Wall clock time and date at job start Wed Apr 1 2020 04:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00247 * 2 1 4 4 H 1.48509 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47493 * 300.00401 * 3 2 1 6 6 H 1.48507 * 109.46893 * 60.00542 * 3 2 1 7 7 C 1.38813 * 119.99458 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00008 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00065 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46898 * 154.99940 * 10 9 7 12 12 C 1.52997 * 109.46972 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47282 * 299.99808 * 12 11 10 14 14 N 1.46499 * 109.47197 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99686 * 155.00589 * 14 13 12 16 16 O 1.21558 * 119.99929 * 359.97438 * 15 14 13 17 17 C 1.47883 * 120.00164 * 180.02562 * 15 14 13 18 18 C 1.39280 * 119.60970 * 179.97438 * 17 15 14 19 19 C 1.38534 * 119.12262 * 180.02562 * 18 17 15 20 20 C 1.38916 * 118.53468 * 359.97438 * 19 18 17 21 21 C 1.39725 * 119.43409 * 359.88606 * 20 19 18 22 22 N 1.31998 * 120.36328 * 0.20412 * 21 20 19 23 23 O 1.35984 * 120.44315 * 180.48319 * 21 20 19 24 24 C 1.43172 * 116.70190 * 342.34784 * 23 21 20 25 25 C 1.53456 * 108.31516 * 46.59020 * 24 23 21 26 26 O 1.35784 * 119.57608 * 179.72523 * 20 19 18 27 27 C 1.53004 * 109.46622 * 59.99790 * 13 12 11 28 28 C 1.52997 * 109.47464 * 300.00099 * 27 13 12 29 29 H 0.97004 * 119.99707 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00169 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47058 * 35.00045 * 10 9 7 32 32 H 1.08994 * 109.47495 * 60.00399 * 11 10 9 33 33 H 1.09003 * 109.47271 * 299.99830 * 11 10 9 34 34 H 1.09003 * 109.47824 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.47195 * 59.99975 * 12 11 10 36 36 H 1.08997 * 109.46726 * 300.00425 * 13 12 11 37 37 H 0.97000 * 120.00086 * 334.99902 * 14 13 12 38 38 H 1.07992 * 120.44168 * 0.08843 * 18 17 15 39 39 H 1.08002 * 120.73614 * 179.97438 * 19 18 17 40 40 H 1.08997 * 109.72769 * 286.86796 * 24 23 21 41 41 H 1.08996 * 109.70595 * 166.29521 * 24 23 21 42 42 H 1.09004 * 109.70919 * 180.43536 * 25 24 23 43 43 H 1.09005 * 109.71665 * 59.79857 * 25 24 23 44 44 H 1.09001 * 109.47028 * 60.00340 * 27 13 12 45 45 H 1.09001 * 109.46784 * 179.97438 * 27 13 12 46 46 H 1.08994 * 109.46859 * 300.00318 * 28 27 13 47 47 H 1.08998 * 109.47134 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.1806 -4.7521 0.6091 12 6 1.9457 -6.0770 0.6097 13 6 2.3100 -6.4563 -0.8271 14 7 3.0432 -7.7246 -0.8265 15 6 3.0351 -8.5081 -1.9230 16 8 2.4190 -8.1626 -2.9124 17 6 3.7746 -9.7887 -1.9223 18 6 3.7603 -10.5924 -3.0598 19 6 4.4561 -11.7902 -3.0478 20 6 5.1458 -12.1456 -1.8955 21 6 5.1214 -11.2916 -0.7899 22 7 4.4460 -10.1585 -0.8367 23 8 5.7973 -11.6145 0.3451 24 6 6.1837 -12.9848 0.4960 25 6 6.8095 -13.4574 -0.8231 26 8 5.8303 -13.3177 -1.8587 27 6 3.1873 -5.3609 -1.4367 28 6 2.4222 -4.0360 -1.4373 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 -0.0005 31 1 2.9686 -3.5507 0.5889 32 1 0.2699 -4.8584 0.0197 33 1 0.9214 -4.4822 1.6329 34 1 1.3206 -6.8575 1.0436 35 1 2.8562 -5.9706 1.1994 36 1 1.3995 -6.5627 -1.4168 37 1 3.5345 -8.0004 -0.0369 38 1 3.2148 -10.2853 -3.9398 39 1 4.4623 -12.4337 -3.9153 40 1 5.3073 -13.5912 0.7248 41 1 6.9127 -13.0745 1.3012 42 1 7.1056 -14.5028 -0.7357 43 1 7.6812 -12.8460 -1.0564 44 1 4.0978 -5.2544 -0.8470 45 1 3.4472 -5.6313 -2.4602 46 1 1.5117 -4.1425 -2.0270 47 1 3.0470 -3.2558 -1.8721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026521884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:06 Heat of formation + Delta-G solvation = -61.999522 kcal Electronic energy + Delta-G solvation = -29779.886665 eV Core-core repulsion = 25542.518290 eV Total energy + Delta-G solvation = -4237.368376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06528 -40.28610 -38.86132 -37.97976 -37.69625 -34.86405 -33.23775 -32.55462 -31.98458 -30.59924 -30.33710 -29.41894 -27.37189 -25.77863 -24.74017 -23.59457 -22.54642 -22.21731 -21.18633 -20.53912 -19.67292 -19.21493 -18.47004 -18.19964 -17.40815 -16.90024 -16.35529 -16.10865 -15.66769 -15.24187 -15.12989 -15.03696 -14.94705 -14.59858 -14.12972 -13.94153 -13.78494 -13.62905 -13.51018 -13.22147 -12.97547 -12.48436 -12.18442 -12.09358 -11.95561 -11.74899 -11.72890 -11.40489 -10.98916 -10.79488 -10.72464 -10.64390 -10.42359 -10.11046 -10.05334 -10.03594 -9.79506 -9.69412 -9.53748 -8.98566 -8.81387 -8.73513 -6.88579 -5.70931 -2.98959 0.18638 0.66093 2.03192 2.34702 2.52875 3.03382 3.39249 3.45443 3.46986 3.52634 3.54806 3.81635 4.04941 4.16851 4.25665 4.47027 4.55186 4.64133 4.75500 4.82122 4.85583 4.97175 5.11844 5.17606 5.35499 5.47514 5.57740 5.68342 5.74787 5.75696 5.80894 5.91636 5.95143 6.00924 6.09411 6.31805 6.32710 6.37354 6.53512 6.54919 6.63481 6.70599 6.79126 7.05647 7.21366 7.21817 7.55177 7.76441 8.12105 8.48135 9.59048 10.18248 10.52843 11.51971 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.001807 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.194117 B =15493.902458 C =15844.482876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.176 3.824 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.143 3.857 14 N -0.703 5.703 15 C 0.573 3.427 16 O -0.529 6.529 17 C 0.090 3.910 18 C -0.104 4.104 19 C -0.080 4.080 20 C 0.030 3.970 21 C 0.262 3.738 22 N -0.443 5.443 23 O -0.292 6.292 24 C 0.025 3.975 25 C 0.017 3.983 26 O -0.299 6.299 27 C -0.124 4.124 28 C -0.131 4.131 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.409 0.591 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.083 0.917 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.204 -33.239 -1.197 35.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.066 3.934 11 C -0.159 4.159 12 C -0.158 4.158 13 C 0.040 3.960 14 N -0.352 5.352 15 C 0.357 3.643 16 O -0.405 6.405 17 C -0.048 4.048 18 C -0.125 4.125 19 C -0.106 4.106 20 C -0.018 4.018 21 C 0.079 3.921 22 N -0.166 5.166 23 O -0.201 6.201 24 C -0.051 4.051 25 C -0.059 4.059 26 O -0.212 6.212 27 C -0.163 4.163 28 C -0.172 4.172 29 H 0.063 0.937 30 H 0.217 0.783 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.245 0.755 38 H 0.179 0.821 39 H 0.173 0.827 40 H 0.102 0.898 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.932 -32.344 -1.102 34.851 hybrid contribution 0.659 0.050 -0.212 0.694 sum 13.591 -32.294 -1.313 35.062 Atomic orbital electron populations 1.69677 1.05068 1.25404 1.58077 1.24739 0.95514 0.97640 1.03308 0.86140 0.78787 0.84308 0.77118 1.20602 1.21962 1.21966 1.19299 0.91008 0.84170 1.42082 0.91173 1.42440 1.05795 0.99810 1.88531 1.20251 0.94322 0.85956 0.92827 1.21748 0.98914 0.93419 1.01781 1.21753 1.00970 0.98264 0.94769 1.21207 0.95465 0.81560 0.97784 1.46036 1.51939 1.21160 1.16093 1.17614 0.80495 0.82424 0.83746 1.90829 1.43471 1.72977 1.33215 1.20920 0.97737 0.96518 0.89615 1.21965 0.98234 0.92641 0.99683 1.20934 0.96820 0.96689 0.96173 1.19953 0.98396 0.88707 0.94775 1.19260 0.95229 0.91974 0.85608 1.66603 1.06740 1.15303 1.27940 1.86267 1.69287 1.28056 1.36492 1.23793 1.01815 0.80486 0.99003 1.23785 0.90462 1.05139 0.86474 1.86278 1.50575 1.32167 1.52181 1.21907 0.98638 0.95304 1.00482 1.22214 0.99767 0.94458 1.00790 0.93655 0.78313 0.93567 0.91935 0.91343 0.91786 0.91430 0.89200 0.75537 0.82074 0.82665 0.89845 0.85007 0.85279 0.89797 0.92199 0.92292 0.92442 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.90 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 7 C -0.23 -6.58 9.93 -15.06 -0.15 -6.73 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.37 5.12 -53.42 -0.27 -18.65 16 10 C 0.18 3.51 2.77 -67.93 -0.19 3.33 16 11 C -0.12 -1.97 5.39 -26.73 -0.14 -2.11 16 12 C -0.12 -1.57 5.39 -26.73 -0.14 -1.72 16 13 C 0.14 2.02 2.45 -67.93 -0.17 1.85 16 14 N -0.70 -8.96 5.06 -54.73 -0.28 -9.24 16 15 C 0.57 7.87 7.77 -12.31 -0.10 7.77 16 16 O -0.53 -8.66 15.97 5.32 0.08 -8.58 16 17 C 0.09 1.06 6.74 -83.07 -0.56 0.50 16 18 C -0.10 -0.99 9.62 -39.09 -0.38 -1.37 16 19 C -0.08 -0.63 10.08 -39.22 -0.40 -1.03 16 20 C 0.03 0.27 6.51 -38.78 -0.25 0.01 16 21 C 0.26 2.70 7.55 -16.92 -0.13 2.58 16 22 N -0.44 -5.21 9.55 -9.70 -0.09 -5.30 16 23 O -0.29 -2.61 10.51 -32.31 -0.34 -2.95 16 24 C 0.03 0.10 7.25 37.39 0.27 0.37 16 25 C 0.02 0.06 7.26 37.39 0.27 0.33 16 26 O -0.30 -2.10 10.42 -31.68 -0.33 -2.43 16 27 C -0.12 -1.92 5.49 -26.73 -0.15 -2.07 16 28 C -0.13 -2.44 5.50 -26.73 -0.15 -2.59 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.38 10.32 7.80 -40.82 -0.32 10.00 16 31 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 37 H 0.41 4.66 7.92 -40.82 -0.32 4.33 16 38 H 0.16 1.38 7.63 -52.49 -0.40 0.98 16 39 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.13 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.13 0.04 8.14 -51.93 -0.42 -0.39 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -34.70 386.67 -9.04 -43.74 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.90 Total: 9.17 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.45 Total: -1.45 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.08 Total: -61.06 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.58 Total: -13.96 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.70 -9.04 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026521884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.260 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds