Wall clock time and date at job start Wed Apr 1 2020 04:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48501 * 109.46970 * 274.99621 * 3 2 1 5 5 H 1.48503 * 109.47070 * 34.99353 * 3 2 1 6 6 H 1.48503 * 109.47451 * 154.99588 * 3 2 1 7 7 C 1.38819 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99925 * 185.17709 * 7 2 1 9 9 N 1.36937 * 119.99832 * 4.91035 * 7 2 1 10 10 C 1.47860 * 126.94474 * 354.76942 * 9 7 2 11 11 C 1.56000 * 105.11475 * 181.90663 * 10 9 7 12 12 H 1.09002 * 116.82308 * 159.39995 * 11 10 9 13 13 C 1.57089 * 99.48413 * 33.13429 * 11 10 9 14 14 C 1.49288 * 126.94131 * 175.08319 * 9 7 2 15 15 H 1.09003 * 116.15483 * 15.82024 * 14 9 7 16 16 C 1.56024 * 104.09206 * 246.67806 * 14 9 7 17 17 N 1.47873 * 105.10146 * 288.76638 * 16 14 9 18 18 C 1.34771 * 126.94299 * 181.97976 * 17 16 14 19 19 O 1.21285 * 120.00220 * 180.02562 * 18 17 16 20 20 C 1.50705 * 120.00251 * 0.02889 * 18 17 16 21 21 H 1.09000 * 109.87399 * 357.22853 * 20 18 17 22 22 C 1.54324 * 109.88736 * 236.03083 * 20 18 17 23 23 C 1.55133 * 103.01541 * 218.30847 * 22 20 18 24 24 C 1.54907 * 101.65919 * 35.65627 * 23 22 20 25 25 N 1.47440 * 109.88797 * 118.26140 * 20 18 17 26 26 C 1.46901 * 111.00142 * 356.14635 * 25 20 18 27 27 C 1.52996 * 109.47000 * 179.00659 * 26 25 20 28 28 F 1.39908 * 109.47096 * 60.00187 * 27 26 25 29 29 F 1.39897 * 109.47280 * 180.02562 * 27 26 25 30 30 F 1.39904 * 109.47513 * 300.00505 * 27 26 25 31 31 H 0.96995 * 120.00272 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.31547 * 300.92926 * 10 9 7 33 33 H 1.09006 * 110.32125 * 63.11724 * 10 9 7 34 34 H 1.09001 * 112.36681 * 191.52893 * 13 11 10 35 35 H 1.08998 * 112.36947 * 64.08770 * 13 11 10 36 36 H 1.08997 * 110.31740 * 47.67265 * 16 14 9 37 37 H 1.08997 * 110.31470 * 169.76096 * 16 14 9 38 38 H 1.08998 * 110.70139 * 336.69369 * 22 20 18 39 39 H 1.08998 * 110.70300 * 99.92610 * 22 20 18 40 40 H 1.08998 * 110.99136 * 277.55760 * 23 22 20 41 41 H 1.09005 * 110.99095 * 153.74937 * 23 22 20 42 42 H 1.08995 * 110.37613 * 204.10091 * 24 23 22 43 43 H 1.08999 * 110.37458 * 81.75502 * 24 23 22 44 44 H 1.08993 * 109.47331 * 299.01268 * 26 25 20 45 45 H 1.09003 * 109.46903 * 59.01179 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5966 1.4120 0.5918 7 6 2.0103 -1.2022 0.0005 8 1 3.0870 -1.2041 0.0849 9 7 1.3293 -2.3860 -0.1004 10 6 -0.1379 -2.5693 -0.1093 11 6 -0.3546 -4.1118 -0.1939 12 1 -1.3243 -4.4907 0.1288 13 6 0.8951 -4.5942 0.6267 14 6 1.9183 -3.7527 -0.2174 15 1 2.9729 -3.8453 0.0422 16 6 1.5174 -4.2178 -1.6517 17 7 0.0614 -4.4670 -1.5830 18 6 -0.7301 -4.9222 -2.5743 19 8 -1.9164 -5.0813 -2.3784 20 6 -0.1412 -5.2337 -3.9261 21 1 0.9204 -4.9865 -3.9336 22 6 -0.8787 -4.4301 -5.0178 23 6 -0.9588 -5.4348 -6.1971 24 6 -1.1602 -6.7775 -5.4513 25 7 -0.3256 -6.6632 -4.2362 26 6 -0.9411 -7.3720 -3.1062 27 6 -1.1387 -8.8439 -3.4741 28 9 0.1012 -9.4218 -3.7675 29 9 -1.7253 -9.5188 -2.3982 30 9 -1.9731 -8.9370 -4.5932 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5742 -2.1739 0.8081 33 1 -0.5754 -2.0793 -0.9792 34 1 1.0636 -5.6671 0.5335 35 1 0.8555 -4.2755 1.6683 36 1 1.7333 -3.4341 -2.3778 37 1 2.0475 -5.1331 -1.9148 38 1 -1.8770 -4.1498 -4.6817 39 1 -0.3045 -3.5481 -5.3012 40 1 -0.0307 -5.4409 -6.7686 41 1 -1.8104 -5.2142 -6.8408 42 1 -0.8202 -7.6091 -6.0684 43 1 -2.2081 -6.9081 -5.1810 44 1 -0.2910 -7.2995 -2.2343 45 1 -1.9071 -6.9218 -2.8776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032801817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:56 Heat of formation + Delta-G solvation = -109.328672 kcal Electronic energy + Delta-G solvation = -33010.869186 eV Core-core repulsion = 28229.591724 eV Total energy + Delta-G solvation = -4781.277462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.18584 -47.74516 -47.59904 -40.84728 -39.31209 -37.10610 -33.76958 -33.03413 -31.79833 -29.86594 -28.84572 -28.51189 -28.06054 -25.30593 -23.93818 -23.39897 -22.31944 -21.53146 -20.18808 -19.92818 -18.72291 -18.66002 -18.31802 -17.94915 -17.00257 -16.50643 -16.18160 -15.65130 -15.40818 -14.83876 -14.74272 -14.69176 -14.51508 -14.09244 -14.06628 -13.92247 -13.79510 -13.70448 -13.54797 -13.31397 -12.81941 -12.60363 -12.34945 -12.10752 -11.97935 -11.74475 -11.67971 -11.44813 -11.39437 -11.23099 -11.06516 -10.95382 -10.91508 -10.80919 -10.68498 -10.33816 -10.13902 -9.92168 -9.70973 -8.82589 -8.61399 -8.11769 -7.00537 -5.85002 -3.19328 2.53627 2.66387 3.17122 3.32564 3.37809 3.40457 3.42518 3.72415 3.97722 4.27326 4.35522 4.38934 4.50265 4.64560 4.92425 5.01667 5.06156 5.08808 5.24229 5.24977 5.31714 5.36134 5.48502 5.53543 5.58243 5.65780 5.71091 5.73051 5.84192 5.86794 6.03947 6.06531 6.17551 6.29508 6.36395 6.40403 6.47554 6.50609 6.56501 7.30979 7.40686 7.63843 7.88975 8.01981 8.30446 9.02441 9.63629 10.32121 11.27420 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.003178 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.195976 B = 8808.001539 C = 9489.831925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.175 3.825 11 C 0.095 3.905 12 H 0.114 0.886 13 C -0.152 4.152 14 C 0.142 3.858 15 H 0.108 0.892 16 C 0.080 3.920 17 N -0.595 5.595 18 C 0.513 3.487 19 O -0.555 6.555 20 C 0.061 3.939 21 H 0.110 0.890 22 C -0.128 4.128 23 C -0.125 4.125 24 C 0.027 3.973 25 N -0.498 5.498 26 C -0.020 4.020 27 C 0.458 3.542 28 F -0.177 7.177 29 F -0.183 7.183 30 F -0.184 7.184 31 H 0.254 0.746 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.115 0.885 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 -15.173 -8.607 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.050 3.950 11 C -0.008 4.008 12 H 0.132 0.868 13 C -0.191 4.191 14 C 0.033 3.967 15 H 0.126 0.874 16 C -0.046 4.046 17 N -0.327 5.327 18 C 0.301 3.699 19 O -0.435 6.435 20 C -0.050 4.050 21 H 0.128 0.872 22 C -0.167 4.167 23 C -0.163 4.163 24 C -0.100 4.100 25 N -0.224 5.224 26 C -0.150 4.150 27 C 0.403 3.597 28 F -0.158 7.158 29 F -0.164 7.164 30 F -0.166 7.166 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.133 0.867 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.483 -15.241 -8.635 17.524 hybrid contribution -0.317 1.080 0.104 1.130 sum -0.800 -14.162 -8.531 16.552 Atomic orbital electron populations 1.69916 1.05005 1.25403 1.56099 1.24830 0.95658 0.97752 1.01806 0.86110 0.78669 0.83478 0.77528 1.21591 1.21734 1.20531 1.19061 0.90810 0.82077 1.44255 0.90072 1.45246 1.01236 1.00004 1.85615 1.21899 0.84851 0.86930 1.01289 1.24405 0.97833 0.98956 0.79561 0.86842 1.24174 0.96651 0.98582 0.99725 1.23188 0.96633 0.86456 0.90452 0.87423 1.23401 0.79466 0.99382 1.02311 1.49322 1.09812 1.61713 1.11872 1.20453 0.86254 0.77604 0.85597 1.90611 1.15357 1.54774 1.82801 1.22607 1.02271 0.87552 0.92551 0.87204 1.22762 1.01760 0.98411 0.93748 1.22709 1.02795 0.93593 0.97182 1.23504 0.96610 0.98990 0.90870 1.64098 1.45876 1.09601 1.02775 1.24039 1.05699 0.88379 0.96836 1.20495 0.73892 0.90993 0.74308 1.93196 1.42510 1.86743 1.93360 1.93185 1.84616 1.82665 1.55977 1.93157 1.72730 1.96885 1.53784 0.93544 0.92897 0.93158 0.91600 0.89658 0.90754 0.92319 0.89883 0.89633 0.90252 0.90158 0.89219 0.91891 0.86710 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.97 10.59 55.49 0.59 -25.39 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.11 29.56 -169.99 -5.02 16.08 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.23 -6.00 10.37 -15.06 -0.16 -6.15 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -13.64 3.02 -156.35 -0.47 -14.11 16 10 C 0.18 4.01 4.77 -1.69 -0.01 4.00 16 11 C 0.09 1.71 5.24 -62.56 -0.33 1.39 16 12 H 0.11 2.00 8.06 -51.93 -0.42 1.58 16 13 C -0.15 -2.39 6.80 -22.30 -0.15 -2.55 16 14 C 0.14 2.45 5.53 -62.55 -0.35 2.11 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 16 C 0.08 1.25 5.30 -1.67 -0.01 1.24 16 17 N -0.60 -10.03 2.96 -156.78 -0.46 -10.49 16 18 C 0.51 8.40 5.05 -10.99 -0.06 8.35 16 19 O -0.56 -10.40 14.28 5.55 0.08 -10.32 16 20 C 0.06 0.81 3.68 -67.87 -0.25 0.56 16 21 H 0.11 1.40 6.83 -51.93 -0.35 1.04 16 22 C -0.13 -1.56 6.43 -24.91 -0.16 -1.72 16 23 C -0.12 -1.21 7.08 -24.60 -0.17 -1.38 16 24 C 0.03 0.30 4.93 -2.29 -0.01 0.29 16 25 N -0.50 -6.17 5.17 -224.72 -1.16 -7.34 16 26 C -0.02 -0.26 3.83 -3.83 -0.01 -0.27 16 27 C 0.46 5.58 3.17 37.16 0.12 5.69 16 28 F -0.18 -2.22 17.24 2.25 0.04 -2.18 16 29 F -0.18 -2.31 17.32 2.25 0.04 -2.27 16 30 F -0.18 -2.20 13.87 2.25 0.03 -2.17 16 31 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.05 1.35 7.61 -51.93 -0.40 0.95 16 33 H 0.05 1.33 7.55 -51.93 -0.39 0.94 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 38 H 0.08 1.16 7.46 -51.93 -0.39 0.77 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.91 7.65 -51.93 -0.40 0.51 16 43 H 0.06 0.73 6.75 -51.93 -0.35 0.38 16 44 H 0.11 1.48 7.57 -51.93 -0.39 1.09 16 45 H 0.12 1.73 5.51 -51.93 -0.29 1.45 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -29.23 359.21 -8.87 -38.11 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.30 Total: 3.30 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: -1.64 Total: 11.36 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -1.51 Total: -57.32 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.11 Total: -6.62 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.23 -8.87 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032801817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.220 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds