Wall clock time and date at job start Wed Apr 1 2020 04:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00155 * 2 1 4 4 H 1.48505 * 109.46794 * 239.99491 * 3 2 1 5 5 H 1.48496 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47010 * 119.99677 * 3 2 1 7 7 C 1.38809 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99912 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00011 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49934 * 324.93153 * 10 9 7 12 12 C 1.53042 * 109.52370 * 204.84979 * 10 9 7 13 13 C 1.53039 * 109.54031 * 178.66886 * 12 10 9 14 14 C 1.52760 * 109.38459 * 61.24177 * 13 12 10 15 15 N 1.46931 * 109.00543 * 305.58756 * 14 13 12 16 16 C 1.34777 * 120.63086 * 233.58109 * 15 14 13 17 17 O 1.21283 * 119.99750 * 179.72075 * 16 15 14 18 18 C 1.50702 * 119.99928 * 0.02562 * 16 15 14 19 19 O 1.42899 * 109.46876 * 179.72354 * 18 16 15 20 20 C 1.35910 * 116.99557 * 179.97438 * 19 18 16 21 21 C 1.38848 * 119.98746 * 359.72195 * 20 19 18 22 22 C 1.38249 * 120.23715 * 179.72183 * 21 20 19 23 23 C 1.38006 * 120.20835 * 0.55739 * 22 21 20 24 24 C 1.39561 * 119.96122 * 359.72175 * 23 22 21 25 25 C 1.47863 * 120.11498 * 180.02562 * 24 23 22 26 26 N 1.34778 * 119.99982 * 359.97160 * 25 24 23 27 27 O 1.21554 * 120.00091 * 179.97438 * 25 24 23 28 28 C 1.38451 * 119.98274 * 179.97438 * 20 19 18 29 29 C 1.46925 * 118.73924 * 53.31068 * 15 14 13 30 30 H 0.97001 * 119.99362 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00045 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46134 * 298.69188 * 12 10 9 33 33 H 1.09001 * 109.46045 * 58.65703 * 12 10 9 34 34 H 1.09004 * 109.49958 * 181.31755 * 13 12 10 35 35 H 1.09000 * 109.49401 * 301.38285 * 13 12 10 36 36 H 1.08997 * 109.51122 * 185.71191 * 14 13 12 37 37 H 1.09000 * 109.43557 * 65.42042 * 14 13 12 38 38 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 39 39 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 40 40 H 1.07999 * 119.88507 * 0.02562 * 21 20 19 41 41 H 1.07999 * 119.89334 * 180.25498 * 22 21 20 42 42 H 1.07992 * 120.01926 * 179.70124 * 23 22 21 43 43 H 0.96996 * 120.00312 * 0.02562 * 26 25 24 44 44 H 0.97003 * 119.99890 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.10682 * 359.97438 * 28 20 19 46 46 H 1.09005 * 109.58470 * 66.42378 * 29 15 14 47 47 H 1.08995 * 109.58817 * 186.71135 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9682 -3.5513 -0.5898 12 6 1.1802 -4.7541 -0.6056 13 6 1.9570 -6.0724 -0.6363 14 6 2.3231 -6.4784 0.7901 15 7 3.0406 -5.3697 1.4341 16 6 4.2451 -5.5704 2.0044 17 8 4.8296 -4.6458 2.5284 18 6 4.8688 -6.9422 1.9851 19 8 6.1372 -6.8980 2.6417 20 6 6.8361 -8.0614 2.7124 21 6 6.3075 -9.2230 2.1654 22 6 7.0165 -10.4081 2.2294 23 6 8.2497 -10.4469 2.8477 24 6 8.7866 -9.2857 3.4055 25 6 10.1078 -9.3233 4.0682 26 7 10.7956 -10.4804 4.1350 27 8 10.5737 -8.3106 4.5529 28 6 8.0727 -8.0890 3.3346 29 6 2.4228 -4.0366 1.4391 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 0.2817 -4.8760 -0.0007 33 1 0.8991 -4.4748 -1.6210 34 1 1.3396 -6.8480 -1.0895 35 1 2.8679 -5.9443 -1.2211 36 1 2.9619 -7.3612 0.7648 37 1 1.4137 -6.6988 1.3492 38 1 4.2161 -7.6453 2.5026 39 1 5.0049 -7.2648 0.9530 40 1 5.3410 -9.1996 1.6839 41 1 6.6018 -11.3073 1.7985 42 1 8.7988 -11.3753 2.9002 43 1 10.4241 -11.2885 3.7479 44 1 11.6622 -10.5052 4.5701 45 1 8.4835 -7.1870 3.7637 46 1 1.5216 -4.0539 2.0521 47 1 3.1263 -3.3093 1.8441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000988910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:57 Heat of formation + Delta-G solvation = -64.970613 kcal Electronic energy + Delta-G solvation = -29503.082310 eV Core-core repulsion = 25265.585098 eV Total energy + Delta-G solvation = -4237.497212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93457 -40.14391 -39.34402 -37.65754 -36.98077 -34.56873 -34.22776 -32.43775 -31.66268 -31.29942 -30.63716 -29.14013 -27.76217 -25.18169 -24.38617 -23.92856 -22.86951 -21.97168 -21.19456 -20.26379 -19.12653 -18.96050 -17.83258 -17.12273 -17.03700 -16.84661 -16.59677 -16.45904 -15.86890 -15.19872 -15.11666 -14.93535 -14.56992 -14.53011 -14.25586 -14.12917 -13.91620 -13.63558 -13.46353 -13.07869 -12.99080 -12.64448 -12.49025 -12.39600 -12.29316 -11.54163 -11.45119 -11.38690 -11.10316 -10.84851 -10.72286 -10.64078 -10.50943 -10.25124 -10.17539 -9.88307 -9.79726 -9.59552 -9.50140 -9.10174 -8.68998 -8.44599 -7.02879 -5.80154 -3.10288 0.35598 0.95138 2.33060 2.44006 2.61828 3.01998 3.41672 3.42830 3.46824 3.50043 3.52638 4.20594 4.25603 4.42725 4.47279 4.56173 4.58192 4.67288 4.73158 4.78869 4.91799 4.98100 5.03271 5.14184 5.43206 5.44137 5.47038 5.51188 5.72621 5.73480 5.84421 5.85048 5.87445 5.94602 6.08226 6.10258 6.14324 6.27863 6.32218 6.42380 6.61996 6.76988 6.83975 6.92112 7.00175 7.49357 7.70541 7.79631 8.23394 8.37933 9.49888 10.02746 10.37950 11.41808 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.001975 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.201312 B =14174.783325 C =15580.109796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.131 4.131 14 C 0.105 3.895 15 N -0.603 5.603 16 C 0.511 3.489 17 O -0.515 6.515 18 C 0.042 3.958 19 O -0.284 6.284 20 C 0.129 3.871 21 C -0.185 4.185 22 C -0.085 4.085 23 C -0.128 4.128 24 C -0.101 4.101 25 C 0.564 3.436 26 N -0.850 5.850 27 O -0.532 6.532 28 C -0.088 4.088 29 C 0.093 3.907 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.401 0.599 44 H 0.406 0.594 45 H 0.148 0.852 46 H 0.064 0.936 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.795 -30.937 2.564 33.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.018 4.018 15 N -0.339 5.339 16 C 0.296 3.704 17 O -0.389 6.389 18 C -0.037 4.037 19 O -0.196 6.196 20 C 0.083 3.917 21 C -0.204 4.204 22 C -0.103 4.103 23 C -0.147 4.147 24 C -0.104 4.104 25 C 0.350 3.650 26 N -0.415 5.415 27 O -0.409 6.409 28 C -0.107 4.107 29 C -0.031 4.031 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.145 0.855 43 H 0.231 0.769 44 H 0.237 0.763 45 H 0.165 0.835 46 H 0.082 0.918 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.408 -29.290 3.174 31.968 hybrid contribution 0.020 0.189 -0.164 0.251 sum 12.429 -29.101 3.010 31.786 Atomic orbital electron populations 1.69650 1.05121 1.25924 1.57267 1.24748 0.95528 0.97788 1.02503 0.86260 0.78566 0.83292 0.78058 1.21182 1.21664 1.21034 1.19226 0.91102 0.83952 1.43335 0.91056 1.42360 1.05793 0.99538 1.88054 1.20494 0.94975 0.86531 0.92327 0.93066 1.21828 0.98696 0.93968 1.01983 1.21819 1.01084 0.98465 0.95608 1.21700 0.97142 0.88599 0.94364 1.48221 1.18220 1.11607 1.55835 1.19879 0.81596 0.89280 0.79634 1.90779 1.60977 1.43471 1.43699 1.22637 0.84574 0.97770 0.98708 1.86232 1.30612 1.29273 1.73445 1.18927 0.91892 0.85212 0.95686 1.21511 1.01929 0.92811 1.04191 1.20870 0.94078 0.97562 0.97804 1.21140 0.96671 0.97128 0.99764 1.19586 0.94947 0.94113 1.01788 1.18217 0.84705 0.83347 0.78767 1.43722 1.24000 1.11436 1.62325 1.90862 1.69734 1.33574 1.46703 1.20519 0.92040 0.98869 0.99321 1.22881 0.97830 0.81066 1.01293 0.93396 0.78033 0.91924 0.91263 0.90779 0.91506 0.90766 0.90951 0.89037 0.88924 0.84783 0.84874 0.85464 0.76921 0.76279 0.83457 0.91787 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 7 C -0.25 -6.81 9.93 -15.06 -0.15 -6.96 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.72 -17.52 5.13 -53.31 -0.27 -17.79 16 10 C 0.17 3.23 2.92 -67.81 -0.20 3.03 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.13 -1.85 5.36 -26.69 -0.14 -1.99 16 13 C -0.13 -1.36 6.06 -26.83 -0.16 -1.52 16 14 C 0.11 1.01 6.32 -3.93 -0.02 0.99 16 15 N -0.60 -8.65 2.98 -173.03 -0.52 -9.16 16 16 C 0.51 7.92 7.78 -10.98 -0.09 7.83 16 17 O -0.51 -10.72 15.91 -14.35 -0.23 -10.95 16 18 C 0.04 0.44 3.57 36.01 0.13 0.57 16 19 O -0.28 -3.79 9.67 -39.37 -0.38 -4.17 16 20 C 0.13 1.39 6.68 -39.28 -0.26 1.13 16 21 C -0.19 -1.37 9.03 -39.35 -0.36 -1.73 16 22 C -0.09 -0.48 10.03 -39.66 -0.40 -0.88 16 23 C -0.13 -0.74 9.54 -39.17 -0.37 -1.12 16 24 C -0.10 -0.91 5.87 -104.98 -0.62 -1.52 16 25 C 0.56 5.36 8.05 -12.32 -0.10 5.26 16 26 N -0.85 -3.94 8.82 30.53 0.27 -3.67 16 27 O -0.53 -7.48 17.18 5.32 0.09 -7.39 16 28 C -0.09 -1.00 9.53 -39.02 -0.37 -1.37 16 29 C 0.09 1.71 6.02 -3.71 -0.02 1.69 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 31 H 0.39 9.88 7.80 -40.82 -0.32 9.57 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.46 5.93 -51.93 -0.31 0.15 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.68 7.46 -51.93 -0.39 0.30 16 39 H 0.09 0.72 7.21 -51.93 -0.37 0.35 16 40 H 0.13 0.67 6.28 -52.49 -0.33 0.34 16 41 H 0.13 0.37 8.06 -52.49 -0.42 -0.06 16 42 H 0.13 0.28 6.40 -52.49 -0.34 -0.05 16 43 H 0.40 0.59 6.86 -40.82 -0.28 0.31 16 44 H 0.41 1.42 8.93 -40.82 -0.36 1.06 16 45 H 0.15 1.90 7.65 -52.49 -0.40 1.50 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.09 2.03 7.00 -51.93 -0.36 1.67 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -37.81 388.44 -9.10 -46.91 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.39 Total: 6.72 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -3.23 Total: 3.05 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.21 Total: -57.75 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.52 Total: -22.52 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.81 -9.10 -46.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000988910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.060 kcal (2) G-P(sol) polarization free energy of solvation -37.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds