Wall clock time and date at job start Wed Apr 1 2020 05:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47419 * 89.99659 * 3 2 1 5 5 H 1.48497 * 109.46920 * 210.00135 * 3 2 1 6 6 H 1.48506 * 109.47076 * 329.99708 * 3 2 1 7 7 C 1.38817 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99543 * 171.62851 * 7 2 1 9 9 N 1.36933 * 119.99939 * 351.63272 * 7 2 1 10 10 C 1.48293 * 128.21290 * 344.80809 * 9 7 2 11 11 H 1.09005 * 112.20618 * 343.85960 * 10 9 7 12 12 C 1.54602 * 104.26381 * 221.59972 * 10 9 7 13 13 C 1.54821 * 104.65386 * 334.74523 * 12 10 9 14 14 C 1.48301 * 128.20937 * 164.49214 * 9 7 2 15 15 H 1.08997 * 112.20665 * 16.13963 * 14 9 7 16 16 C 1.53157 * 107.55682 * 252.69415 * 14 9 7 17 17 C 1.53152 * 108.90792 * 296.11136 * 16 14 9 18 18 H 1.08997 * 109.39349 * 173.84705 * 17 16 14 19 19 C 1.53004 * 109.43478 * 293.73573 * 17 16 14 20 20 N 1.46493 * 109.46874 * 180.18427 * 19 17 16 21 21 C 1.34776 * 120.00062 * 180.02562 * 20 19 17 22 22 O 1.21614 * 119.99790 * 359.97438 * 21 20 19 23 23 C 1.47295 * 120.00034 * 180.02562 * 21 20 19 24 24 C 1.36571 * 125.80057 * 179.71673 * 23 21 20 25 25 C 1.40060 * 106.92278 * 179.84920 * 24 23 21 26 26 C 1.36572 * 106.92492 * 0.40908 * 25 24 23 27 27 C 1.47298 * 125.80345 * 179.74706 * 26 25 24 28 28 N 1.34781 * 119.99532 * 179.97438 * 27 26 25 29 29 O 1.21612 * 120.00320 * 359.97324 * 27 26 25 30 30 O 1.34542 * 108.38933 * 359.74555 * 26 25 24 31 31 C 1.53146 * 109.68881 * 53.80509 * 17 16 14 32 32 H 0.96999 * 119.99411 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.38351 * 93.68050 * 12 10 9 34 34 H 1.09001 * 110.38567 * 216.04107 * 12 10 9 35 35 H 1.08995 * 110.33754 * 241.26351 * 13 12 10 36 36 H 1.09003 * 110.52611 * 118.83168 * 13 12 10 37 37 H 1.08999 * 109.62458 * 176.24187 * 16 14 9 38 38 H 1.08992 * 109.57944 * 55.95971 * 16 14 9 39 39 H 1.09000 * 109.47249 * 300.18553 * 19 17 16 40 40 H 1.08995 * 109.47077 * 60.18284 * 19 17 16 41 41 H 0.97005 * 120.00375 * 0.02562 * 20 19 17 42 42 H 1.08004 * 126.54396 * 359.97438 * 24 23 21 43 43 H 1.08003 * 126.53899 * 180.13030 * 25 24 23 44 44 H 0.96991 * 120.00348 * 359.97438 * 28 27 26 45 45 H 0.97004 * 119.99415 * 180.02562 * 28 27 26 46 46 H 1.09001 * 109.56536 * 186.28933 * 31 17 16 47 47 H 1.08994 * 109.66835 * 65.98298 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4400 -0.7001 6 1 1.4478 2.6526 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0816 -1.2073 -0.1356 9 7 1.3365 -2.3817 0.1736 10 6 -0.0450 -2.5841 0.6732 11 1 -0.4352 -1.6990 1.1757 12 6 0.0657 -3.8048 1.6155 13 6 1.3001 -4.5854 1.1018 14 6 1.8130 -3.7591 -0.1001 15 1 2.8963 -3.8058 -0.2109 16 6 1.0892 -4.2577 -1.3544 17 6 -0.4116 -4.3419 -1.0608 18 1 -0.9463 -4.5902 -1.9776 19 6 -0.6653 -5.4278 -0.0133 20 7 -2.1011 -5.5120 0.2648 21 6 -2.5625 -6.4052 1.1624 22 8 -1.7868 -7.1417 1.7411 23 6 -4.0062 -6.4902 1.4416 24 6 -4.6008 -7.3509 2.3197 25 6 -5.9765 -7.0918 2.2762 26 6 -6.1639 -6.0903 1.3667 27 6 -7.4594 -5.4976 0.9923 28 7 -7.5089 -4.5095 0.0770 29 8 -8.4841 -5.8997 1.5091 30 8 -4.9641 -5.7373 0.8708 31 6 -0.9097 -2.9947 -0.5294 32 1 -0.4849 0.8401 -0.0004 33 1 0.2210 -3.4778 2.6437 34 1 -0.8297 -4.4223 1.5438 35 1 1.0087 -5.5848 0.7786 36 1 2.0649 -4.6438 1.8763 37 1 1.4641 -5.2446 -1.6254 38 1 1.2621 -3.5631 -2.1763 39 1 -0.3116 -6.3870 -0.3912 40 1 -0.1315 -5.1796 0.9040 41 1 -2.7199 -4.9248 -0.1970 42 1 -4.1046 -8.0891 2.9324 43 1 -6.7435 -7.5919 2.8490 44 1 -6.6916 -4.1886 -0.3349 45 1 -8.3620 -4.1189 -0.1693 46 1 -1.9497 -3.0878 -0.2165 47 1 -0.8298 -2.2396 -1.3113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048544025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:38 Heat of formation + Delta-G solvation = 41.700040 kcal Electronic energy + Delta-G solvation = -31596.719771 eV Core-core repulsion = 27363.848146 eV Total energy + Delta-G solvation = -4232.871625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.95181 -42.70470 -40.47111 -40.04312 -36.31454 -35.03289 -34.70923 -34.10967 -32.92994 -32.17593 -31.70916 -31.17612 -28.38995 -26.12052 -24.98340 -24.78978 -23.23599 -22.30577 -22.09680 -21.42725 -21.02780 -20.45839 -19.77781 -18.92076 -18.58907 -18.00019 -17.77197 -17.60095 -16.68519 -16.60835 -15.99717 -15.93392 -15.60617 -15.38679 -14.96389 -14.53123 -14.50698 -14.32735 -14.24307 -14.17113 -14.14242 -13.68536 -13.28255 -13.11172 -12.99364 -12.93694 -12.64217 -12.41382 -12.32688 -11.97754 -11.85917 -11.56843 -11.24917 -11.23639 -11.18587 -11.03516 -10.98428 -10.91594 -10.78935 -10.47452 -9.99703 -9.48832 -8.69044 -7.79731 -5.13520 -0.51790 0.78924 1.18137 1.47758 1.49377 1.56317 1.95362 2.01539 2.04844 2.42597 2.52902 3.36802 3.51990 3.63342 3.72137 3.86900 3.96493 4.00508 4.03892 4.27809 4.30590 4.37205 4.41601 4.43288 4.57252 4.63678 4.73921 4.75831 4.80655 4.92987 4.97449 5.06792 5.10317 5.16500 5.19364 5.31138 5.34434 5.41394 5.45319 5.54360 5.57568 5.63169 5.69947 5.85059 5.94877 6.17319 6.33427 6.40999 6.97065 7.01282 7.15126 7.81393 8.62071 9.30512 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013951 B = 0.002906 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.595794 B = 9634.198832 C =10938.576937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.057 4.057 3 Si 0.965 3.035 4 H -0.293 1.293 5 H -0.274 1.274 6 H -0.297 1.297 7 C -0.230 4.230 8 H 0.072 0.928 9 N -0.607 5.607 10 C 0.175 3.825 11 H 0.066 0.934 12 C -0.165 4.165 13 C -0.150 4.150 14 C 0.138 3.862 15 H 0.067 0.933 16 C -0.116 4.116 17 C -0.077 4.077 18 H 0.072 0.928 19 C 0.010 3.990 20 N -0.698 5.698 21 C 0.595 3.405 22 O -0.544 6.544 23 C -0.048 4.048 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.061 4.061 27 C 0.611 3.389 28 N -0.820 5.820 29 O -0.554 6.554 30 O -0.148 6.148 31 C -0.100 4.100 32 H 0.244 0.756 33 H 0.041 0.959 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.187 0.813 41 H 0.409 0.591 42 H 0.183 0.817 43 H 0.184 0.816 44 H 0.420 0.580 45 H 0.422 0.578 46 H 0.053 0.947 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.800 -13.684 -0.825 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.251 4.251 3 Si 0.795 3.205 4 H -0.220 1.220 5 H -0.199 1.199 6 H -0.224 1.224 7 C -0.359 4.359 8 H 0.090 0.910 9 N -0.329 5.329 10 C 0.068 3.932 11 H 0.084 0.916 12 C -0.203 4.203 13 C -0.188 4.188 14 C 0.032 3.968 15 H 0.086 0.914 16 C -0.156 4.156 17 C -0.096 4.096 18 H 0.090 0.910 19 C -0.109 4.109 20 N -0.348 5.348 21 C 0.381 3.619 22 O -0.424 6.424 23 C -0.102 4.102 24 C -0.152 4.152 25 C -0.148 4.148 26 C -0.115 4.115 27 C 0.394 3.606 28 N -0.383 5.383 29 O -0.434 6.434 30 O -0.044 6.044 31 C -0.140 4.140 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.202 0.798 41 H 0.245 0.755 42 H 0.200 0.800 43 H 0.202 0.798 44 H 0.251 0.749 45 H 0.255 0.745 46 H 0.072 0.928 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.705 -14.019 -0.326 17.642 hybrid contribution 0.098 1.942 -0.681 2.060 sum -10.607 -12.077 -1.007 16.105 Atomic orbital electron populations 1.70030 1.05748 1.24835 1.57441 1.25465 0.96427 1.00207 1.03004 0.85272 0.77824 0.80288 0.77068 1.22002 1.19903 1.22377 1.19267 0.90892 0.83961 1.41801 0.91026 1.45374 1.12956 1.00457 1.74078 1.21396 0.85457 0.94193 0.92113 0.91585 1.23594 0.99112 0.98708 0.98904 1.23420 0.96980 0.99815 0.98573 1.21705 0.96850 0.84992 0.93281 0.91448 1.21948 0.94654 1.00612 0.98343 1.21167 0.96887 0.94103 0.97454 0.90954 1.25071 0.80289 0.98653 1.06906 1.46180 1.10543 1.36977 1.41063 1.16743 0.83891 0.81010 0.80254 1.90857 1.55313 1.44195 1.52006 1.22454 0.88903 0.97643 1.01172 1.22224 0.93310 1.00383 0.99313 1.22237 0.97023 0.96960 0.98562 1.22450 0.84411 1.02368 1.02255 1.16621 0.84595 0.79792 0.79549 1.43600 1.15328 1.37259 1.42158 1.90910 1.33356 1.63374 1.55716 1.84013 1.14350 1.51537 1.54526 1.21852 0.97719 0.95287 0.99095 0.94626 0.94042 0.87453 0.86479 0.92042 0.89948 0.93878 0.91376 0.79818 0.75463 0.80011 0.79835 0.74912 0.74455 0.92808 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.24 10.59 21.65 0.23 -52.01 16 2 C -0.06 -3.07 5.43 84.86 0.46 -2.61 16 3 Si 0.97 44.47 29.56 68.60 2.03 46.50 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 7 C -0.23 -12.23 10.38 84.04 0.87 -11.36 16 8 H 0.07 3.74 7.84 -2.91 -0.02 3.71 16 9 N -0.61 -28.49 2.83 -638.19 -1.80 -30.30 16 10 C 0.18 7.60 3.16 45.43 0.14 7.74 16 11 H 0.07 3.46 6.28 -2.38 -0.01 3.45 16 12 C -0.16 -5.84 5.74 31.76 0.18 -5.66 16 13 C -0.15 -4.75 5.74 31.76 0.18 -4.56 16 14 C 0.14 5.09 4.29 45.25 0.19 5.29 16 15 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 16 C -0.12 -3.68 5.35 30.70 0.16 -3.52 16 17 C -0.08 -2.28 2.76 -10.69 -0.03 -2.31 16 18 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 19 C 0.01 0.25 2.68 86.38 0.23 0.48 16 20 N -0.70 -16.56 4.37 -466.52 -2.04 -18.60 16 21 C 0.60 15.19 7.56 86.63 0.66 15.84 16 22 O -0.54 -16.64 16.86 -4.08 -0.07 -16.71 16 23 C -0.05 -1.05 7.14 24.26 0.17 -0.87 16 24 C -0.13 -2.55 10.60 22.32 0.24 -2.32 16 25 C -0.13 -2.32 10.60 22.32 0.24 -2.08 16 26 C -0.06 -1.17 7.14 24.26 0.17 -1.00 16 27 C 0.61 11.53 8.08 86.63 0.70 12.23 16 28 N -0.82 -9.33 8.87 -175.98 -1.56 -10.89 16 29 O -0.55 -13.97 17.70 -4.07 -0.07 -14.04 16 30 O -0.15 -2.90 10.14 -7.20 -0.07 -2.98 16 31 C -0.10 -3.74 5.20 30.88 0.16 -3.58 16 32 H 0.24 13.51 8.31 -92.71 -0.77 12.74 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.11 3.39 3.94 -2.39 -0.01 3.39 16 35 H 0.12 3.12 4.83 -2.39 -0.01 3.11 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.66 8.00 -2.39 -0.02 1.64 16 40 H 0.19 5.31 1.12 -109.27 -0.12 5.18 16 41 H 0.41 8.59 7.07 -92.70 -0.66 7.93 16 42 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 43 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 44 H 0.42 3.43 8.59 -92.72 -0.80 2.64 16 45 H 0.42 3.31 8.93 -92.71 -0.83 2.48 16 46 H 0.05 1.76 6.71 -2.39 -0.02 1.75 16 47 H 0.03 1.61 8.03 -2.39 -0.02 1.59 16 Total: -1.00 -68.11 368.71 0.05 -68.06 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -1.33 Total: 29.24 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 4.74 Total: 1.71 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -5.18 Total: -111.80 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.21 Total: -33.72 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.11 0.05 -68.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048544025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.765 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds