Wall clock time and date at job start Wed Apr 1 2020 04:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99836 * 2 1 4 4 H 1.48509 * 109.47067 * 355.35331 * 3 2 1 5 5 H 1.48499 * 109.47130 * 235.35311 * 3 2 1 6 6 H 1.48497 * 109.47427 * 115.35153 * 3 2 1 7 7 C 1.38804 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00151 * 352.36780 * 7 2 1 9 9 N 1.36942 * 119.99713 * 172.37074 * 7 2 1 10 10 C 1.47281 * 135.92939 * 6.42361 * 9 7 2 11 11 C 1.52599 * 87.57738 * 153.92497 * 10 9 7 12 12 C 1.47284 * 135.92786 * 186.79235 * 9 7 2 13 13 C 1.53348 * 116.36482 * 269.04968 * 11 10 9 14 14 C 1.54774 * 103.67263 * 205.95853 * 13 11 10 15 15 C 1.54555 * 104.07821 * 359.14144 * 14 13 11 16 16 H 1.09002 * 110.32443 * 264.69771 * 15 14 13 17 17 C 1.52997 * 110.32138 * 142.48979 * 15 14 13 18 18 N 1.46507 * 109.46647 * 179.97438 * 17 15 14 19 19 C 1.34781 * 119.99725 * 179.97438 * 18 17 15 20 20 O 1.21610 * 119.99683 * 0.02562 * 19 18 17 21 21 C 1.47391 * 119.99747 * 180.02562 * 19 18 17 22 22 C 1.37355 * 128.56899 * 359.67707 * 21 19 18 23 23 O 1.33490 * 106.34393 * 179.91231 * 22 21 19 24 24 N 1.20661 * 113.15862 * 0.38853 * 23 22 21 25 25 C 1.30015 * 112.30016 * 359.75605 * 24 23 22 26 26 C 1.50696 * 127.33724 * 179.97438 * 25 24 23 27 27 C 1.52999 * 117.49948 * 8.74965 * 26 25 24 28 28 C 1.53001 * 117.49888 * 300.08918 * 26 25 24 29 29 O 1.43112 * 116.33144 * 142.33314 * 11 10 9 30 30 H 0.97008 * 119.99965 * 184.91509 * 1 2 3 31 31 H 1.08999 * 113.51942 * 268.58032 * 10 9 7 32 32 H 1.09003 * 113.51069 * 39.17267 * 10 9 7 33 33 H 1.09003 * 113.51384 * 320.83034 * 12 9 7 34 34 H 1.08998 * 113.51757 * 91.34992 * 12 9 7 35 35 H 1.08997 * 110.58450 * 324.50411 * 13 11 10 36 36 H 1.09000 * 110.58084 * 87.26471 * 13 11 10 37 37 H 1.08995 * 110.50532 * 117.78949 * 14 13 11 38 38 H 1.08997 * 110.50350 * 240.49366 * 14 13 11 39 39 H 1.09000 * 109.47162 * 299.99510 * 17 15 14 40 40 H 1.08993 * 109.47304 * 60.00279 * 17 15 14 41 41 H 0.96998 * 120.00135 * 0.02562 * 18 17 15 42 42 H 1.08000 * 126.82879 * 359.97438 * 22 21 19 43 43 H 1.09002 * 115.55203 * 154.41418 * 26 25 24 44 44 H 1.09007 * 117.49879 * 359.97438 * 27 26 25 45 45 H 1.08993 * 117.50117 * 145.01914 * 27 26 25 46 46 H 1.09006 * 117.49432 * 214.97875 * 28 26 25 47 47 H 1.08992 * 117.49705 * 359.97148 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2890 2.7442 -0.1134 5 1 3.1870 1.6484 -1.1518 6 1 3.0168 1.7468 1.2652 7 6 2.0102 -1.2021 0.0005 8 1 1.4774 -2.1332 0.1252 9 7 3.3705 -1.2074 -0.1569 10 6 4.4310 -0.1881 -0.2330 11 6 5.3987 -1.2496 0.2821 12 6 4.4117 -2.2345 -0.3307 13 6 5.5758 -1.3290 1.8032 14 6 6.9918 -1.9295 1.9758 15 6 7.4824 -2.1577 0.5281 16 1 7.2856 -3.1843 0.2190 17 6 8.9761 -1.8455 0.4178 18 7 9.4211 -2.0683 -0.9601 19 6 10.7090 -1.8549 -1.2952 20 8 11.5018 -1.4779 -0.4536 21 6 11.1566 -2.0785 -2.6816 22 6 10.4212 -2.5045 -3.7606 23 8 11.2640 -2.5509 -4.7948 24 7 12.3896 -2.2273 -4.5046 25 6 12.5027 -1.9066 -3.2497 26 6 13.7476 -1.4555 -2.5302 27 6 14.9853 -1.1576 -3.3789 28 6 14.9383 -2.4160 -2.5087 29 8 6.7152 -1.2342 -0.2789 30 1 -0.4850 -0.8370 0.0720 31 1 4.6465 0.1403 -1.2498 32 1 4.2861 0.6425 0.4578 33 1 4.2506 -3.1243 0.2779 34 1 4.6211 -2.4694 -1.3743 35 1 5.5244 -0.3350 2.2474 36 1 4.8233 -1.9836 2.2430 37 1 7.6441 -1.2265 2.4938 38 1 6.9423 -2.8751 2.5157 39 1 9.1512 -0.8054 0.6929 40 1 9.5342 -2.4978 1.0894 41 1 8.7887 -2.3686 -1.6315 42 1 9.3700 -2.7518 -3.7707 43 1 13.5827 -0.8384 -1.6470 44 1 14.8992 -1.2883 -4.4577 45 1 15.6347 -0.3449 -3.0538 46 1 15.5569 -2.4306 -1.6113 47 1 14.8210 -3.3744 -3.0144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053658858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:06 Heat of formation + Delta-G solvation = 50.675130 kcal Electronic energy + Delta-G solvation = -30059.196478 eV Core-core repulsion = 25826.714042 eV Total energy + Delta-G solvation = -4232.482436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.99984 -41.70158 -40.57724 -38.53690 -38.32079 -35.78056 -34.52453 -34.27202 -33.22619 -32.89482 -30.84317 -28.88979 -27.27298 -26.30246 -25.35847 -24.50254 -23.38403 -23.25627 -22.34357 -21.73505 -21.11502 -20.73101 -19.53884 -19.36771 -18.76523 -17.84364 -17.66742 -17.40735 -17.02222 -16.51927 -16.41348 -16.31464 -15.93262 -15.81339 -15.30931 -15.14883 -14.93243 -14.58957 -14.38835 -14.15471 -13.65828 -13.35250 -13.16678 -13.12841 -12.79551 -12.75869 -12.67020 -12.58893 -12.49242 -12.35499 -12.23248 -12.03174 -11.64013 -11.52241 -11.38764 -11.22039 -11.17847 -11.01947 -10.86119 -10.58589 -10.46137 -10.15335 -9.23233 -8.66642 -5.49615 0.04300 0.62713 1.38318 1.46520 1.65546 1.82110 2.09408 2.22953 2.51511 2.61058 2.77741 2.93202 2.97154 3.17577 3.24561 3.40407 3.60522 3.69020 3.76426 3.85208 3.95153 3.98602 4.01295 4.04120 4.13692 4.38839 4.43911 4.49256 4.56282 4.58203 4.64334 4.65426 4.68404 4.72555 4.83770 4.86546 4.91025 4.96796 5.02624 5.08027 5.12711 5.13571 5.14949 5.24655 5.32115 5.92389 5.97490 6.41458 6.67000 7.07739 7.16378 7.29551 8.22378 8.88869 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.002131 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.188405 B =13135.778927 C =13680.782901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.082 4.082 3 Si 1.104 2.896 4 H -0.305 1.305 5 H -0.263 1.263 6 H -0.271 1.271 7 C -0.286 4.286 8 H 0.056 0.944 9 N -0.649 5.649 10 C 0.101 3.899 11 C 0.085 3.915 12 C 0.110 3.890 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.063 3.937 16 H 0.098 0.902 17 C 0.134 3.866 18 N -0.706 5.706 19 C 0.598 3.402 20 O -0.567 6.567 21 C -0.277 4.277 22 C 0.031 3.969 23 O 0.097 5.903 24 N -0.377 5.377 25 C 0.086 3.914 26 C -0.107 4.107 27 C -0.157 4.157 28 C -0.150 4.150 29 O -0.360 6.360 30 H 0.248 0.752 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.415 0.585 42 H 0.274 0.726 43 H 0.127 0.873 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.068 -7.728 -2.848 30.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.275 4.275 3 Si 0.930 3.070 4 H -0.233 1.233 5 H -0.189 1.189 6 H -0.197 1.197 7 C -0.414 4.414 8 H 0.074 0.926 9 N -0.380 5.380 10 C -0.023 4.023 11 C 0.044 3.956 12 C -0.015 4.015 13 C -0.158 4.158 14 C -0.173 4.173 15 C 0.005 3.995 16 H 0.115 0.885 17 C 0.011 3.989 18 N -0.357 5.357 19 C 0.385 3.615 20 O -0.447 6.447 21 C -0.285 4.285 22 C -0.051 4.051 23 O 0.039 5.961 24 N -0.085 5.085 25 C -0.076 4.076 26 C -0.127 4.127 27 C -0.194 4.194 28 C -0.188 4.188 29 O -0.279 6.279 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.252 0.748 42 H 0.289 0.711 43 H 0.145 0.855 44 H 0.113 0.887 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 30.087 -5.797 -3.509 30.841 hybrid contribution -1.606 -1.813 0.496 2.472 sum 28.481 -7.610 -3.014 29.634 Atomic orbital electron populations 1.71028 1.06609 1.28736 1.55030 1.26965 0.96491 1.04420 0.99576 0.83312 0.73301 0.72236 0.78142 1.23265 1.18859 1.19735 1.19932 0.80496 0.94563 1.46382 0.92603 1.45773 1.01407 1.04861 1.85939 1.22839 0.86454 0.93756 0.99288 1.23102 0.82157 0.96537 0.93777 1.22861 0.86164 0.93464 0.99042 1.22370 0.98243 1.02552 0.92600 1.22942 0.94728 1.03465 0.96150 1.23437 0.90142 0.94534 0.91343 0.88472 1.21511 0.91970 1.02630 0.82817 1.45630 1.09011 1.68219 1.12887 1.16905 0.82283 0.76856 0.85478 1.90772 1.54495 1.48089 1.51343 1.22221 0.94366 1.15333 0.96552 1.27263 0.99498 0.94253 0.84083 1.84570 1.13161 1.62970 1.35409 1.73632 0.99819 1.18635 1.16410 1.24135 0.95443 0.98890 0.89125 1.20393 0.84608 1.06152 1.01500 1.23117 0.97885 1.00308 0.98109 1.23096 0.98167 0.94473 1.03039 1.88930 1.20282 1.64066 1.54575 0.94299 0.92876 0.93028 0.92371 0.92697 0.90827 0.90547 0.88979 0.87756 0.91476 0.88345 0.74778 0.71089 0.85537 0.88706 0.86117 0.86162 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.95 13.70 21.65 0.30 -61.66 16 2 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 3 Si 1.10 53.11 25.13 68.60 1.72 54.84 16 4 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 5 H -0.26 -11.57 6.10 99.48 0.61 -10.96 16 6 H -0.27 -11.90 6.63 99.48 0.66 -11.24 16 7 C -0.29 -16.24 11.07 84.03 0.93 -15.31 16 8 H 0.06 3.40 8.05 -2.91 -0.02 3.37 16 9 N -0.65 -30.18 3.68 -740.40 -2.73 -32.91 16 10 C 0.10 4.03 5.28 83.58 0.44 4.47 16 11 C 0.09 2.59 1.39 -11.04 -0.02 2.58 16 12 C 0.11 3.85 8.18 83.48 0.68 4.54 16 13 C -0.12 -3.09 6.50 31.32 0.20 -2.88 16 14 C -0.13 -2.22 6.65 31.73 0.21 -2.01 16 15 C 0.06 1.05 3.35 31.12 0.10 1.15 16 16 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 17 C 0.13 2.12 5.28 86.38 0.46 2.57 16 18 N -0.71 -10.82 5.51 -466.40 -2.57 -13.39 16 19 C 0.60 12.24 7.81 86.65 0.68 12.92 16 20 O -0.57 -15.52 15.80 -4.06 -0.06 -15.58 16 21 C -0.28 -5.01 6.47 -18.74 -0.12 -5.13 16 22 C 0.03 0.34 11.85 67.61 0.80 1.14 16 23 O 0.10 1.57 11.06 77.01 0.85 2.42 16 24 N -0.38 -7.81 11.71 -44.77 -0.52 -8.33 16 25 C 0.09 1.80 7.07 45.16 0.32 2.12 16 26 C -0.11 -2.07 5.90 -11.54 -0.07 -2.14 16 27 C -0.16 -2.34 10.17 30.62 0.31 -2.03 16 28 C -0.15 -2.23 10.24 30.62 0.31 -1.92 16 29 O -0.36 -8.91 11.12 -148.98 -1.66 -10.56 16 30 H 0.25 15.84 8.73 -92.70 -0.81 15.03 16 31 H 0.05 2.12 7.67 -2.39 -0.02 2.10 16 32 H 0.05 2.11 4.69 -2.39 -0.01 2.09 16 33 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.98 8.11 -2.39 -0.02 1.96 16 36 H 0.08 2.12 7.92 -2.39 -0.02 2.10 16 37 H 0.09 1.32 7.87 -2.39 -0.02 1.30 16 38 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.42 4.33 7.66 -92.71 -0.71 3.62 16 42 H 0.27 0.08 7.68 -2.91 -0.02 0.06 16 43 H 0.13 2.71 7.29 -2.39 -0.02 2.70 16 44 H 0.09 1.54 7.97 -2.38 -0.02 1.52 16 45 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 47 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -78.50 387.14 1.16 -77.35 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.11 Total: 12.16 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 5.71 Total: -4.33 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -5.52 Total: -116.28 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.87 Total: -23.73 kcal Atomic # 14 Polarization: 53.11 SS G_CDS: 1.72 Total: 54.84 kcal Total: -78.50 1.16 -77.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053658858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.021 kcal (2) G-P(sol) polarization free energy of solvation -78.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds