Wall clock time and date at job start Wed Apr 1 2020 04:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00155 * 2 1 4 4 H 1.48505 * 109.46794 * 239.99491 * 3 2 1 5 5 H 1.48496 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47010 * 119.99677 * 3 2 1 7 7 C 1.38809 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99912 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00011 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49934 * 324.93153 * 10 9 7 12 12 C 1.53042 * 109.52370 * 204.84979 * 10 9 7 13 13 C 1.53039 * 109.54031 * 178.66886 * 12 10 9 14 14 C 1.52760 * 109.38459 * 61.24177 * 13 12 10 15 15 N 1.46931 * 109.00543 * 305.58756 * 14 13 12 16 16 C 1.34777 * 120.63086 * 233.58109 * 15 14 13 17 17 O 1.21283 * 119.99750 * 179.72075 * 16 15 14 18 18 C 1.50702 * 119.99928 * 0.02562 * 16 15 14 19 19 O 1.42899 * 109.46876 * 179.72354 * 18 16 15 20 20 C 1.35910 * 116.99557 * 179.97438 * 19 18 16 21 21 C 1.38848 * 119.98746 * 359.72195 * 20 19 18 22 22 C 1.38249 * 120.23715 * 179.72183 * 21 20 19 23 23 C 1.38006 * 120.20835 * 0.55739 * 22 21 20 24 24 C 1.39561 * 119.96122 * 359.72175 * 23 22 21 25 25 C 1.47863 * 120.11498 * 180.02562 * 24 23 22 26 26 N 1.34778 * 119.99982 * 359.97160 * 25 24 23 27 27 O 1.21554 * 120.00091 * 179.97438 * 25 24 23 28 28 C 1.38451 * 119.98274 * 179.97438 * 20 19 18 29 29 C 1.46925 * 118.73924 * 53.31068 * 15 14 13 30 30 H 0.97001 * 119.99362 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00045 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46134 * 298.69188 * 12 10 9 33 33 H 1.09001 * 109.46045 * 58.65703 * 12 10 9 34 34 H 1.09004 * 109.49958 * 181.31755 * 13 12 10 35 35 H 1.09000 * 109.49401 * 301.38285 * 13 12 10 36 36 H 1.08997 * 109.51122 * 185.71191 * 14 13 12 37 37 H 1.09000 * 109.43557 * 65.42042 * 14 13 12 38 38 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 39 39 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 40 40 H 1.07999 * 119.88507 * 0.02562 * 21 20 19 41 41 H 1.07999 * 119.89334 * 180.25498 * 22 21 20 42 42 H 1.07992 * 120.01926 * 179.70124 * 23 22 21 43 43 H 0.96996 * 120.00312 * 0.02562 * 26 25 24 44 44 H 0.97003 * 119.99890 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.10682 * 359.97438 * 28 20 19 46 46 H 1.09005 * 109.58470 * 66.42378 * 29 15 14 47 47 H 1.08995 * 109.58817 * 186.71135 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9682 -3.5513 -0.5898 12 6 1.1802 -4.7541 -0.6056 13 6 1.9570 -6.0724 -0.6363 14 6 2.3231 -6.4784 0.7901 15 7 3.0406 -5.3697 1.4341 16 6 4.2451 -5.5704 2.0044 17 8 4.8296 -4.6458 2.5284 18 6 4.8688 -6.9422 1.9851 19 8 6.1372 -6.8980 2.6417 20 6 6.8361 -8.0614 2.7124 21 6 6.3075 -9.2230 2.1654 22 6 7.0165 -10.4081 2.2294 23 6 8.2497 -10.4469 2.8477 24 6 8.7866 -9.2857 3.4055 25 6 10.1078 -9.3233 4.0682 26 7 10.7956 -10.4804 4.1350 27 8 10.5737 -8.3106 4.5529 28 6 8.0727 -8.0890 3.3346 29 6 2.4228 -4.0366 1.4391 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 0.2817 -4.8760 -0.0007 33 1 0.8991 -4.4748 -1.6210 34 1 1.3396 -6.8480 -1.0895 35 1 2.8679 -5.9443 -1.2211 36 1 2.9619 -7.3612 0.7648 37 1 1.4137 -6.6988 1.3492 38 1 4.2161 -7.6453 2.5026 39 1 5.0049 -7.2648 0.9530 40 1 5.3410 -9.1996 1.6839 41 1 6.6018 -11.3073 1.7985 42 1 8.7988 -11.3753 2.9002 43 1 10.4241 -11.2885 3.7479 44 1 11.6622 -10.5052 4.5701 45 1 8.4835 -7.1870 3.7637 46 1 1.5216 -4.0539 2.0521 47 1 3.1263 -3.3093 1.8441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000988910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:56 Heat of formation + Delta-G solvation = -95.016282 kcal Electronic energy + Delta-G solvation = -29504.385188 eV Core-core repulsion = 25265.585098 eV Total energy + Delta-G solvation = -4238.800090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73554 -41.11568 -40.21580 -38.76488 -37.92397 -36.26675 -34.86974 -34.01169 -32.76938 -32.25008 -31.40501 -30.41941 -28.96822 -26.22729 -25.88617 -25.07655 -23.47152 -23.24933 -22.11263 -21.40401 -20.11231 -19.78479 -19.14874 -18.57235 -17.82113 -17.74621 -17.46926 -17.14967 -16.83950 -16.63077 -16.03209 -15.98622 -15.78714 -15.50860 -15.43848 -15.18893 -15.11107 -14.79590 -14.65637 -14.13700 -14.04052 -13.80430 -13.66755 -13.43567 -13.10880 -12.91165 -12.84385 -12.50644 -12.28053 -12.18063 -12.13072 -12.02221 -11.88903 -11.68542 -11.34842 -11.27355 -11.13495 -10.85560 -10.78370 -10.06703 -9.80456 -9.32656 -9.04172 -8.01325 -5.30167 -0.24729 0.37683 1.39266 1.42732 1.45327 1.47935 1.51005 1.78574 2.30731 2.50921 2.65244 2.81770 3.31240 3.33833 3.71880 3.77560 3.83590 3.92869 3.99576 4.04533 4.10448 4.11567 4.14433 4.21337 4.32368 4.34864 4.38707 4.51673 4.62405 4.75982 4.87421 4.87755 4.90971 5.04831 5.17165 5.19237 5.27012 5.34682 5.38226 5.41942 5.47043 5.53858 5.63100 5.83593 6.21560 6.25484 6.38944 6.42072 7.07302 7.25024 7.28521 8.01127 8.26019 9.20775 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.001975 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.201312 B =14174.783325 C =15580.109796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.066 4.066 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.248 4.248 8 H 0.062 0.938 9 N -0.729 5.729 10 C 0.166 3.834 11 H 0.030 0.970 12 C -0.119 4.119 13 C -0.122 4.122 14 C 0.096 3.904 15 N -0.599 5.599 16 C 0.500 3.500 17 O -0.587 6.587 18 C 0.050 3.950 19 O -0.328 6.328 20 C 0.104 3.896 21 C -0.175 4.175 22 C -0.075 4.075 23 C -0.110 4.110 24 C -0.115 4.115 25 C 0.558 3.442 26 N -0.822 5.822 27 O -0.594 6.594 28 C -0.127 4.127 29 C 0.107 3.893 30 H 0.253 0.747 31 H 0.378 0.622 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.169 0.831 41 H 0.180 0.820 42 H 0.171 0.829 43 H 0.420 0.580 44 H 0.414 0.586 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.293 -36.878 0.939 38.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.259 4.259 3 Si 0.795 3.205 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.379 4.379 8 H 0.080 0.920 9 N -0.369 5.369 10 C 0.056 3.944 11 H 0.048 0.952 12 C -0.158 4.158 13 C -0.161 4.161 14 C -0.024 4.024 15 N -0.333 5.333 16 C 0.288 3.712 17 O -0.467 6.467 18 C -0.028 4.028 19 O -0.242 6.242 20 C 0.059 3.941 21 C -0.193 4.193 22 C -0.093 4.093 23 C -0.129 4.129 24 C -0.118 4.118 25 C 0.344 3.656 26 N -0.387 5.387 27 O -0.476 6.476 28 C -0.147 4.147 29 C -0.019 4.019 30 H 0.062 0.938 31 H 0.211 0.789 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.144 0.856 37 H 0.110 0.890 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.186 0.814 41 H 0.197 0.803 42 H 0.188 0.812 43 H 0.254 0.746 44 H 0.246 0.754 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.920 -35.378 1.513 37.363 hybrid contribution 0.228 1.867 0.337 1.911 sum 12.148 -33.511 1.850 35.693 Atomic orbital electron populations 1.69771 1.06174 1.26239 1.58891 1.25454 0.96415 1.00694 1.03333 0.85336 0.77423 0.79786 0.77976 1.20372 1.21352 1.21268 1.19455 0.90951 0.85617 1.41925 0.91963 1.42495 1.05541 1.00587 1.88261 1.20685 0.94759 0.86238 0.92687 0.95191 1.21754 0.98513 0.94591 1.00897 1.21830 1.01046 0.96687 0.96517 1.22199 0.98638 0.88159 0.93420 1.48243 1.18241 1.11065 1.55732 1.20948 0.81215 0.90918 0.78097 1.90749 1.62856 1.46263 1.46792 1.22756 0.84296 0.94324 1.01377 1.86167 1.31940 1.31481 1.74597 1.19061 0.91732 0.85795 0.97471 1.21917 1.03106 0.91664 1.02625 1.21449 0.93261 0.98364 0.96196 1.21640 0.96943 0.97055 0.97251 1.19629 0.94699 0.94613 1.02872 1.18506 0.85196 0.83633 0.78274 1.43498 1.23705 1.10661 1.60823 1.90831 1.71182 1.35975 1.49599 1.20442 0.93752 0.98780 1.01685 1.22251 0.96548 0.83025 1.00068 0.93783 0.78911 0.91326 0.92087 0.86471 0.91632 0.85595 0.89009 0.84736 0.85026 0.81371 0.80316 0.81209 0.74634 0.75390 0.87648 0.91999 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.05 13.06 21.65 0.28 -58.77 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 3 Si 0.97 48.27 29.55 68.60 2.03 50.30 16 4 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 7 C -0.25 -14.37 9.93 84.03 0.83 -13.54 16 8 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 9 N -0.73 -37.14 5.13 -322.57 -1.65 -38.79 16 10 C 0.17 6.56 2.92 45.07 0.13 6.70 16 11 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 12 C -0.12 -3.30 5.36 30.62 0.16 -3.14 16 13 C -0.12 -2.00 6.06 30.53 0.19 -1.82 16 14 C 0.10 1.39 6.32 86.22 0.54 1.94 16 15 N -0.60 -16.54 2.98 -819.72 -2.44 -18.98 16 16 C 0.50 15.49 7.78 87.66 0.68 16.17 16 17 O -0.59 -26.35 15.91 16.00 0.25 -26.10 16 18 C 0.05 0.91 3.57 71.24 0.25 1.16 16 19 O -0.33 -8.87 9.67 -73.50 -0.71 -9.58 16 20 C 0.10 2.17 6.68 22.47 0.15 2.32 16 21 C -0.17 -1.75 9.03 22.42 0.20 -1.55 16 22 C -0.08 -0.39 10.03 22.22 0.22 -0.17 16 23 C -0.11 -0.79 9.54 22.53 0.21 -0.58 16 24 C -0.11 -1.99 5.87 -20.10 -0.12 -2.11 16 25 C 0.56 10.75 8.05 86.79 0.70 11.45 16 26 N -0.82 -6.05 8.82 -175.59 -1.55 -7.60 16 27 O -0.59 -18.29 17.18 -3.89 -0.07 -18.36 16 28 C -0.13 -3.10 9.53 22.63 0.22 -2.88 16 29 C 0.11 4.10 6.02 86.36 0.52 4.62 16 30 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.38 20.11 7.80 -92.71 -0.72 19.38 16 32 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 34 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.13 0.61 5.93 -2.39 -0.01 0.59 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.14 1.27 7.46 -2.38 -0.02 1.25 16 39 H 0.13 1.35 7.21 -2.39 -0.02 1.33 16 40 H 0.17 0.44 6.28 -2.91 -0.02 0.42 16 41 H 0.18 -0.57 8.06 -2.91 -0.02 -0.59 16 42 H 0.17 -0.32 6.40 -2.91 -0.02 -0.34 16 43 H 0.42 -0.37 6.86 -92.71 -0.64 -1.00 16 44 H 0.41 2.27 8.93 -92.71 -0.83 1.44 16 45 H 0.11 3.31 7.65 -2.91 -0.02 3.28 16 46 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 47 H 0.04 2.05 7.00 -2.39 -0.02 2.03 16 Total: -1.00 -96.58 388.44 0.37 -96.21 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -1.14 Total: 16.52 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 5.37 Total: 15.15 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -5.36 Total: -124.14 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -0.52 Total: -54.04 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -96.58 0.37 -96.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000988910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.197 kcal (2) G-P(sol) polarization free energy of solvation -96.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds