Wall clock time and date at job start Wed Apr 1 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99836 * 2 1 4 4 H 1.48509 * 109.47067 * 355.35331 * 3 2 1 5 5 H 1.48499 * 109.47130 * 235.35311 * 3 2 1 6 6 H 1.48497 * 109.47427 * 115.35153 * 3 2 1 7 7 C 1.38804 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00151 * 352.36780 * 7 2 1 9 9 N 1.36942 * 119.99713 * 172.37074 * 7 2 1 10 10 C 1.47281 * 135.92939 * 6.42361 * 9 7 2 11 11 C 1.52599 * 87.57738 * 153.92497 * 10 9 7 12 12 C 1.47284 * 135.92786 * 186.79235 * 9 7 2 13 13 C 1.53348 * 116.36482 * 269.04968 * 11 10 9 14 14 C 1.54774 * 103.67263 * 205.95853 * 13 11 10 15 15 C 1.54555 * 104.07821 * 359.14144 * 14 13 11 16 16 H 1.09002 * 110.32443 * 264.69771 * 15 14 13 17 17 C 1.52997 * 110.32138 * 142.48979 * 15 14 13 18 18 N 1.46507 * 109.46647 * 179.97438 * 17 15 14 19 19 C 1.34781 * 119.99725 * 179.97438 * 18 17 15 20 20 O 1.21610 * 119.99683 * 0.02562 * 19 18 17 21 21 C 1.47391 * 119.99747 * 180.02562 * 19 18 17 22 22 C 1.37355 * 128.56899 * 359.67707 * 21 19 18 23 23 O 1.33490 * 106.34393 * 179.91231 * 22 21 19 24 24 N 1.20661 * 113.15862 * 0.38853 * 23 22 21 25 25 C 1.30015 * 112.30016 * 359.75605 * 24 23 22 26 26 C 1.50696 * 127.33724 * 179.97438 * 25 24 23 27 27 C 1.52999 * 117.49948 * 8.74965 * 26 25 24 28 28 C 1.53001 * 117.49888 * 300.08918 * 26 25 24 29 29 O 1.43112 * 116.33144 * 142.33314 * 11 10 9 30 30 H 0.97008 * 119.99965 * 184.91509 * 1 2 3 31 31 H 1.08999 * 113.51942 * 268.58032 * 10 9 7 32 32 H 1.09003 * 113.51069 * 39.17267 * 10 9 7 33 33 H 1.09003 * 113.51384 * 320.83034 * 12 9 7 34 34 H 1.08998 * 113.51757 * 91.34992 * 12 9 7 35 35 H 1.08997 * 110.58450 * 324.50411 * 13 11 10 36 36 H 1.09000 * 110.58084 * 87.26471 * 13 11 10 37 37 H 1.08995 * 110.50532 * 117.78949 * 14 13 11 38 38 H 1.08997 * 110.50350 * 240.49366 * 14 13 11 39 39 H 1.09000 * 109.47162 * 299.99510 * 17 15 14 40 40 H 1.08993 * 109.47304 * 60.00279 * 17 15 14 41 41 H 0.96998 * 120.00135 * 0.02562 * 18 17 15 42 42 H 1.08000 * 126.82879 * 359.97438 * 22 21 19 43 43 H 1.09002 * 115.55203 * 154.41418 * 26 25 24 44 44 H 1.09007 * 117.49879 * 359.97438 * 27 26 25 45 45 H 1.08993 * 117.50117 * 145.01914 * 27 26 25 46 46 H 1.09006 * 117.49432 * 214.97875 * 28 26 25 47 47 H 1.08992 * 117.49705 * 359.97148 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2890 2.7442 -0.1134 5 1 3.1870 1.6484 -1.1518 6 1 3.0168 1.7468 1.2652 7 6 2.0102 -1.2021 0.0005 8 1 1.4774 -2.1332 0.1252 9 7 3.3705 -1.2074 -0.1569 10 6 4.4310 -0.1881 -0.2330 11 6 5.3987 -1.2496 0.2821 12 6 4.4117 -2.2345 -0.3307 13 6 5.5758 -1.3290 1.8032 14 6 6.9918 -1.9295 1.9758 15 6 7.4824 -2.1577 0.5281 16 1 7.2856 -3.1843 0.2190 17 6 8.9761 -1.8455 0.4178 18 7 9.4211 -2.0683 -0.9601 19 6 10.7090 -1.8549 -1.2952 20 8 11.5018 -1.4779 -0.4536 21 6 11.1566 -2.0785 -2.6816 22 6 10.4212 -2.5045 -3.7606 23 8 11.2640 -2.5509 -4.7948 24 7 12.3896 -2.2273 -4.5046 25 6 12.5027 -1.9066 -3.2497 26 6 13.7476 -1.4555 -2.5302 27 6 14.9853 -1.1576 -3.3789 28 6 14.9383 -2.4160 -2.5087 29 8 6.7152 -1.2342 -0.2789 30 1 -0.4850 -0.8370 0.0720 31 1 4.6465 0.1403 -1.2498 32 1 4.2861 0.6425 0.4578 33 1 4.2506 -3.1243 0.2779 34 1 4.6211 -2.4694 -1.3743 35 1 5.5244 -0.3350 2.2474 36 1 4.8233 -1.9836 2.2430 37 1 7.6441 -1.2265 2.4938 38 1 6.9423 -2.8751 2.5157 39 1 9.1512 -0.8054 0.6929 40 1 9.5342 -2.4978 1.0894 41 1 8.7887 -2.3686 -1.6315 42 1 9.3700 -2.7518 -3.7707 43 1 13.5827 -0.8384 -1.6470 44 1 14.8992 -1.2883 -4.4577 45 1 15.6347 -0.3449 -3.0538 46 1 15.5569 -2.4306 -1.6113 47 1 14.8210 -3.3744 -3.0144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053658858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:07 Heat of formation + Delta-G solvation = 75.718599 kcal Electronic energy + Delta-G solvation = -30058.110511 eV Core-core repulsion = 25826.714042 eV Total energy + Delta-G solvation = -4231.396470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.28767 -40.48582 -39.66724 -37.82879 -37.04380 -34.83510 -33.60879 -32.46724 -32.32807 -32.00282 -29.61969 -27.32709 -25.75114 -25.33812 -24.64895 -23.50510 -22.76030 -21.59643 -21.48995 -20.92924 -20.42990 -19.22087 -18.67440 -18.04515 -17.51911 -17.08262 -16.74065 -16.17781 -15.91336 -15.76792 -15.37478 -15.09767 -14.91038 -14.67096 -14.24127 -13.79471 -13.61777 -13.38576 -13.09777 -13.08473 -12.51105 -12.48608 -12.07069 -12.02792 -11.99390 -11.68572 -11.61820 -11.61327 -11.36623 -11.10905 -10.84839 -10.74588 -10.51365 -10.39437 -10.34086 -10.15695 -9.90690 -9.76949 -9.39330 -9.30418 -9.02774 -8.93739 -7.24186 -6.39582 -3.31535 0.67908 1.35685 2.49123 2.85299 2.89690 3.36808 3.40193 3.43712 3.57491 3.59975 3.77080 3.83437 4.43039 4.45496 4.50103 4.53149 4.57351 4.59361 4.63975 4.65953 4.74872 4.83419 4.90446 5.07611 5.11228 5.24473 5.27689 5.34118 5.34824 5.40599 5.51002 5.53517 5.69358 5.71313 5.78835 5.83062 6.03428 6.08880 6.10608 6.15912 6.19228 6.25463 6.28623 6.46353 6.97621 7.12799 7.15515 7.80510 7.85887 8.15599 8.89259 9.41374 10.25658 11.12992 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.002131 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.188405 B =13135.778927 C =13680.782901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.023 4.023 3 Si 1.068 2.932 4 H -0.293 1.293 5 H -0.285 1.285 6 H -0.293 1.293 7 C -0.305 4.305 8 H 0.084 0.916 9 N -0.619 5.619 10 C 0.115 3.885 11 C 0.059 3.941 12 C 0.111 3.889 13 C -0.115 4.115 14 C -0.145 4.145 15 C 0.061 3.939 16 H 0.076 0.924 17 C 0.130 3.870 18 N -0.716 5.716 19 C 0.596 3.404 20 O -0.530 6.530 21 C -0.248 4.248 22 C -0.001 4.001 23 O 0.100 5.900 24 N -0.358 5.358 25 C 0.102 3.898 26 C -0.086 4.086 27 C -0.166 4.166 28 C -0.158 4.158 29 O -0.355 6.355 30 H 0.261 0.739 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.404 0.596 42 H 0.228 0.772 43 H 0.139 0.861 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.623 -6.959 -2.874 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.222 4.222 3 Si 0.900 3.100 4 H -0.221 1.221 5 H -0.212 1.212 6 H -0.221 1.221 7 C -0.431 4.431 8 H 0.102 0.898 9 N -0.349 5.349 10 C -0.011 4.011 11 C 0.019 3.981 12 C -0.016 4.016 13 C -0.152 4.152 14 C -0.183 4.183 15 C 0.003 3.997 16 H 0.094 0.906 17 C 0.007 3.993 18 N -0.367 5.367 19 C 0.382 3.618 20 O -0.407 6.407 21 C -0.256 4.256 22 C -0.084 4.084 23 O 0.040 5.960 24 N -0.064 5.064 25 C -0.060 4.060 26 C -0.105 4.105 27 C -0.203 4.203 28 C -0.196 4.196 29 O -0.273 6.273 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.239 0.761 42 H 0.245 0.755 43 H 0.157 0.843 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 27.601 -4.977 -3.515 28.265 hybrid contribution -0.887 -1.922 0.539 2.184 sum 26.714 -6.899 -2.976 27.750 Atomic orbital electron populations 1.70931 1.05295 1.29495 1.51524 1.25747 0.96437 1.01000 0.98979 0.83730 0.73900 0.76005 0.76343 1.22063 1.21174 1.22076 1.20074 0.78064 0.95875 1.49074 0.89800 1.45747 1.02023 1.01600 1.85549 1.22686 0.85994 0.93212 0.99187 1.23660 0.81627 1.00181 0.92647 1.22667 0.87376 0.93505 0.98051 1.22339 0.95843 1.02523 0.94544 1.22945 0.97364 1.02102 0.95894 1.23224 0.90413 0.94356 0.91713 0.90621 1.21548 0.92474 1.02958 0.82360 1.45719 1.09412 1.68938 1.12627 1.16778 0.82148 0.77496 0.85366 1.90792 1.53450 1.46213 1.50260 1.22249 0.94086 1.12944 0.96281 1.26499 0.98508 0.97524 0.85856 1.84598 1.13277 1.63234 1.34862 1.73631 0.98894 1.17597 1.16302 1.23843 0.94551 0.98807 0.88845 1.20377 0.83980 1.04904 1.01270 1.23070 0.98860 0.99757 0.98621 1.23033 0.99240 0.94779 1.02551 1.88945 1.21530 1.62900 1.53924 0.92843 0.92835 0.92522 0.93503 0.93834 0.90356 0.89606 0.90341 0.90225 0.90188 0.89864 0.76112 0.75527 0.84291 0.88059 0.87768 0.87632 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.86 13.70 55.49 0.76 -28.10 16 2 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 3 Si 1.07 26.34 25.13 -169.99 -4.27 22.07 16 4 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 5 H -0.28 -6.60 6.10 56.52 0.34 -6.25 16 6 H -0.29 -6.78 6.63 56.52 0.37 -6.40 16 7 C -0.31 -8.55 11.07 -15.06 -0.17 -8.71 16 8 H 0.08 2.47 8.05 -52.48 -0.42 2.04 16 9 N -0.62 -14.72 3.68 -184.90 -0.68 -15.40 16 10 C 0.11 2.40 5.28 -7.71 -0.04 2.36 16 11 C 0.06 0.99 1.39 -91.01 -0.13 0.86 16 12 C 0.11 2.07 8.18 -7.86 -0.06 2.01 16 13 C -0.11 -1.65 6.50 -25.62 -0.17 -1.82 16 14 C -0.14 -1.50 6.65 -24.98 -0.17 -1.67 16 15 C 0.06 0.64 3.35 -25.92 -0.09 0.56 16 16 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 17 C 0.13 1.25 5.28 -4.04 -0.02 1.23 16 18 N -0.72 -6.62 5.51 -61.39 -0.34 -6.96 16 19 C 0.60 6.64 7.81 -12.53 -0.10 6.54 16 20 O -0.53 -7.47 15.80 5.27 0.08 -7.38 16 21 C -0.25 -2.45 6.47 -102.89 -0.67 -3.12 16 22 C 0.00 -0.01 11.85 30.41 0.36 0.35 16 23 O 0.10 0.90 11.06 18.66 0.21 1.11 16 24 N -0.36 -3.86 11.71 34.78 0.41 -3.45 16 25 C 0.10 1.10 7.07 -79.76 -0.56 0.53 16 26 C -0.09 -0.84 5.90 -91.77 -0.54 -1.38 16 27 C -0.17 -1.29 10.17 -26.69 -0.27 -1.56 16 28 C -0.16 -1.24 10.24 -26.69 -0.27 -1.51 16 29 O -0.36 -5.06 11.12 -35.23 -0.39 -5.46 16 30 H 0.26 7.99 8.73 -40.82 -0.36 7.63 16 31 H 0.05 1.13 7.67 -51.93 -0.40 0.73 16 32 H 0.06 1.22 4.69 -51.93 -0.24 0.97 16 33 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 36 H 0.09 1.30 7.92 -51.93 -0.41 0.88 16 37 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.40 2.93 7.66 -40.82 -0.31 2.62 16 42 H 0.23 0.58 7.68 -52.49 -0.40 0.18 16 43 H 0.14 1.45 7.29 -51.93 -0.38 1.07 16 44 H 0.10 0.84 7.97 -51.92 -0.41 0.43 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -34.70 387.14 -8.23 -42.93 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.85 Total: 0.88 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.99 Total: -6.07 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.15 Total: -53.91 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.10 Total: -11.73 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: -4.27 Total: 22.07 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.70 -8.23 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053658858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.647 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds