Wall clock time and date at job start Wed Apr 1 2020 04:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 120.00170 * 2 1 4 4 H 1.48501 * 109.46905 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47085 * 300.00221 * 3 2 1 6 6 H 1.48501 * 109.46699 * 60.00102 * 3 2 1 7 7 C 1.38817 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00404 * 190.74198 * 7 2 1 9 9 N 1.36939 * 119.99656 * 10.75758 * 7 2 1 10 10 C 1.47149 * 120.98797 * 31.16243 * 9 7 2 11 11 C 1.53293 * 108.38376 * 129.49084 * 10 9 7 12 12 O 1.42960 * 109.22044 * 52.30662 * 11 10 9 13 13 C 1.42961 * 114.16902 * 297.41778 * 12 11 10 14 14 C 1.47153 * 120.97812 * 211.19575 * 9 7 2 15 15 H 1.09003 * 109.68059 * 110.74710 * 14 9 7 16 16 C 1.52996 * 109.68462 * 350.23283 * 14 9 7 17 17 N 1.46499 * 109.47259 * 60.58303 * 16 14 9 18 18 C 1.34776 * 120.00079 * 180.02562 * 17 16 14 19 19 O 1.21511 * 120.00046 * 359.97438 * 18 17 16 20 20 C 1.48163 * 120.00312 * 180.02562 * 18 17 16 21 21 C 1.39617 * 120.88999 * 359.97438 * 20 18 17 22 22 C 1.38837 * 118.95344 * 180.02562 * 21 20 18 23 23 O 1.35685 * 119.62741 * 179.97438 * 22 21 20 24 24 N 1.32210 * 120.75732 * 359.97438 * 22 21 20 25 25 C 1.31881 * 121.96454 * 0.02562 * 24 22 21 26 26 C 1.50705 * 119.50940 * 179.97438 * 25 24 22 27 27 C 1.52999 * 117.49612 * 94.99754 * 26 25 24 28 28 C 1.52999 * 117.49642 * 163.61953 * 26 25 24 29 29 C 1.38019 * 120.97555 * 0.25172 * 25 24 22 30 30 H 0.96999 * 120.00147 * 359.97438 * 1 2 3 31 31 H 1.08990 * 109.68884 * 249.22067 * 10 9 7 32 32 H 1.09002 * 109.67798 * 9.73581 * 10 9 7 33 33 H 1.09001 * 109.51379 * 172.23524 * 11 10 9 34 34 H 1.09006 * 109.51330 * 292.33521 * 11 10 9 35 35 H 1.08998 * 109.51383 * 302.65686 * 13 12 11 36 36 H 1.09000 * 109.51580 * 182.50401 * 13 12 11 37 37 H 1.09001 * 109.47042 * 300.58802 * 16 14 9 38 38 H 1.08996 * 109.47454 * 180.59080 * 16 14 9 39 39 H 0.97001 * 120.00068 * 0.02562 * 17 16 14 40 40 H 1.08000 * 120.52593 * 0.04714 * 21 20 18 41 41 H 0.96694 * 114.00519 * 269.97827 * 23 22 21 42 42 H 1.09000 * 115.55975 * 309.31044 * 26 25 24 43 43 H 1.08996 * 117.50366 * 0.02562 * 27 26 25 44 44 H 1.09008 * 117.49794 * 214.97898 * 27 26 25 45 45 H 1.09005 * 117.49353 * 145.02356 * 28 26 25 46 46 H 1.08993 * 117.52230 * 359.97438 * 28 26 25 47 47 H 1.08008 * 120.43226 * 179.74203 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0760 -1.2103 0.1749 9 7 1.3436 -2.3778 -0.2203 10 6 0.1537 -2.4231 -1.0848 11 6 0.3406 -3.5510 -2.1059 12 8 0.6713 -4.7593 -1.4171 13 6 1.9025 -4.7021 -0.6929 14 6 1.7956 -3.6330 0.4005 15 1 1.0754 -3.9495 1.1550 16 6 3.1643 -3.4225 1.0510 17 7 3.0594 -2.3920 2.0870 18 6 4.1483 -2.0376 2.7977 19 8 5.2170 -2.5731 2.5795 20 6 4.0421 -0.9957 3.8458 21 6 2.8235 -0.3687 4.1123 22 6 2.7699 0.6026 5.1029 23 8 1.5928 1.2211 5.3729 24 7 3.8527 0.9318 5.7863 25 6 5.0203 0.3610 5.5621 26 6 6.2192 0.7793 6.3737 27 6 6.5594 -0.0529 7.6117 28 6 7.4376 -0.1460 6.3624 29 6 5.1616 -0.6098 4.5912 30 1 -0.4850 0.8400 0.0004 31 1 -0.7321 -2.6181 -0.4804 32 1 0.0411 -1.4716 -1.6045 33 1 -0.5840 -3.6923 -2.6657 34 1 1.1459 -3.2906 -2.7928 35 1 2.7141 -4.4462 -1.3741 36 1 2.1017 -5.6714 -0.2360 37 1 3.8814 -3.1050 0.2940 38 1 3.5005 -4.3568 1.5006 39 1 2.2062 -1.9647 2.2614 40 1 1.9364 -0.6352 3.5569 41 1 1.4407 2.0218 4.8526 42 1 6.4026 1.8526 6.4228 43 1 5.9163 -0.9032 7.8389 44 1 6.9667 0.4730 8.4753 45 1 8.4228 0.3187 6.4040 46 1 7.3724 -1.0575 5.7683 47 1 6.1228 -1.0686 4.4121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050952880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:07 Heat of formation + Delta-G solvation = -22.481707 kcal Electronic energy + Delta-G solvation = -31453.888054 eV Core-core repulsion = 27218.233300 eV Total energy + Delta-G solvation = -4235.654755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.82692 -39.29258 -38.35735 -37.88142 -36.18343 -35.45551 -33.76205 -32.79301 -31.51093 -30.51455 -29.97387 -27.34840 -26.08210 -24.85106 -23.79149 -23.53659 -22.48206 -21.80659 -21.52736 -19.96862 -19.68319 -18.53069 -17.37550 -17.04350 -16.62804 -15.99806 -15.91612 -15.55361 -15.44020 -15.33630 -14.82064 -14.73216 -14.53285 -14.47435 -13.93648 -13.90903 -13.50163 -13.14281 -13.06193 -12.73238 -12.34005 -12.04131 -12.00033 -11.81523 -11.64072 -11.54525 -11.16837 -11.01186 -10.85732 -10.83126 -10.61737 -10.49907 -10.33741 -10.15805 -10.02875 -9.79645 -9.73600 -9.38031 -9.06408 -8.80695 -8.79402 -8.45366 -6.84018 -6.02018 -3.52250 0.75584 0.94621 2.95725 3.14883 3.26645 3.30375 3.35547 3.44593 3.74318 3.85335 4.22729 4.29170 4.45719 4.65409 4.72578 4.86009 4.96242 5.02047 5.04648 5.08555 5.15324 5.35393 5.44400 5.47519 5.54619 5.63900 5.68236 5.72145 5.77209 5.90180 5.92716 5.96424 5.98927 6.07957 6.11439 6.16006 6.25749 6.39594 6.44286 6.64561 6.87411 6.99019 7.41249 7.47998 7.58976 7.79398 7.86324 7.96168 8.17814 8.53504 8.94332 9.54453 10.14065 11.03893 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003630 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.474488 B = 7711.898383 C = 8917.512819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.013 3.987 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.258 4.258 8 H 0.073 0.927 9 N -0.592 5.592 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.057 3.943 14 C 0.124 3.876 15 H 0.043 0.957 16 C 0.134 3.866 17 N -0.682 5.682 18 C 0.551 3.449 19 O -0.549 6.549 20 C -0.060 4.060 21 C -0.150 4.150 22 C 0.313 3.687 23 O -0.479 6.479 24 N -0.487 5.487 25 C 0.172 3.828 26 C -0.107 4.107 27 C -0.161 4.161 28 C -0.172 4.172 29 C -0.127 4.127 30 H 0.256 0.744 31 H 0.030 0.970 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.416 0.584 40 H 0.154 0.846 41 H 0.403 0.597 42 H 0.123 0.877 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 -1.151 7.921 10.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.188 4.188 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.215 1.215 7 C -0.388 4.388 8 H 0.091 0.909 9 N -0.318 5.318 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.310 6.310 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.060 0.940 16 C 0.010 3.990 17 N -0.333 5.333 18 C 0.336 3.664 19 O -0.429 6.429 20 C -0.071 4.071 21 C -0.172 4.172 22 C 0.134 3.866 23 O -0.286 6.286 24 N -0.207 5.207 25 C 0.034 3.966 26 C -0.126 4.126 27 C -0.199 4.199 28 C -0.209 4.209 29 C -0.148 4.148 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.256 0.744 40 H 0.171 0.829 41 H 0.261 0.739 42 H 0.141 0.859 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.520 -1.369 8.737 11.608 hybrid contribution -0.044 1.401 -1.000 1.722 sum 7.476 0.032 7.737 10.759 Atomic orbital electron populations 1.69977 1.05086 1.25670 1.53154 1.25121 0.95255 0.98051 1.00328 0.86407 0.79715 0.84255 0.77716 1.20121 1.21215 1.21469 1.19277 0.91343 0.83326 1.44818 0.90906 1.44100 1.32056 1.02895 1.52723 1.21422 0.88819 0.96864 0.91060 1.23351 0.99197 0.86519 0.95257 1.87809 1.40233 1.36118 1.66852 1.22852 0.86767 0.98640 0.94006 1.21448 0.93530 0.89445 0.93897 0.93956 1.21253 0.97932 0.89889 0.89882 1.45967 1.12257 1.39796 1.35299 1.18003 0.84559 0.82339 0.81506 1.90721 1.27898 1.55419 1.68851 1.20356 0.93458 0.96719 0.96577 1.22514 0.99164 0.98023 0.97468 1.18900 0.84859 0.92539 0.90335 1.84764 1.31811 1.44660 1.67343 1.66654 0.98563 1.28494 1.26980 1.19925 0.90792 0.92230 0.93638 1.20741 0.92600 0.98646 1.00574 1.22977 1.02840 1.02188 0.91883 1.23147 0.94788 1.01660 1.01346 1.22039 0.99880 0.97434 0.95418 0.93350 0.95178 0.88923 0.90192 0.94088 0.93428 0.89829 0.91068 0.91843 0.74418 0.82852 0.73880 0.85875 0.88608 0.88101 0.87858 0.87871 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.91 11.13 55.49 0.62 -22.30 16 2 C 0.01 0.31 5.06 -17.43 -0.09 0.22 16 3 Si 0.89 19.92 29.57 -169.99 -5.03 14.89 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.26 -6.08 7.06 -15.06 -0.11 -6.19 16 8 H 0.07 1.76 5.81 -52.49 -0.30 1.46 16 9 N -0.59 -12.98 3.03 -164.31 -0.50 -13.48 16 10 C 0.14 3.13 5.38 -3.54 -0.02 3.11 16 11 C 0.03 0.64 6.98 37.31 0.26 0.90 16 12 O -0.39 -7.33 10.74 -35.23 -0.38 -7.71 16 13 C 0.06 0.95 6.29 37.31 0.23 1.19 16 14 C 0.12 2.30 3.21 -67.42 -0.22 2.08 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 16 C 0.13 2.36 4.45 -4.04 -0.02 2.34 16 17 N -0.68 -12.35 3.73 -61.15 -0.23 -12.58 16 18 C 0.55 10.07 7.80 -12.18 -0.10 9.98 16 19 O -0.55 -11.06 16.44 5.36 0.09 -10.97 16 20 C -0.06 -1.00 5.91 -104.68 -0.62 -1.62 16 21 C -0.15 -2.44 9.55 -38.85 -0.37 -2.81 16 22 C 0.31 4.98 7.74 -17.17 -0.13 4.85 16 23 O -0.48 -6.95 13.56 -18.76 -0.25 -7.20 16 24 N -0.49 -7.68 10.27 -9.60 -0.10 -7.78 16 25 C 0.17 2.44 6.45 -82.65 -0.53 1.91 16 26 C -0.11 -1.17 6.21 -91.77 -0.57 -1.74 16 27 C -0.16 -1.49 10.23 -26.73 -0.27 -1.76 16 28 C -0.17 -1.53 9.79 -26.73 -0.26 -1.79 16 29 C -0.13 -1.90 8.92 -39.03 -0.35 -2.25 16 30 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 2.23 6.33 -51.93 -0.33 1.90 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.35 7.57 -51.93 -0.39 0.96 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.42 7.82 5.45 -40.82 -0.22 7.60 16 40 H 0.15 2.51 6.53 -52.49 -0.34 2.17 16 41 H 0.40 4.21 9.06 45.56 0.41 4.62 16 42 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.10 0.96 6.40 -51.93 -0.33 0.63 16 47 H 0.15 2.08 5.93 -52.48 -0.31 1.77 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -29.39 381.76 -8.79 -38.18 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -5.61 Total: 14.78 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -3.16 Total: 8.41 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.21 Total: -56.14 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.54 Total: -25.88 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.39 -8.79 -38.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050952880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.699 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds