Wall clock time and date at job start Wed Apr 1 2020 04:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 120.00170 * 2 1 4 4 H 1.48501 * 109.46905 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47085 * 300.00221 * 3 2 1 6 6 H 1.48501 * 109.46699 * 60.00102 * 3 2 1 7 7 C 1.38817 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00404 * 190.74198 * 7 2 1 9 9 N 1.36939 * 119.99656 * 10.75758 * 7 2 1 10 10 C 1.47149 * 120.98797 * 31.16243 * 9 7 2 11 11 C 1.53293 * 108.38376 * 129.49084 * 10 9 7 12 12 O 1.42960 * 109.22044 * 52.30662 * 11 10 9 13 13 C 1.42961 * 114.16902 * 297.41778 * 12 11 10 14 14 C 1.47153 * 120.97812 * 211.19575 * 9 7 2 15 15 H 1.09003 * 109.68059 * 110.74710 * 14 9 7 16 16 C 1.52996 * 109.68462 * 350.23283 * 14 9 7 17 17 N 1.46499 * 109.47259 * 60.58303 * 16 14 9 18 18 C 1.34776 * 120.00079 * 180.02562 * 17 16 14 19 19 O 1.21511 * 120.00046 * 359.97438 * 18 17 16 20 20 C 1.48163 * 120.00312 * 180.02562 * 18 17 16 21 21 C 1.39617 * 120.88999 * 359.97438 * 20 18 17 22 22 C 1.38837 * 118.95344 * 180.02562 * 21 20 18 23 23 O 1.35685 * 119.62741 * 179.97438 * 22 21 20 24 24 N 1.32210 * 120.75732 * 359.97438 * 22 21 20 25 25 C 1.31881 * 121.96454 * 0.02562 * 24 22 21 26 26 C 1.50705 * 119.50940 * 179.97438 * 25 24 22 27 27 C 1.52999 * 117.49612 * 94.99754 * 26 25 24 28 28 C 1.52999 * 117.49642 * 163.61953 * 26 25 24 29 29 C 1.38019 * 120.97555 * 0.25172 * 25 24 22 30 30 H 0.96999 * 120.00147 * 359.97438 * 1 2 3 31 31 H 1.08990 * 109.68884 * 249.22067 * 10 9 7 32 32 H 1.09002 * 109.67798 * 9.73581 * 10 9 7 33 33 H 1.09001 * 109.51379 * 172.23524 * 11 10 9 34 34 H 1.09006 * 109.51330 * 292.33521 * 11 10 9 35 35 H 1.08998 * 109.51383 * 302.65686 * 13 12 11 36 36 H 1.09000 * 109.51580 * 182.50401 * 13 12 11 37 37 H 1.09001 * 109.47042 * 300.58802 * 16 14 9 38 38 H 1.08996 * 109.47454 * 180.59080 * 16 14 9 39 39 H 0.97001 * 120.00068 * 0.02562 * 17 16 14 40 40 H 1.08000 * 120.52593 * 0.04714 * 21 20 18 41 41 H 0.96694 * 114.00519 * 269.97827 * 23 22 21 42 42 H 1.09000 * 115.55975 * 309.31044 * 26 25 24 43 43 H 1.08996 * 117.50366 * 0.02562 * 27 26 25 44 44 H 1.09008 * 117.49794 * 214.97898 * 27 26 25 45 45 H 1.09005 * 117.49353 * 145.02356 * 28 26 25 46 46 H 1.08993 * 117.52230 * 359.97438 * 28 26 25 47 47 H 1.08008 * 120.43226 * 179.74203 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0760 -1.2103 0.1749 9 7 1.3436 -2.3778 -0.2203 10 6 0.1537 -2.4231 -1.0848 11 6 0.3406 -3.5510 -2.1059 12 8 0.6713 -4.7593 -1.4171 13 6 1.9025 -4.7021 -0.6929 14 6 1.7956 -3.6330 0.4005 15 1 1.0754 -3.9495 1.1550 16 6 3.1643 -3.4225 1.0510 17 7 3.0594 -2.3920 2.0870 18 6 4.1483 -2.0376 2.7977 19 8 5.2170 -2.5731 2.5795 20 6 4.0421 -0.9957 3.8458 21 6 2.8235 -0.3687 4.1123 22 6 2.7699 0.6026 5.1029 23 8 1.5928 1.2211 5.3729 24 7 3.8527 0.9318 5.7863 25 6 5.0203 0.3610 5.5621 26 6 6.2192 0.7793 6.3737 27 6 6.5594 -0.0529 7.6117 28 6 7.4376 -0.1460 6.3624 29 6 5.1616 -0.6098 4.5912 30 1 -0.4850 0.8400 0.0004 31 1 -0.7321 -2.6181 -0.4804 32 1 0.0411 -1.4716 -1.6045 33 1 -0.5840 -3.6923 -2.6657 34 1 1.1459 -3.2906 -2.7928 35 1 2.7141 -4.4462 -1.3741 36 1 2.1017 -5.6714 -0.2360 37 1 3.8814 -3.1050 0.2940 38 1 3.5005 -4.3568 1.5006 39 1 2.2062 -1.9647 2.2614 40 1 1.9364 -0.6352 3.5569 41 1 1.4407 2.0218 4.8526 42 1 6.4026 1.8526 6.4228 43 1 5.9163 -0.9032 7.8389 44 1 6.9667 0.4730 8.4753 45 1 8.4228 0.3187 6.4040 46 1 7.3724 -1.0575 5.7683 47 1 6.1228 -1.0686 4.4121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050952880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:06 Heat of formation + Delta-G solvation = -44.195261 kcal Electronic energy + Delta-G solvation = -31454.829625 eV Core-core repulsion = 27218.233300 eV Total energy + Delta-G solvation = -4236.596325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.04836 -40.72927 -39.85309 -38.86857 -37.21071 -36.99153 -35.41127 -34.12377 -33.11312 -32.11047 -31.13819 -29.04469 -27.52360 -25.97710 -25.29513 -24.98817 -23.46072 -23.05056 -22.68896 -21.47480 -21.06830 -19.77747 -18.76406 -18.29462 -18.12302 -17.61159 -17.23230 -16.80243 -16.65152 -16.47129 -16.27438 -16.25235 -16.10383 -15.51155 -15.43765 -15.40252 -15.05573 -14.67629 -14.36362 -14.23727 -13.59699 -13.42817 -13.15748 -12.99042 -12.94255 -12.93999 -12.77628 -12.51801 -12.29275 -12.16191 -12.01960 -11.88012 -11.70237 -11.47970 -11.37861 -11.28388 -11.03548 -10.73015 -10.60808 -10.53723 -9.98657 -9.93048 -8.64236 -7.89612 -5.40627 -0.51679 -0.23264 1.33704 1.42548 1.47772 1.66500 2.03377 2.27886 2.40812 2.58289 2.92725 3.03157 3.23046 3.25942 3.40395 3.54093 3.76756 3.79616 3.93682 3.98497 4.04788 4.09962 4.20005 4.24625 4.31102 4.46722 4.47851 4.56888 4.60130 4.62399 4.65904 4.73039 4.77306 4.86340 4.99942 5.02454 5.10023 5.15559 5.23735 5.28298 5.29130 5.41092 5.62642 5.66728 6.28935 6.35285 6.42007 6.48927 6.70434 7.05731 7.09030 7.73863 8.30547 9.14568 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003630 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.474488 B = 7711.898383 C = 8917.512819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 0.932 3.068 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.067 0.933 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.397 6.397 13 C 0.058 3.942 14 C 0.125 3.875 15 H 0.038 0.962 16 C 0.139 3.861 17 N -0.684 5.684 18 C 0.552 3.448 19 O -0.569 6.569 20 C -0.072 4.072 21 C -0.159 4.159 22 C 0.309 3.691 23 O -0.485 6.485 24 N -0.498 5.498 25 C 0.177 3.823 26 C -0.128 4.128 27 C -0.154 4.154 28 C -0.159 4.159 29 C -0.128 4.128 30 H 0.251 0.749 31 H 0.007 0.993 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.119 0.881 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.413 0.587 40 H 0.146 0.854 41 H 0.419 0.581 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.122 0.878 45 H 0.127 0.873 46 H 0.098 0.902 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.868 -1.726 8.702 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.221 4.221 3 Si 0.762 3.238 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.209 1.209 7 C -0.374 4.374 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.024 3.976 11 C -0.032 4.032 12 O -0.316 6.316 13 C -0.021 4.021 14 C 0.018 3.982 15 H 0.056 0.944 16 C 0.015 3.985 17 N -0.334 5.334 18 C 0.338 3.662 19 O -0.451 6.451 20 C -0.083 4.083 21 C -0.181 4.181 22 C 0.130 3.870 23 O -0.295 6.295 24 N -0.218 5.218 25 C 0.039 3.961 26 C -0.147 4.147 27 C -0.191 4.191 28 C -0.196 4.196 29 C -0.148 4.148 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.137 0.863 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.251 0.749 40 H 0.164 0.836 41 H 0.280 0.720 42 H 0.151 0.849 43 H 0.105 0.895 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.116 0.884 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.121 -1.953 9.513 13.323 hybrid contribution -0.507 1.548 -1.193 2.020 sum 8.614 -0.404 8.319 11.982 Atomic orbital electron populations 1.70080 1.05923 1.25598 1.54982 1.25505 0.95609 0.99816 1.01148 0.85745 0.78367 0.82283 0.77400 1.20793 1.22050 1.20852 1.19285 0.91039 0.84029 1.43064 0.91506 1.44294 1.31865 1.03656 1.53322 1.21242 0.88081 0.96992 0.91321 1.23212 1.00514 0.85275 0.94186 1.87812 1.41090 1.35729 1.66944 1.22986 0.86178 0.99610 0.93302 1.21578 0.93712 0.88461 0.94418 0.94402 1.21255 0.96907 0.90748 0.89568 1.45998 1.12091 1.39919 1.35389 1.18208 0.84104 0.82319 0.81551 1.90698 1.28441 1.56301 1.69634 1.20316 0.94296 0.96866 0.96820 1.22428 0.98880 0.98709 0.98079 1.18986 0.85316 0.92523 0.90168 1.84718 1.31387 1.45607 1.67774 1.66782 0.98963 1.28941 1.27122 1.20467 0.91335 0.91144 0.93176 1.20876 0.92293 0.99664 1.01824 1.23073 1.02376 1.01385 0.92282 1.23253 0.95057 1.00755 1.00561 1.22214 0.99773 0.97599 0.95243 0.93898 0.97470 0.91534 0.87867 0.93792 0.93088 0.86334 0.92414 0.89388 0.74895 0.83624 0.72005 0.84859 0.89515 0.85930 0.85517 0.88399 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.18 11.13 21.65 0.24 -47.94 16 2 C -0.02 -1.16 5.06 84.86 0.43 -0.73 16 3 Si 0.93 41.41 29.57 68.60 2.03 43.44 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.24 -11.59 7.06 84.03 0.59 -11.00 16 8 H 0.07 3.26 5.81 -2.91 -0.02 3.24 16 9 N -0.61 -26.57 3.03 -673.75 -2.04 -28.62 16 10 C 0.15 6.55 5.38 86.35 0.46 7.02 16 11 C 0.05 1.64 6.98 72.08 0.50 2.15 16 12 O -0.40 -14.03 10.74 -148.98 -1.60 -15.63 16 13 C 0.06 1.81 6.29 72.08 0.45 2.26 16 14 C 0.12 4.50 3.21 44.96 0.14 4.65 16 15 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 16 C 0.14 4.74 4.45 86.38 0.38 5.12 16 17 N -0.68 -24.73 3.73 -465.68 -1.74 -26.47 16 18 C 0.55 20.10 7.80 86.88 0.68 20.78 16 19 O -0.57 -22.61 16.44 -3.75 -0.06 -22.67 16 20 C -0.07 -2.40 5.91 -19.90 -0.12 -2.52 16 21 C -0.16 -5.23 9.55 22.75 0.22 -5.01 16 22 C 0.31 9.78 7.74 84.78 0.66 10.44 16 23 O -0.49 -13.96 13.56 -90.03 -1.22 -15.18 16 24 N -0.50 -15.33 10.27 -297.16 -3.05 -18.39 16 25 C 0.18 4.83 6.45 42.50 0.27 5.11 16 26 C -0.13 -2.55 6.21 -11.54 -0.07 -2.62 16 27 C -0.15 -2.45 10.23 30.60 0.31 -2.13 16 28 C -0.16 -2.41 9.79 30.60 0.30 -2.11 16 29 C -0.13 -3.72 8.92 22.62 0.20 -3.52 16 30 H 0.25 12.95 8.31 -92.71 -0.77 12.18 16 31 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 3.27 6.33 -2.39 -0.02 3.26 16 33 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.06 2.14 7.57 -2.39 -0.02 2.13 16 38 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.41 15.74 5.45 -92.71 -0.51 15.23 16 40 H 0.15 4.94 6.53 -2.91 -0.02 4.92 16 41 H 0.42 8.60 9.06 -74.06 -0.67 7.93 16 42 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.10 1.61 6.40 -2.39 -0.02 1.59 16 47 H 0.16 4.28 5.93 -2.91 -0.02 4.27 16 Total: -1.00 -62.63 381.76 -2.16 -64.79 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -0.14 Total: 38.77 kcal Atomic # 6 Polarization: 22.46 SS G_CDS: 5.42 Total: 27.88 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -6.59 Total: -121.41 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -2.88 Total: -53.48 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -62.63 -2.16 -64.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050952880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.599 kcal (2) G-P(sol) polarization free energy of solvation -62.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds