Wall clock time and date at job start Wed Apr 1 2020 05:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 119.99969 * 2 1 4 4 H 1.48497 * 109.46944 * 274.91896 * 3 2 1 5 5 H 1.48503 * 109.47195 * 34.91934 * 3 2 1 6 6 H 1.48498 * 109.47244 * 154.91826 * 3 2 1 7 7 C 1.38807 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00405 * 206.83582 * 7 2 1 9 9 N 1.36938 * 120.00243 * 26.83450 * 7 2 1 10 10 C 1.46981 * 120.77084 * 29.83201 * 9 7 2 11 11 C 1.53095 * 108.61523 * 125.70395 * 10 9 7 12 12 C 1.53163 * 109.58247 * 55.34679 * 11 10 9 13 13 H 1.09001 * 110.05757 * 60.59964 * 12 11 10 14 14 C 1.53146 * 109.59401 * 299.43400 * 12 11 10 15 15 H 1.09007 * 108.58357 * 179.17226 * 14 12 11 16 16 C 1.52857 * 109.36737 * 298.30675 * 14 12 11 17 17 C 1.53111 * 109.34710 * 297.99067 * 16 14 12 18 18 C 1.53147 * 109.48034 * 60.65441 * 17 16 14 19 19 N 1.46953 * 109.09431 * 305.86775 * 18 17 16 20 20 C 1.34772 * 120.84751 * 234.07774 * 19 18 17 21 21 O 1.21609 * 120.00170 * 173.73335 * 20 19 18 22 22 C 1.47288 * 119.99636 * 353.72749 * 20 19 18 23 23 C 1.36577 * 125.80100 * 172.87634 * 22 20 19 24 24 C 1.40064 * 106.92253 * 179.97438 * 23 22 20 25 25 C 1.36571 * 106.92721 * 359.97438 * 24 23 22 26 26 C 1.47292 * 125.80417 * 180.02562 * 25 24 23 27 27 N 1.34773 * 119.99867 * 180.02562 * 26 25 24 28 28 O 1.21610 * 119.99909 * 0.02562 * 26 25 24 29 29 O 1.34543 * 108.38859 * 359.78091 * 25 24 23 30 30 C 1.46892 * 120.77736 * 209.86226 * 9 7 2 31 31 H 0.97002 * 120.00604 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.61539 * 245.44540 * 10 9 7 33 33 H 1.09001 * 109.61321 * 5.97295 * 10 9 7 34 34 H 1.08993 * 109.45263 * 175.38348 * 11 10 9 35 35 H 1.09002 * 109.45637 * 295.34099 * 11 10 9 36 36 H 1.08994 * 109.48933 * 178.03106 * 16 14 12 37 37 H 1.08999 * 109.48617 * 57.95017 * 16 14 12 38 38 H 1.08999 * 109.47505 * 300.64363 * 17 16 14 39 39 H 1.09003 * 109.46649 * 180.65331 * 17 16 14 40 40 H 1.08998 * 109.54674 * 65.77800 * 18 17 16 41 41 H 1.09004 * 109.54567 * 185.96792 * 18 17 16 42 42 H 1.07996 * 126.54131 * 359.97438 * 23 22 20 43 43 H 1.08003 * 126.53454 * 180.02562 * 24 23 22 44 44 H 0.96996 * 120.00290 * 0.02562 * 27 26 25 45 45 H 0.97002 * 120.00104 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.51942 * 113.40073 * 30 9 7 47 47 H 1.08994 * 109.55889 * 353.25891 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3936 2.1064 -1.3949 5 1 1.5034 2.6205 0.8014 6 1 3.5958 1.4125 0.5935 7 6 2.0102 -1.2021 0.0005 8 1 3.0030 -1.2523 0.4228 9 7 1.4362 -2.3244 -0.5343 10 6 0.4688 -2.2221 -1.6362 11 6 0.9457 -3.1093 -2.7891 12 6 1.1517 -4.5406 -2.2842 13 1 0.2127 -4.9410 -1.9020 14 6 2.2137 -4.5481 -1.1807 15 1 2.3364 -5.5706 -0.8236 16 6 3.5416 -4.0509 -1.7517 17 6 4.0053 -5.0015 -2.8588 18 6 2.9608 -5.0299 -3.9784 19 7 1.6493 -5.3613 -3.4040 20 6 0.9230 -6.3886 -3.8870 21 8 -0.1052 -6.7215 -3.3295 22 6 1.3746 -7.1081 -5.0903 23 6 0.8120 -8.2432 -5.6007 24 6 1.5483 -8.5855 -6.7419 25 6 2.5285 -7.6445 -6.8798 26 6 3.5421 -7.6062 -7.9478 27 7 4.4596 -6.6193 -7.9710 28 8 3.5510 -8.4651 -8.8087 29 8 2.4074 -6.7555 -5.8773 30 6 1.7723 -3.6586 -0.0198 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5103 -2.5591 -1.2960 33 1 0.4058 -1.1873 -1.9728 34 1 0.1974 -3.1081 -3.5816 35 1 1.8877 -2.7232 -3.1787 36 1 4.2899 -4.0222 -0.9598 37 1 3.4085 -3.0505 -2.1635 38 1 4.1265 -6.0044 -2.4494 39 1 4.9580 -4.6552 -3.2595 40 1 2.9127 -4.0519 -4.4571 41 1 3.2369 -5.7838 -4.7157 42 1 -0.0384 -8.7753 -5.2006 43 1 1.3736 -9.4317 -7.3899 44 1 4.4527 -5.9345 -7.2841 45 1 5.1274 -6.5942 -8.6741 46 1 0.8966 -4.0949 0.4608 47 1 2.5825 -3.5768 0.7047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021631379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:51 Heat of formation + Delta-G solvation = -46.266265 kcal Electronic energy + Delta-G solvation = -31735.732743 eV Core-core repulsion = 27499.046613 eV Total energy + Delta-G solvation = -4236.686130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.05130 -41.59877 -40.35894 -39.51309 -37.20625 -35.04054 -34.65928 -34.10173 -33.82021 -32.20364 -31.35253 -31.00730 -27.36910 -26.91070 -25.40702 -24.13324 -23.62971 -23.11013 -22.84507 -21.83649 -21.23189 -19.60713 -19.27261 -18.55630 -18.40940 -17.94417 -17.82995 -17.40549 -16.85816 -16.22027 -16.09636 -15.90017 -15.60299 -15.47024 -15.17970 -15.12225 -14.86257 -14.53758 -14.33971 -14.25408 -14.20110 -14.06855 -13.63747 -13.60550 -13.18064 -12.94687 -12.64154 -12.37783 -12.26595 -12.02833 -11.87316 -11.84347 -11.74546 -11.47990 -11.46718 -11.31684 -11.20119 -10.95212 -10.89316 -10.50377 -10.05691 -9.62984 -8.70357 -7.89226 -5.29648 -0.54931 0.75699 1.06684 1.48209 1.51186 1.59740 1.78058 1.92803 1.97368 2.38327 2.53234 3.22585 3.23864 3.61374 3.65873 3.73801 3.86580 3.90712 3.93452 4.06687 4.20382 4.25517 4.35369 4.38729 4.44909 4.57083 4.67017 4.76007 4.79942 4.84044 4.90696 4.93918 5.00286 5.04974 5.08118 5.12766 5.22703 5.31485 5.36796 5.39315 5.49529 5.54058 5.67081 5.72160 5.73193 6.19274 6.25840 6.38645 6.80541 7.04309 7.13132 7.84155 8.40935 9.17274 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.002777 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.021093 B =10080.804545 C =10698.874423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.042 4.042 3 Si 0.956 3.044 4 H -0.285 1.285 5 H -0.301 1.301 6 H -0.265 1.265 7 C -0.260 4.260 8 H 0.069 0.931 9 N -0.597 5.597 10 C 0.184 3.816 11 C -0.130 4.130 12 C 0.162 3.838 13 H 0.072 0.928 14 C -0.097 4.097 15 H 0.072 0.928 16 C -0.103 4.103 17 C -0.123 4.123 18 C 0.091 3.909 19 N -0.589 5.589 20 C 0.593 3.407 21 O -0.556 6.556 22 C -0.044 4.044 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.061 4.061 26 C 0.612 3.388 27 N -0.818 5.818 28 O -0.554 6.554 29 O -0.137 6.137 30 C 0.149 3.851 31 H 0.249 0.751 32 H -0.007 1.007 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.176 0.824 43 H 0.183 0.817 44 H 0.420 0.580 45 H 0.422 0.578 46 H 0.004 0.996 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.291 -14.327 -15.144 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.239 4.239 3 Si 0.784 3.216 4 H -0.212 1.212 5 H -0.229 1.229 6 H -0.189 1.189 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.320 5.320 10 C 0.058 3.942 11 C -0.169 4.169 12 C 0.060 3.940 13 H 0.090 0.910 14 C -0.118 4.118 15 H 0.090 0.910 16 C -0.141 4.141 17 C -0.161 4.161 18 C -0.030 4.030 19 N -0.319 5.319 20 C 0.381 3.619 21 O -0.436 6.436 22 C -0.097 4.097 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.114 4.114 26 C 0.395 3.605 27 N -0.382 5.382 28 O -0.434 6.434 29 O -0.034 6.034 30 C 0.023 3.977 31 H 0.058 0.942 32 H 0.011 0.989 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.133 0.867 42 H 0.194 0.806 43 H 0.201 0.799 44 H 0.252 0.748 45 H 0.256 0.744 46 H 0.022 0.978 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.765 -14.683 -15.236 23.740 hybrid contribution -0.303 1.370 0.517 1.495 sum 10.461 -13.313 -14.719 22.435 Atomic orbital electron populations 1.70297 1.07045 1.26062 1.53844 1.25729 0.95496 1.01664 1.01011 0.85431 0.78697 0.80067 0.77360 1.21229 1.22871 1.18913 1.19371 0.96716 0.87382 1.35573 0.91350 1.44224 1.50025 1.01391 1.36371 1.20400 0.89978 0.97187 0.86665 1.22320 1.01788 0.94422 0.98401 1.21156 0.97270 0.89783 0.85831 0.90950 1.21686 0.95756 0.99194 0.95176 0.90993 1.21427 0.94926 0.99369 0.98381 1.21910 0.98701 1.00146 0.95318 1.22418 0.80604 1.03182 0.96772 1.48458 1.20057 1.29342 1.34062 1.17084 0.83328 0.79675 0.81806 1.90854 1.25941 1.67062 1.59764 1.22157 0.92483 0.99622 0.95475 1.22190 1.01689 0.95466 0.95689 1.22198 0.93815 1.00696 0.97986 1.22612 1.02166 0.93788 0.92879 1.16574 0.79951 0.82064 0.81870 1.43564 1.32696 1.28254 1.33654 1.90920 1.73780 1.40152 1.38506 1.84200 1.42390 1.45262 1.31550 1.20915 0.97249 0.85449 0.94073 0.94162 0.98900 0.93413 0.92511 0.90468 0.91578 0.91974 0.91420 0.87733 0.89988 0.86734 0.80615 0.79920 0.74834 0.74361 0.97826 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.23 12.02 21.65 0.26 -53.97 16 2 C -0.04 -2.28 4.62 84.86 0.39 -1.89 16 3 Si 0.96 43.12 29.63 68.60 2.03 45.16 16 4 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.26 -13.55 9.49 84.03 0.80 -12.75 16 8 H 0.07 3.46 7.96 -2.91 -0.02 3.44 16 9 N -0.60 -28.27 2.62 -700.07 -1.84 -30.10 16 10 C 0.18 8.55 5.42 86.32 0.47 9.01 16 11 C -0.13 -4.61 5.02 30.68 0.15 -4.46 16 12 C 0.16 5.32 2.64 44.91 0.12 5.44 16 13 H 0.07 2.78 7.11 -2.39 -0.02 2.77 16 14 C -0.10 -3.05 2.45 -10.87 -0.03 -3.08 16 15 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 16 C -0.10 -2.70 4.86 30.58 0.15 -2.55 16 17 C -0.12 -2.20 6.08 30.68 0.19 -2.01 16 18 C 0.09 1.71 5.65 86.34 0.49 2.20 16 19 N -0.59 -15.66 2.67 -797.51 -2.13 -17.79 16 20 C 0.59 16.90 7.68 86.62 0.67 17.56 16 21 O -0.56 -19.89 16.37 -4.06 -0.07 -19.96 16 22 C -0.04 -0.97 6.79 24.26 0.16 -0.80 16 23 C -0.13 -2.52 10.60 22.32 0.24 -2.29 16 24 C -0.13 -2.14 10.60 22.32 0.24 -1.91 16 25 C -0.06 -1.02 7.14 24.26 0.17 -0.85 16 26 C 0.61 9.64 8.08 86.63 0.70 10.34 16 27 N -0.82 -6.05 8.87 -175.99 -1.56 -7.61 16 28 O -0.55 -12.58 17.70 -4.06 -0.07 -12.65 16 29 O -0.14 -2.34 6.98 -7.26 -0.05 -2.39 16 30 C 0.15 5.94 5.90 86.23 0.51 6.45 16 31 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 32 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.05 2.47 6.50 -2.39 -0.02 2.46 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 2.58 5.32 -2.39 -0.01 2.56 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.91 6.15 -2.39 -0.01 1.89 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.48 7.25 -2.39 -0.02 1.46 16 41 H 0.12 1.70 4.18 -23.78 -0.10 1.60 16 42 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 43 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.42 1.42 8.59 -92.71 -0.80 0.62 16 45 H 0.42 1.71 8.93 -92.71 -0.83 0.88 16 46 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 Total: -1.00 -71.08 372.55 1.32 -69.76 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -0.68 Total: 11.13 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 5.41 Total: 18.42 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -5.26 Total: -109.46 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.19 Total: -35.00 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.16 kcal Total: -71.08 1.32 -69.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021631379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.495 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds