Wall clock time and date at job start Wed Apr 1 2020 04:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48501 * 109.46970 * 274.99621 * 3 2 1 5 5 H 1.48503 * 109.47070 * 34.99353 * 3 2 1 6 6 H 1.48503 * 109.47451 * 154.99588 * 3 2 1 7 7 C 1.38819 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99925 * 185.17709 * 7 2 1 9 9 N 1.36937 * 119.99832 * 4.91035 * 7 2 1 10 10 C 1.47860 * 126.94474 * 354.76942 * 9 7 2 11 11 C 1.56000 * 105.11475 * 181.90663 * 10 9 7 12 12 H 1.09002 * 116.82308 * 159.39995 * 11 10 9 13 13 C 1.57089 * 99.48413 * 33.13429 * 11 10 9 14 14 C 1.49288 * 126.94131 * 175.08319 * 9 7 2 15 15 H 1.09003 * 116.15483 * 15.82024 * 14 9 7 16 16 C 1.56024 * 104.09206 * 246.67806 * 14 9 7 17 17 N 1.47873 * 105.10146 * 288.76638 * 16 14 9 18 18 C 1.34771 * 126.94299 * 181.97976 * 17 16 14 19 19 O 1.21285 * 120.00220 * 180.02562 * 18 17 16 20 20 C 1.50705 * 120.00251 * 0.02889 * 18 17 16 21 21 H 1.09000 * 109.87399 * 357.22853 * 20 18 17 22 22 C 1.54324 * 109.88736 * 236.03083 * 20 18 17 23 23 C 1.55133 * 103.01541 * 218.30847 * 22 20 18 24 24 C 1.54907 * 101.65919 * 35.65627 * 23 22 20 25 25 N 1.47440 * 109.88797 * 118.26140 * 20 18 17 26 26 C 1.46901 * 111.00142 * 356.14635 * 25 20 18 27 27 C 1.52996 * 109.47000 * 179.00659 * 26 25 20 28 28 F 1.39908 * 109.47096 * 60.00187 * 27 26 25 29 29 F 1.39897 * 109.47280 * 180.02562 * 27 26 25 30 30 F 1.39904 * 109.47513 * 300.00505 * 27 26 25 31 31 H 0.96995 * 120.00272 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.31547 * 300.92926 * 10 9 7 33 33 H 1.09006 * 110.32125 * 63.11724 * 10 9 7 34 34 H 1.09001 * 112.36681 * 191.52893 * 13 11 10 35 35 H 1.08998 * 112.36947 * 64.08770 * 13 11 10 36 36 H 1.08997 * 110.31740 * 47.67265 * 16 14 9 37 37 H 1.08997 * 110.31470 * 169.76096 * 16 14 9 38 38 H 1.08998 * 110.70139 * 336.69369 * 22 20 18 39 39 H 1.08998 * 110.70300 * 99.92610 * 22 20 18 40 40 H 1.08998 * 110.99136 * 277.55760 * 23 22 20 41 41 H 1.09005 * 110.99095 * 153.74937 * 23 22 20 42 42 H 1.08995 * 110.37613 * 204.10091 * 24 23 22 43 43 H 1.08999 * 110.37458 * 81.75502 * 24 23 22 44 44 H 1.08993 * 109.47331 * 299.01268 * 26 25 20 45 45 H 1.09003 * 109.46903 * 59.01179 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5966 1.4120 0.5918 7 6 2.0103 -1.2022 0.0005 8 1 3.0870 -1.2041 0.0849 9 7 1.3293 -2.3860 -0.1004 10 6 -0.1379 -2.5693 -0.1093 11 6 -0.3546 -4.1118 -0.1939 12 1 -1.3243 -4.4907 0.1288 13 6 0.8951 -4.5942 0.6267 14 6 1.9183 -3.7527 -0.2174 15 1 2.9729 -3.8453 0.0422 16 6 1.5174 -4.2178 -1.6517 17 7 0.0614 -4.4670 -1.5830 18 6 -0.7301 -4.9222 -2.5743 19 8 -1.9164 -5.0813 -2.3784 20 6 -0.1412 -5.2337 -3.9261 21 1 0.9204 -4.9865 -3.9336 22 6 -0.8787 -4.4301 -5.0178 23 6 -0.9588 -5.4348 -6.1971 24 6 -1.1602 -6.7775 -5.4513 25 7 -0.3256 -6.6632 -4.2362 26 6 -0.9411 -7.3720 -3.1062 27 6 -1.1387 -8.8439 -3.4741 28 9 0.1012 -9.4218 -3.7675 29 9 -1.7253 -9.5188 -2.3982 30 9 -1.9731 -8.9370 -4.5932 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5742 -2.1739 0.8081 33 1 -0.5754 -2.0793 -0.9792 34 1 1.0636 -5.6671 0.5335 35 1 0.8555 -4.2755 1.6683 36 1 1.7333 -3.4341 -2.3778 37 1 2.0475 -5.1331 -1.9148 38 1 -1.8770 -4.1498 -4.6817 39 1 -0.3045 -3.5481 -5.3012 40 1 -0.0307 -5.4409 -6.7686 41 1 -1.8104 -5.2142 -6.8408 42 1 -0.8202 -7.6091 -6.0684 43 1 -2.2081 -6.9081 -5.1810 44 1 -0.2910 -7.2995 -2.2343 45 1 -1.9071 -6.9218 -2.8776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032801817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:55 Heat of formation + Delta-G solvation = -127.821616 kcal Electronic energy + Delta-G solvation = -33011.671100 eV Core-core repulsion = 28229.591724 eV Total energy + Delta-G solvation = -4782.079376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.16188 -48.71878 -48.57633 -42.10570 -40.62935 -38.35299 -35.49914 -34.00761 -33.42575 -31.25985 -30.30214 -29.92289 -29.02592 -26.98727 -25.45527 -24.42439 -23.62478 -22.41694 -21.53986 -21.42237 -20.01583 -19.64279 -19.47097 -19.17284 -18.42924 -17.86350 -17.52878 -16.81571 -16.64368 -16.16712 -16.03477 -15.74512 -15.71655 -15.51237 -15.10379 -15.07487 -14.90631 -14.83149 -14.73860 -14.54100 -13.91124 -13.81937 -13.72391 -13.38825 -13.32128 -13.31370 -13.06864 -12.82935 -12.73395 -12.60166 -12.45240 -12.23092 -12.14353 -12.08766 -12.03023 -11.89681 -11.74824 -11.53779 -11.17345 -10.74214 -9.81340 -9.45631 -8.90185 -7.85576 -5.20331 1.32076 1.47915 1.48392 1.57414 1.61823 1.88502 2.41462 2.48671 2.74384 2.98832 3.21912 3.32689 3.33365 3.42958 3.60430 3.62375 3.79756 3.87429 3.99948 4.02616 4.11641 4.18943 4.26336 4.31190 4.44438 4.57592 4.66306 4.68131 4.77192 4.83603 4.91712 4.93228 5.00404 5.00992 5.13653 5.18892 5.23301 5.38882 5.44190 5.52099 5.53665 5.65499 6.09917 6.56563 6.99028 7.03234 7.71265 8.41465 9.25930 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.003178 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.195976 B = 8808.001539 C = 9489.831925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.068 4.068 3 Si 0.973 3.027 4 H -0.292 1.292 5 H -0.303 1.303 6 H -0.261 1.261 7 C -0.229 4.229 8 H 0.096 0.904 9 N -0.616 5.616 10 C 0.189 3.811 11 C 0.100 3.900 12 H 0.115 0.885 13 C -0.130 4.130 14 C 0.136 3.864 15 H 0.136 0.864 16 C 0.088 3.912 17 N -0.599 5.599 18 C 0.510 3.490 19 O -0.583 6.583 20 C 0.066 3.934 21 H 0.123 0.877 22 C -0.131 4.131 23 C -0.113 4.113 24 C 0.023 3.977 25 N -0.493 5.493 26 C -0.015 4.015 27 C 0.465 3.535 28 F -0.176 7.176 29 F -0.185 7.185 30 F -0.182 7.182 31 H 0.243 0.757 32 H 0.013 0.987 33 H 0.001 0.999 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.053 0.947 44 H 0.117 0.883 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.103 -17.294 -9.746 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.219 1.219 5 H -0.231 1.231 6 H -0.186 1.186 7 C -0.358 4.358 8 H 0.113 0.887 9 N -0.341 5.341 10 C 0.063 3.937 11 C -0.004 4.004 12 H 0.132 0.868 13 C -0.169 4.169 14 C 0.029 3.971 15 H 0.153 0.847 16 C -0.036 4.036 17 N -0.331 5.331 18 C 0.299 3.701 19 O -0.465 6.465 20 C -0.044 4.044 21 H 0.141 0.859 22 C -0.170 4.170 23 C -0.150 4.150 24 C -0.104 4.104 25 N -0.218 5.218 26 C -0.145 4.145 27 C 0.410 3.590 28 F -0.157 7.157 29 F -0.167 7.167 30 F -0.164 7.164 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.019 0.981 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.071 0.929 44 H 0.135 0.865 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.923 -17.414 -9.788 20.069 hybrid contribution -1.071 1.683 0.454 2.046 sum 0.852 -15.732 -9.334 18.312 Atomic orbital electron populations 1.70155 1.06608 1.25097 1.58649 1.25623 0.96307 1.01051 1.03080 0.85122 0.78091 0.79548 0.76970 1.21889 1.23055 1.18555 1.19539 0.91604 0.83150 1.41526 0.88652 1.45493 1.01394 1.01737 1.85452 1.21484 0.85053 0.90075 0.97133 1.24177 0.99383 0.95293 0.81521 0.86764 1.24072 0.93833 1.00352 0.98649 1.23607 0.98236 0.83434 0.91802 0.84693 1.23290 0.78907 1.00848 1.00542 1.49384 1.10504 1.61808 1.11424 1.21072 0.85858 0.76769 0.86381 1.90605 1.16748 1.55816 1.83333 1.22665 1.02721 0.88409 0.90600 0.85898 1.22780 1.00321 0.99361 0.94549 1.22714 1.04425 0.91615 0.96280 1.23608 0.95966 1.00241 0.90541 1.64210 1.46013 1.08652 1.02950 1.23906 1.04670 0.88710 0.97186 1.20310 0.73867 0.90527 0.74249 1.93198 1.42466 1.86689 1.93346 1.93182 1.84674 1.82675 1.56168 1.93164 1.72691 1.96857 1.53649 0.94773 0.96916 0.98111 0.87856 0.90167 0.92400 0.87917 0.92361 0.88947 0.88407 0.88692 0.87843 0.92860 0.86539 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.97 10.59 21.65 0.23 -56.74 16 2 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 3 Si 0.97 44.16 29.56 68.60 2.03 46.19 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.23 -11.74 10.37 84.04 0.87 -10.87 16 8 H 0.10 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.62 -28.21 3.02 -648.57 -1.96 -30.17 16 10 C 0.19 9.02 4.77 87.16 0.42 9.43 16 11 C 0.10 3.59 5.24 46.93 0.25 3.84 16 12 H 0.11 4.09 8.06 -2.39 -0.02 4.07 16 13 C -0.13 -3.77 6.80 33.47 0.23 -3.55 16 14 C 0.14 4.35 5.53 46.93 0.26 4.61 16 15 H 0.14 3.62 8.14 -2.39 -0.02 3.60 16 16 C 0.09 2.53 5.30 87.16 0.46 2.99 16 17 N -0.60 -19.55 2.96 -768.33 -2.27 -21.82 16 18 C 0.51 16.38 5.05 87.66 0.44 16.82 16 19 O -0.58 -22.16 14.28 -3.04 -0.04 -22.21 16 20 C 0.07 1.65 3.68 44.52 0.16 1.81 16 21 H 0.12 2.76 6.83 -2.39 -0.02 2.74 16 22 C -0.13 -3.04 6.43 31.77 0.20 -2.84 16 23 C -0.11 -1.90 7.08 31.98 0.23 -1.67 16 24 C 0.02 0.46 4.93 86.77 0.43 0.88 16 25 N -0.49 -11.09 5.17 -864.88 -4.47 -15.56 16 26 C -0.02 -0.36 3.83 86.30 0.33 -0.03 16 27 C 0.47 10.46 3.17 71.98 0.23 10.69 16 28 F -0.18 -3.97 17.24 44.97 0.78 -3.19 16 29 F -0.19 -4.39 17.32 44.97 0.78 -3.61 16 30 F -0.18 -4.04 13.87 44.97 0.62 -3.41 16 31 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.01 0.69 7.61 -2.39 -0.02 0.68 16 33 H 0.00 0.04 7.55 -2.38 -0.02 0.02 16 34 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 2.14 8.11 -2.39 -0.02 2.12 16 38 H 0.06 1.64 7.46 -2.39 -0.02 1.63 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.10 1.78 7.65 -2.39 -0.02 1.76 16 43 H 0.05 1.16 6.75 -2.39 -0.02 1.15 16 44 H 0.12 2.75 7.57 -2.39 -0.02 2.73 16 45 H 0.10 2.85 5.51 -2.39 -0.01 2.84 16 Total: -1.00 -66.91 359.21 1.68 -65.24 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.02 Total: 16.41 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: 4.97 Total: 28.88 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -8.47 Total: -124.29 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.04 Total: -22.21 kcal Atomic # 9 Polarization: -12.40 SS G_CDS: 2.18 Total: -10.22 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -66.91 1.68 -65.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032801817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.585 kcal (2) G-P(sol) polarization free energy of solvation -66.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds