.77 10.41 22.62 0.24 -1.54 16 23 C -0.27 -3.78 6.16 -20.08 -0.12 -3.90 16 24 C 0.59 9.11 8.09 86.68 0.70 9.82 16 25 N -0.82 -2.87 8.86 -175.85 -1.56 -4.43 16 26 O -0.59 -16.04 17.77 -4.00 -0.07 -16.12 16 27 C 0.10 0.47 11.64 67.72 0.79 1.25 16 28 O -0.14 -1.65 8.18 -0.82 -0.01 -1.65 16 29 C 0.12 3.03 5.87 86.43 0.51 3.54 16 30 C -0.09 -2.50 2.31 -10.89 -0.03 -2.52 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.26 15.52 8.31 -92.71 -0.77 14.74 16 33 H 0.37 14.72 5.12 -92.71 -0.48 14.24 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.88 6.80 -2.38 -0.02 1.87 16 36 H 0.05 1.51 7.36 -2.39 -0.02 1.50 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.19 7.21 -2.38 -0.02 1.18 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.21 7.78 -2.39 -0.02 1.19 16 41 H 0.10 1.22 7.30 -2.39 -0.02 1.20 16 42 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 43 H 0.42 -2.30 7.78 -92.71 -0.72 -3.02 16 44 H 0.42 0.90 8.93 -92.71 -0.83 0.07 16 45 H 0.28 -2.62 7.46 -2.91 -0.02 -2.64 16 46 H 0.08 2.02 6.17 -2.39 -0.01 2.01 16 47 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 Total: -1.00 -86.51 376.32 0.69 -85.82 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -1.04 Total: 16.54 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 5.25 Total: 5.83 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -5.28 Total: -116.38 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -0.15 Total: -37.18 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.90 Total: 45.36 kcal Total: -86.51 0.69 -85.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992803865.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.703 kcal (2) G-P(sol) polarization free energy of solvation -86.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds