Wall clock time and date at job start Wed Apr 1 2020 04:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00247 * 2 1 4 4 H 1.48509 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47493 * 300.00401 * 3 2 1 6 6 H 1.48507 * 109.46893 * 60.00542 * 3 2 1 7 7 C 1.38813 * 119.99458 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00008 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00065 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46898 * 154.99940 * 10 9 7 12 12 C 1.52997 * 109.46972 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47282 * 299.99808 * 12 11 10 14 14 N 1.46499 * 109.47197 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99686 * 155.00589 * 14 13 12 16 16 O 1.21558 * 119.99929 * 359.97438 * 15 14 13 17 17 C 1.47883 * 120.00164 * 180.02562 * 15 14 13 18 18 C 1.39280 * 119.60970 * 179.97438 * 17 15 14 19 19 C 1.38534 * 119.12262 * 180.02562 * 18 17 15 20 20 C 1.38916 * 118.53468 * 359.97438 * 19 18 17 21 21 C 1.39725 * 119.43409 * 359.88606 * 20 19 18 22 22 N 1.31998 * 120.36328 * 0.20412 * 21 20 19 23 23 O 1.35984 * 120.44315 * 180.48319 * 21 20 19 24 24 C 1.43172 * 116.70190 * 342.34784 * 23 21 20 25 25 C 1.53456 * 108.31516 * 46.59020 * 24 23 21 26 26 O 1.35784 * 119.57608 * 179.72523 * 20 19 18 27 27 C 1.53004 * 109.46622 * 59.99790 * 13 12 11 28 28 C 1.52997 * 109.47464 * 300.00099 * 27 13 12 29 29 H 0.97004 * 119.99707 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00169 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47058 * 35.00045 * 10 9 7 32 32 H 1.08994 * 109.47495 * 60.00399 * 11 10 9 33 33 H 1.09003 * 109.47271 * 299.99830 * 11 10 9 34 34 H 1.09003 * 109.47824 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.47195 * 59.99975 * 12 11 10 36 36 H 1.08997 * 109.46726 * 300.00425 * 13 12 11 37 37 H 0.97000 * 120.00086 * 334.99902 * 14 13 12 38 38 H 1.07992 * 120.44168 * 0.08843 * 18 17 15 39 39 H 1.08002 * 120.73614 * 179.97438 * 19 18 17 40 40 H 1.08997 * 109.72769 * 286.86796 * 24 23 21 41 41 H 1.08996 * 109.70595 * 166.29521 * 24 23 21 42 42 H 1.09004 * 109.70919 * 180.43536 * 25 24 23 43 43 H 1.09005 * 109.71665 * 59.79857 * 25 24 23 44 44 H 1.09001 * 109.47028 * 60.00340 * 27 13 12 45 45 H 1.09001 * 109.46784 * 179.97438 * 27 13 12 46 46 H 1.08994 * 109.46859 * 300.00318 * 28 27 13 47 47 H 1.08998 * 109.47134 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.1806 -4.7521 0.6091 12 6 1.9457 -6.0770 0.6097 13 6 2.3100 -6.4563 -0.8271 14 7 3.0432 -7.7246 -0.8265 15 6 3.0351 -8.5081 -1.9230 16 8 2.4190 -8.1626 -2.9124 17 6 3.7746 -9.7887 -1.9223 18 6 3.7603 -10.5924 -3.0598 19 6 4.4561 -11.7902 -3.0478 20 6 5.1458 -12.1456 -1.8955 21 6 5.1214 -11.2916 -0.7899 22 7 4.4460 -10.1585 -0.8367 23 8 5.7973 -11.6145 0.3451 24 6 6.1837 -12.9848 0.4960 25 6 6.8095 -13.4574 -0.8231 26 8 5.8303 -13.3177 -1.8587 27 6 3.1873 -5.3609 -1.4367 28 6 2.4222 -4.0360 -1.4373 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 -0.0005 31 1 2.9686 -3.5507 0.5889 32 1 0.2699 -4.8584 0.0197 33 1 0.9214 -4.4822 1.6329 34 1 1.3206 -6.8575 1.0436 35 1 2.8562 -5.9706 1.1994 36 1 1.3995 -6.5627 -1.4168 37 1 3.5345 -8.0004 -0.0369 38 1 3.2148 -10.2853 -3.9398 39 1 4.4623 -12.4337 -3.9153 40 1 5.3073 -13.5912 0.7248 41 1 6.9127 -13.0745 1.3012 42 1 7.1056 -14.5028 -0.7357 43 1 7.6812 -12.8460 -1.0564 44 1 4.0978 -5.2544 -0.8470 45 1 3.4472 -5.6313 -2.4602 46 1 1.5117 -4.1425 -2.0270 47 1 3.0470 -3.2558 -1.8721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026521884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:05 Heat of formation + Delta-G solvation = -88.231785 kcal Electronic energy + Delta-G solvation = -29781.024182 eV Core-core repulsion = 25542.518290 eV Total energy + Delta-G solvation = -4238.505892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.66438 -41.25819 -39.81651 -38.90160 -38.50955 -36.40543 -34.73211 -33.46272 -32.66619 -32.20048 -31.69073 -30.10771 -28.85252 -26.45338 -25.69954 -25.20913 -23.68677 -23.25502 -22.26320 -21.61270 -20.99023 -20.01964 -19.19168 -19.04298 -18.80541 -18.05613 -17.24600 -16.95135 -16.83373 -16.22968 -16.10313 -15.91961 -15.59050 -15.54171 -15.41804 -15.31907 -15.02547 -14.78643 -14.53513 -14.43397 -14.02758 -13.83667 -13.45284 -13.16016 -13.08167 -12.86345 -12.73997 -12.50902 -12.43592 -12.29925 -12.16748 -12.09417 -12.02439 -11.69345 -11.48865 -11.36945 -11.19140 -10.84750 -10.72313 -10.52906 -10.10584 -9.45111 -8.97784 -7.92272 -5.20115 -0.56607 -0.00823 1.44364 1.47246 1.48160 1.58025 1.60675 1.90731 2.06926 2.57531 2.62918 2.87732 3.27800 3.40552 3.46542 3.73970 3.78082 3.86497 3.88692 3.91116 3.99376 4.05462 4.17790 4.29949 4.37536 4.40396 4.51377 4.53983 4.57379 4.59522 4.60231 4.65706 4.82857 4.88350 4.99911 5.10278 5.11771 5.13848 5.25786 5.28797 5.44274 5.48362 5.52759 5.56144 5.65255 5.96963 6.30715 6.36477 6.66692 7.10308 7.36115 8.13761 8.36592 9.31598 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.001807 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.194117 B =15493.902458 C =15844.482876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.738 5.738 10 C 0.171 3.829 11 C -0.111 4.111 12 C -0.107 4.107 13 C 0.150 3.850 14 N -0.694 5.694 15 C 0.573 3.427 16 O -0.563 6.563 17 C 0.067 3.933 18 C -0.102 4.102 19 C -0.076 4.076 20 C 0.038 3.962 21 C 0.250 3.750 22 N -0.462 5.462 23 O -0.313 6.313 24 C 0.017 3.983 25 C 0.012 3.988 26 O -0.304 6.304 27 C -0.112 4.112 28 C -0.121 4.121 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.417 0.583 38 H 0.167 0.833 39 H 0.186 0.814 40 H 0.089 0.911 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.043 0.957 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.394 -36.016 -0.615 39.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.063 3.937 11 C -0.150 4.150 12 C -0.145 4.145 13 C 0.046 3.954 14 N -0.344 5.344 15 C 0.358 3.642 16 O -0.441 6.441 17 C -0.070 4.070 18 C -0.123 4.123 19 C -0.101 4.101 20 C -0.011 4.011 21 C 0.066 3.934 22 N -0.185 5.185 23 O -0.223 6.223 24 C -0.058 4.058 25 C -0.062 4.062 26 O -0.217 6.217 27 C -0.152 4.152 28 C -0.162 4.162 29 H 0.058 0.942 30 H 0.204 0.796 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.255 0.745 38 H 0.184 0.816 39 H 0.203 0.797 40 H 0.107 0.893 41 H 0.181 0.819 42 H 0.184 0.816 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.183 -35.181 -0.495 38.321 hybrid contribution 0.096 0.712 -0.363 0.805 sum 15.280 -34.469 -0.858 37.714 Atomic orbital electron populations 1.69831 1.06555 1.25796 1.60008 1.25548 0.96394 1.01021 1.04220 0.85104 0.78258 0.80057 0.76563 1.19071 1.22332 1.22009 1.19664 0.91382 0.85316 1.40244 0.90744 1.42665 1.05462 1.01070 1.88555 1.20493 0.94494 0.85050 0.93644 1.21624 0.98417 0.93830 1.01145 1.21653 1.01633 0.96841 0.94359 1.20984 0.94617 0.81758 0.98019 1.45880 1.51698 1.20422 1.16385 1.17937 0.79993 0.83030 0.83200 1.90803 1.45029 1.73972 1.34337 1.20632 0.99240 0.96314 0.90843 1.22076 0.98165 0.92959 0.99106 1.21235 0.95671 0.96244 0.96940 1.20050 0.97904 0.88817 0.94345 1.19447 0.95381 0.91925 0.86628 1.66467 1.07472 1.16439 1.28149 1.86242 1.69039 1.30848 1.36125 1.24198 1.02872 0.78358 1.00335 1.24152 0.89492 1.07477 0.85128 1.86280 1.50931 1.30989 1.53463 1.21769 0.98845 0.93956 1.00597 1.22009 0.99133 0.95640 0.99402 0.94166 0.79650 0.93608 0.92478 0.91393 0.89482 0.89833 0.90768 0.74504 0.81569 0.79715 0.89315 0.81937 0.81641 0.89440 0.90983 0.92955 0.93804 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 3 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 6 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 7 C -0.23 -13.28 9.93 84.03 0.83 -12.44 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -38.13 5.12 -322.93 -1.65 -39.79 16 10 C 0.17 6.86 2.77 44.99 0.12 6.98 16 11 C -0.11 -3.60 5.39 30.59 0.16 -3.44 16 12 C -0.11 -2.63 5.39 30.60 0.16 -2.47 16 13 C 0.15 4.14 2.45 44.99 0.11 4.25 16 14 N -0.69 -17.20 5.06 -445.36 -2.26 -19.46 16 15 C 0.57 15.72 7.77 86.80 0.67 16.39 16 16 O -0.56 -18.75 15.97 -3.90 -0.06 -18.81 16 17 C 0.07 1.55 6.74 41.79 0.28 1.83 16 18 C -0.10 -1.85 9.62 22.59 0.22 -1.64 16 19 C -0.08 -1.04 10.08 22.50 0.23 -0.82 16 20 C 0.04 0.59 6.51 22.79 0.15 0.74 16 21 C 0.25 4.85 7.55 85.03 0.64 5.49 16 22 N -0.46 -10.58 9.55 -297.44 -2.84 -13.42 16 23 O -0.31 -5.12 10.51 -81.30 -0.85 -5.97 16 24 C 0.02 0.09 7.25 72.14 0.52 0.61 16 25 C 0.01 0.04 7.26 72.14 0.52 0.57 16 26 O -0.30 -3.42 10.42 -79.06 -0.82 -4.24 16 27 C -0.11 -3.46 5.49 30.59 0.17 -3.29 16 28 C -0.12 -4.59 5.50 30.59 0.17 -4.42 16 29 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.37 20.64 7.80 -92.71 -0.72 19.91 16 31 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 2.32 7.58 -2.39 -0.02 2.31 16 37 H 0.42 9.00 7.92 -92.71 -0.73 8.26 16 38 H 0.17 2.76 7.63 -2.91 -0.02 2.74 16 39 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.16 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.17 -0.61 8.14 -2.39 -0.02 -0.63 16 43 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -76.79 386.67 -1.19 -77.98 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.45 Total: 30.76 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.44 Total: 4.12 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -6.47 Total: -133.16 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -1.74 Total: -29.02 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -76.79 -1.19 -77.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026521884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.253 kcal (2) G-P(sol) polarization free energy of solvation -76.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds