Wall clock time and date at job start Wed Apr 1 2020 05:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 119.99969 * 2 1 4 4 H 1.48497 * 109.46944 * 274.91896 * 3 2 1 5 5 H 1.48503 * 109.47195 * 34.91934 * 3 2 1 6 6 H 1.48498 * 109.47244 * 154.91826 * 3 2 1 7 7 C 1.38807 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00405 * 206.83582 * 7 2 1 9 9 N 1.36938 * 120.00243 * 26.83450 * 7 2 1 10 10 C 1.46981 * 120.77084 * 29.83201 * 9 7 2 11 11 C 1.53095 * 108.61523 * 125.70395 * 10 9 7 12 12 C 1.53163 * 109.58247 * 55.34679 * 11 10 9 13 13 H 1.09001 * 110.05757 * 60.59964 * 12 11 10 14 14 C 1.53146 * 109.59401 * 299.43400 * 12 11 10 15 15 H 1.09007 * 108.58357 * 179.17226 * 14 12 11 16 16 C 1.52857 * 109.36737 * 298.30675 * 14 12 11 17 17 C 1.53111 * 109.34710 * 297.99067 * 16 14 12 18 18 C 1.53147 * 109.48034 * 60.65441 * 17 16 14 19 19 N 1.46953 * 109.09431 * 305.86775 * 18 17 16 20 20 C 1.34772 * 120.84751 * 234.07774 * 19 18 17 21 21 O 1.21609 * 120.00170 * 173.73335 * 20 19 18 22 22 C 1.47288 * 119.99636 * 353.72749 * 20 19 18 23 23 C 1.36577 * 125.80100 * 172.87634 * 22 20 19 24 24 C 1.40064 * 106.92253 * 179.97438 * 23 22 20 25 25 C 1.36571 * 106.92721 * 359.97438 * 24 23 22 26 26 C 1.47292 * 125.80417 * 180.02562 * 25 24 23 27 27 N 1.34773 * 119.99867 * 180.02562 * 26 25 24 28 28 O 1.21610 * 119.99909 * 0.02562 * 26 25 24 29 29 O 1.34543 * 108.38859 * 359.78091 * 25 24 23 30 30 C 1.46892 * 120.77736 * 209.86226 * 9 7 2 31 31 H 0.97002 * 120.00604 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.61539 * 245.44540 * 10 9 7 33 33 H 1.09001 * 109.61321 * 5.97295 * 10 9 7 34 34 H 1.08993 * 109.45263 * 175.38348 * 11 10 9 35 35 H 1.09002 * 109.45637 * 295.34099 * 11 10 9 36 36 H 1.08994 * 109.48933 * 178.03106 * 16 14 12 37 37 H 1.08999 * 109.48617 * 57.95017 * 16 14 12 38 38 H 1.08999 * 109.47505 * 300.64363 * 17 16 14 39 39 H 1.09003 * 109.46649 * 180.65331 * 17 16 14 40 40 H 1.08998 * 109.54674 * 65.77800 * 18 17 16 41 41 H 1.09004 * 109.54567 * 185.96792 * 18 17 16 42 42 H 1.07996 * 126.54131 * 359.97438 * 23 22 20 43 43 H 1.08003 * 126.53454 * 180.02562 * 24 23 22 44 44 H 0.96996 * 120.00290 * 0.02562 * 27 26 25 45 45 H 0.97002 * 120.00104 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.51942 * 113.40073 * 30 9 7 47 47 H 1.08994 * 109.55889 * 353.25891 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3936 2.1064 -1.3949 5 1 1.5034 2.6205 0.8014 6 1 3.5958 1.4125 0.5935 7 6 2.0102 -1.2021 0.0005 8 1 3.0030 -1.2523 0.4228 9 7 1.4362 -2.3244 -0.5343 10 6 0.4688 -2.2221 -1.6362 11 6 0.9457 -3.1093 -2.7891 12 6 1.1517 -4.5406 -2.2842 13 1 0.2127 -4.9410 -1.9020 14 6 2.2137 -4.5481 -1.1807 15 1 2.3364 -5.5706 -0.8236 16 6 3.5416 -4.0509 -1.7517 17 6 4.0053 -5.0015 -2.8588 18 6 2.9608 -5.0299 -3.9784 19 7 1.6493 -5.3613 -3.4040 20 6 0.9230 -6.3886 -3.8870 21 8 -0.1052 -6.7215 -3.3295 22 6 1.3746 -7.1081 -5.0903 23 6 0.8120 -8.2432 -5.6007 24 6 1.5483 -8.5855 -6.7419 25 6 2.5285 -7.6445 -6.8798 26 6 3.5421 -7.6062 -7.9478 27 7 4.4596 -6.6193 -7.9710 28 8 3.5510 -8.4651 -8.8087 29 8 2.4074 -6.7555 -5.8773 30 6 1.7723 -3.6586 -0.0198 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5103 -2.5591 -1.2960 33 1 0.4058 -1.1873 -1.9728 34 1 0.1974 -3.1081 -3.5816 35 1 1.8877 -2.7232 -3.1787 36 1 4.2899 -4.0222 -0.9598 37 1 3.4085 -3.0505 -2.1635 38 1 4.1265 -6.0044 -2.4494 39 1 4.9580 -4.6552 -3.2595 40 1 2.9127 -4.0519 -4.4571 41 1 3.2369 -5.7838 -4.7157 42 1 -0.0384 -8.7753 -5.2006 43 1 1.3736 -9.4317 -7.3899 44 1 4.4527 -5.9345 -7.2841 45 1 5.1274 -6.5942 -8.6741 46 1 0.8966 -4.0949 0.4608 47 1 2.5825 -3.5768 0.7047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021631379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:52 Heat of formation + Delta-G solvation = -24.576881 kcal Electronic energy + Delta-G solvation = -31734.792221 eV Core-core repulsion = 27499.046613 eV Total energy + Delta-G solvation = -4235.745608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.22679 -40.39353 -39.59492 -38.20518 -35.73655 -34.37113 -33.53933 -32.92502 -32.42177 -30.81807 -29.91095 -29.79991 -25.83317 -25.70979 -24.22478 -22.88100 -22.27532 -22.02682 -21.58003 -20.98425 -20.17526 -18.68311 -17.96022 -17.54019 -17.26771 -17.00774 -16.71570 -16.17828 -15.34118 -15.06958 -14.92459 -14.74266 -14.52825 -14.26393 -13.99438 -13.72593 -13.58665 -13.46947 -13.41295 -13.16384 -12.87153 -12.63437 -12.38159 -12.31227 -11.51059 -11.35833 -11.01638 -10.94847 -10.80312 -10.73902 -10.61357 -10.48020 -10.33285 -10.29559 -10.19252 -10.17056 -10.04538 -9.75925 -9.50466 -9.16493 -8.56994 -8.39996 -6.76040 -5.88327 -3.26038 0.30507 1.59912 1.96621 2.69855 2.79871 2.96698 3.08955 3.33342 3.42317 3.43138 4.11504 4.43209 4.45052 4.52449 4.80838 4.98311 5.03727 5.13563 5.16191 5.24316 5.26467 5.37291 5.42481 5.49448 5.58530 5.70773 5.81993 5.84904 5.93280 5.97003 6.03862 6.10707 6.20514 6.25386 6.28690 6.35923 6.39958 6.50022 6.71159 6.73856 6.77944 6.79632 6.86191 7.15354 7.31242 7.44091 7.60210 7.78283 7.93145 8.36734 9.11387 9.76892 10.36677 11.19733 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.002777 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.021093 B =10080.804545 C =10698.874423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.011 3.989 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.585 5.585 10 C 0.176 3.824 11 C -0.148 4.148 12 C 0.154 3.846 13 H 0.099 0.901 14 C -0.108 4.108 15 H 0.060 0.940 16 C -0.108 4.108 17 C -0.133 4.133 18 C 0.095 3.905 19 N -0.591 5.591 20 C 0.593 3.407 21 O -0.516 6.516 22 C -0.024 4.024 23 C -0.141 4.141 24 C -0.123 4.123 25 C -0.070 4.070 26 C 0.611 3.389 27 N -0.841 5.841 28 O -0.520 6.520 29 O -0.146 6.146 30 C 0.152 3.848 31 H 0.254 0.746 32 H 0.023 0.977 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.409 0.591 45 H 0.411 0.589 46 H 0.020 0.980 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -13.393 -13.249 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.189 4.189 3 Si 0.721 3.279 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.308 5.308 10 C 0.049 3.951 11 C -0.188 4.188 12 C 0.053 3.947 13 H 0.117 0.883 14 C -0.129 4.129 15 H 0.078 0.922 16 C -0.146 4.146 17 C -0.171 4.171 18 C -0.027 4.027 19 N -0.322 5.322 20 C 0.379 3.621 21 O -0.393 6.393 22 C -0.078 4.078 23 C -0.161 4.161 24 C -0.143 4.143 25 C -0.123 4.123 26 C 0.395 3.605 27 N -0.404 5.404 28 O -0.397 6.397 29 O -0.043 6.043 30 C 0.025 3.975 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.187 0.813 43 H 0.185 0.815 44 H 0.238 0.762 45 H 0.243 0.757 46 H 0.038 0.962 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.734 -13.762 -13.333 20.663 hybrid contribution 0.607 1.138 -0.075 1.291 sum 8.340 -12.624 -13.408 20.216 Atomic orbital electron populations 1.70169 1.05490 1.25808 1.51494 1.24997 0.94887 0.98676 1.00375 0.86455 0.79656 0.84180 0.77630 1.21456 1.21901 1.20275 1.19054 0.96736 0.86508 1.36766 0.91695 1.44030 1.50185 1.00624 1.35921 1.20635 0.91066 0.98044 0.85317 1.22597 1.01376 0.94425 1.00384 1.21537 0.97951 0.90438 0.84727 0.88328 1.21850 0.94756 0.99550 0.96716 0.92200 1.21495 0.96247 0.99663 0.97151 1.21948 0.97656 1.00725 0.96740 1.22148 0.82258 1.02071 0.96263 1.48532 1.18978 1.29844 1.34821 1.16841 0.83943 0.79885 0.81407 1.90876 1.24271 1.65851 1.58334 1.22728 0.90814 0.98910 0.95339 1.21994 1.01964 0.96242 0.95901 1.21979 0.94066 1.00114 0.98165 1.22388 1.02318 0.94276 0.93307 1.16625 0.79635 0.81743 0.82478 1.43696 1.33890 1.29426 1.33432 1.90923 1.72820 1.38592 1.37325 1.84272 1.43018 1.45327 1.31689 1.20802 0.97825 0.86465 0.92418 0.93589 0.95887 0.90460 0.93037 0.91687 0.92005 0.89945 0.92086 0.90927 0.90706 0.88893 0.81298 0.81472 0.76205 0.75689 0.96162 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 12.02 55.49 0.67 -24.33 16 2 C 0.01 0.30 4.62 -17.44 -0.08 0.22 16 3 Si 0.89 20.71 29.63 -169.99 -5.04 15.68 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.73 9.49 -15.06 -0.14 -6.87 16 8 H 0.07 1.66 7.96 -52.48 -0.42 1.24 16 9 N -0.59 -13.51 2.62 -172.63 -0.45 -13.96 16 10 C 0.18 3.91 5.42 -3.73 -0.02 3.89 16 11 C -0.15 -2.61 5.02 -26.60 -0.13 -2.75 16 12 C 0.15 2.54 2.64 -67.23 -0.18 2.36 16 13 H 0.10 1.82 7.11 -51.93 -0.37 1.45 16 14 C -0.11 -1.73 2.45 -90.74 -0.22 -1.95 16 15 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.11 -1.54 4.86 -26.75 -0.13 -1.67 16 17 C -0.13 -1.45 6.08 -26.60 -0.16 -1.61 16 18 C 0.09 1.05 5.65 -3.72 -0.02 1.03 16 19 N -0.59 -8.30 2.67 -166.05 -0.44 -8.74 16 20 C 0.59 8.74 7.68 -12.58 -0.10 8.65 16 21 O -0.52 -9.15 16.37 5.27 0.09 -9.06 16 22 C -0.02 -0.29 6.79 -36.50 -0.25 -0.54 16 23 C -0.14 -1.50 10.60 -39.50 -0.42 -1.92 16 24 C -0.12 -1.19 10.60 -39.50 -0.42 -1.61 16 25 C -0.07 -0.69 7.14 -36.50 -0.26 -0.95 16 26 C 0.61 5.72 8.08 -12.58 -0.10 5.61 16 27 N -0.84 -4.62 8.87 30.40 0.27 -4.35 16 28 O -0.52 -6.48 17.70 5.27 0.09 -6.39 16 29 O -0.15 -1.48 6.98 4.37 0.03 -1.45 16 30 C 0.15 2.98 5.90 -3.95 -0.02 2.95 16 31 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.91 6.50 -51.93 -0.34 1.58 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.12 5.32 -51.93 -0.28 0.84 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.35 6.15 -51.93 -0.32 1.03 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.81 7.25 -51.93 -0.38 0.44 16 41 H 0.09 0.88 4.18 -53.28 -0.22 0.66 16 42 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 44 H 0.41 1.56 8.59 -40.82 -0.35 1.21 16 45 H 0.41 1.55 8.93 -40.82 -0.36 1.18 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 LS Contribution 372.55 15.07 5.61 5.61 Total: -1.00 -31.59 372.55 -8.22 -39.80 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.39 Total: 2.33 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.66 Total: 4.85 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.04 Total: -51.38 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.21 Total: -16.89 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.04 Total: 15.68 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.59 -8.22 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021631379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.228 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds