Wall clock time and date at job start Wed Apr 1 2020 04:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00171 * 2 1 4 4 H 1.48493 * 109.47229 * 85.01904 * 3 2 1 5 5 H 1.48503 * 109.46902 * 205.01545 * 3 2 1 6 6 H 1.48498 * 109.47032 * 325.01491 * 3 2 1 7 7 C 1.38815 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99442 * 186.42126 * 7 2 1 9 9 N 1.36927 * 120.00379 * 6.41820 * 7 2 1 10 10 C 1.47213 * 135.97368 * 6.11811 * 9 7 2 11 11 C 1.53000 * 87.68675 * 153.59550 * 10 9 7 12 12 C 1.47212 * 135.97634 * 186.48128 * 9 7 2 13 13 C 1.53658 * 115.10931 * 140.90726 * 11 10 9 14 14 C 1.55497 * 101.96569 * 111.49893 * 13 11 10 15 15 C 1.55017 * 101.04033 * 33.48837 * 14 13 11 16 16 H 1.08997 * 110.30499 * 82.90214 * 15 14 13 17 17 C 1.53000 * 110.37962 * 205.00322 * 15 14 13 18 18 N 1.46500 * 109.47097 * 182.26041 * 17 15 14 19 19 C 1.34783 * 119.99828 * 179.97438 * 18 17 15 20 20 O 1.21613 * 120.00139 * 359.97438 * 19 18 17 21 21 C 1.47394 * 120.00041 * 180.02562 * 19 18 17 22 22 C 1.37362 * 128.56372 * 0.02562 * 21 19 18 23 23 O 1.33491 * 106.34521 * 179.97438 * 22 21 19 24 24 N 1.20658 * 113.15392 * 359.97438 * 23 22 21 25 25 C 1.30021 * 112.30462 * 359.71963 * 24 23 22 26 26 C 1.50694 * 127.33969 * 180.29886 * 25 24 23 27 27 C 1.53005 * 117.49831 * 8.76917 * 26 25 24 28 28 C 1.52998 * 117.50169 * 300.14513 * 26 25 24 29 29 O 1.42392 * 116.33805 * 269.49895 * 11 10 9 30 30 H 0.96996 * 119.99454 * 0.02562 * 1 2 3 31 31 H 1.08997 * 113.49924 * 268.27779 * 10 9 7 32 32 H 1.09001 * 113.49764 * 38.81445 * 10 9 7 33 33 H 1.08998 * 113.50113 * 321.19278 * 12 9 7 34 34 H 1.09003 * 113.49860 * 91.72614 * 12 9 7 35 35 H 1.09000 * 110.93384 * 229.66773 * 13 11 10 36 36 H 1.08999 * 110.92732 * 353.33700 * 13 11 10 37 37 H 1.08996 * 111.10381 * 275.54410 * 14 13 11 38 38 H 1.09001 * 111.13862 * 151.44293 * 14 13 11 39 39 H 1.09007 * 109.47304 * 302.25924 * 17 15 14 40 40 H 1.09001 * 109.47545 * 62.25854 * 17 15 14 41 41 H 0.96990 * 120.00375 * 359.97438 * 18 17 15 42 42 H 1.08004 * 126.83050 * 359.95412 * 22 21 19 43 43 H 1.09002 * 115.54783 * 154.47090 * 26 25 24 44 44 H 1.08992 * 117.49516 * 359.97438 * 27 26 25 45 45 H 1.08999 * 117.49849 * 145.01631 * 27 26 25 46 46 H 1.08991 * 117.50080 * 214.97985 * 28 26 25 47 47 H 1.09004 * 117.49707 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1072 1.3947 5 1 3.5965 1.4119 -0.5921 6 1 1.5044 2.6199 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1052 9 7 1.3320 -2.3844 -0.1315 10 6 -0.0600 -2.7819 -0.3990 11 6 0.4900 -4.0825 -0.9880 12 6 1.6740 -3.8145 -0.0617 13 6 -0.3262 -5.3427 -0.6612 14 6 -0.9135 -5.7161 -2.0518 15 6 0.2351 -5.2647 -2.9899 16 1 1.0015 -6.0375 -3.0485 17 6 -0.3088 -4.9510 -4.3852 18 7 0.7989 -4.5790 -5.2688 19 6 0.5564 -4.2594 -6.5556 20 8 -0.5820 -4.2802 -6.9831 21 6 1.6709 -3.8857 -7.4448 22 6 3.0105 -3.8060 -7.1517 23 8 3.6197 -3.4287 -8.2779 24 7 2.8572 -3.2702 -9.1996 25 6 1.6240 -3.5132 -8.8671 26 6 0.4056 -3.4280 -9.7499 27 6 0.6321 -3.2133 -11.2478 28 6 0.0869 -2.0732 -10.3853 29 8 0.7712 -4.0747 -2.3839 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6511 -2.9299 0.5048 32 1 -0.5598 -2.1483 -1.1317 33 1 2.6388 -4.0530 -0.5095 34 1 1.5528 -4.2423 0.9335 35 1 0.3180 -6.1372 -0.2845 36 1 -1.1214 -5.1181 0.0497 37 1 -1.8278 -5.1584 -2.2542 38 1 -1.0856 -6.7895 -2.1304 39 1 -0.8129 -5.8309 -4.7851 40 1 -1.0165 -4.1244 -4.3220 41 1 1.7068 -4.5628 -4.9280 42 1 3.4780 -4.0081 -6.1993 43 1 -0.4351 -4.0548 -9.4524 44 1 1.6623 -3.1333 -11.5945 45 1 -0.0596 -3.6989 -11.9361 46 1 -0.9635 -1.8087 -10.5062 47 1 0.7582 -1.2434 -10.1645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053658859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:11 Heat of formation + Delta-G solvation = 73.108567 kcal Electronic energy + Delta-G solvation = -30320.894503 eV Core-core repulsion = 26089.384854 eV Total energy + Delta-G solvation = -4231.509649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.12497 -40.13618 -39.40701 -37.68152 -36.62823 -34.58484 -33.43639 -32.24533 -32.14707 -31.80226 -29.40273 -27.11162 -25.25964 -24.77891 -24.50945 -23.57243 -22.61855 -21.54463 -21.49727 -20.80137 -20.25209 -19.09140 -18.50147 -17.88524 -16.90970 -16.88547 -16.47303 -16.03696 -15.68788 -15.18973 -14.98632 -14.97356 -14.45269 -14.28697 -13.94101 -13.59441 -13.49430 -13.37136 -13.08568 -12.49984 -12.38677 -12.34139 -11.91989 -11.84833 -11.84274 -11.53306 -11.50210 -11.28727 -11.14294 -11.05629 -10.82283 -10.70383 -10.46222 -10.18229 -10.12955 -9.98213 -9.79177 -9.75197 -9.49980 -9.16864 -8.81333 -8.69826 -6.88138 -5.77302 -3.07244 0.85433 1.51309 2.66614 3.03139 3.09682 3.39764 3.44841 3.47406 3.58622 3.72847 3.90799 4.00230 4.45272 4.59884 4.61095 4.65398 4.73630 4.76425 4.79827 4.82964 4.95460 5.10568 5.21641 5.27286 5.36454 5.38319 5.44972 5.50461 5.52374 5.60185 5.65420 5.69112 5.84171 5.85894 5.92552 5.99701 6.07283 6.20060 6.28110 6.36987 6.51701 6.62545 6.92611 7.16550 7.33328 7.50127 7.71664 7.96699 7.97839 8.05285 9.04037 9.71178 10.64555 11.41787 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.002834 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.231237 B = 9878.332880 C =11550.119572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.215 4.215 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.161 3.839 11 C 0.056 3.944 12 C 0.111 3.889 13 C -0.136 4.136 14 C -0.145 4.145 15 C 0.063 3.937 16 H 0.073 0.927 17 C 0.125 3.875 18 N -0.713 5.713 19 C 0.596 3.404 20 O -0.531 6.531 21 C -0.246 4.246 22 C -0.001 4.001 23 O 0.099 5.901 24 N -0.359 5.359 25 C 0.101 3.899 26 C -0.085 4.085 27 C -0.166 4.166 28 C -0.157 4.157 29 O -0.333 6.333 30 H 0.253 0.747 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.404 0.596 42 H 0.228 0.772 43 H 0.139 0.861 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 -14.690 -14.341 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.343 4.343 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.034 3.966 11 C 0.015 3.985 12 C -0.016 4.016 13 C -0.174 4.174 14 C -0.183 4.183 15 C 0.004 3.996 16 H 0.091 0.909 17 C 0.002 3.998 18 N -0.364 5.364 19 C 0.382 3.618 20 O -0.409 6.409 21 C -0.254 4.254 22 C -0.084 4.084 23 O 0.039 5.961 24 N -0.066 5.066 25 C -0.061 4.061 26 C -0.104 4.104 27 C -0.204 4.204 28 C -0.196 4.196 29 O -0.251 6.251 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.238 0.762 42 H 0.245 0.755 43 H 0.157 0.843 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.949 -13.778 -15.825 21.004 hybrid contribution 0.306 0.600 1.312 1.475 sum 1.255 -13.178 -14.512 19.643 Atomic orbital electron populations 1.69840 1.05047 1.25369 1.56342 1.24800 0.95658 0.97573 1.02351 0.86114 0.78745 0.83537 0.77449 1.21654 1.20518 1.21594 1.18890 0.90323 0.81504 1.43568 0.90195 1.45525 1.05324 0.99132 1.82778 1.22299 0.88895 0.89107 0.96251 1.23435 0.97472 0.95881 0.81684 1.22691 0.96126 0.87389 0.95345 1.22881 0.99880 0.97601 0.97070 1.23200 0.98519 1.01752 0.94805 1.23256 0.95374 0.88915 0.92022 0.90925 1.21607 0.89199 1.01513 0.87461 1.45687 1.11712 1.69409 1.09593 1.16773 0.86922 0.76956 0.81172 1.90783 1.21913 1.52850 1.75325 1.22262 0.94349 1.13508 0.95261 1.26496 0.92041 0.96609 0.93236 1.84584 1.34148 1.63060 1.14280 1.73612 1.02077 1.20348 1.10528 1.23834 0.92616 0.98248 0.91382 1.20360 0.94747 1.02916 0.92403 1.23049 1.03074 1.02437 0.91821 1.23028 1.02685 0.91404 1.02435 1.88421 1.77418 1.39442 1.19844 0.93670 0.94288 0.91666 0.93782 0.94104 0.90741 0.89737 0.89898 0.90168 0.90149 0.90142 0.76169 0.75532 0.84329 0.88129 0.87873 0.87607 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.70 11.82 55.49 0.66 -27.04 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.43 29.56 -169.99 -5.02 17.40 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.22 -6.12 10.73 -15.06 -0.16 -6.28 16 8 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 9 N -0.60 -15.58 3.77 -184.60 -0.70 -16.27 16 10 C 0.16 3.74 6.71 -7.92 -0.05 3.69 16 11 C 0.06 1.01 1.75 -90.44 -0.16 0.85 16 12 C 0.11 2.23 8.20 -8.08 -0.07 2.17 16 13 C -0.14 -1.76 6.39 -25.06 -0.16 -1.92 16 14 C -0.14 -1.57 6.58 -24.34 -0.16 -1.73 16 15 C 0.06 0.76 3.48 -25.67 -0.09 0.67 16 16 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 17 C 0.13 1.51 5.39 -4.04 -0.02 1.49 16 18 N -0.71 -8.39 5.53 -61.39 -0.34 -8.73 16 19 C 0.60 8.07 7.81 -12.53 -0.10 7.97 16 20 O -0.53 -8.70 15.81 5.27 0.08 -8.62 16 21 C -0.25 -2.97 6.47 -102.89 -0.67 -3.64 16 22 C 0.00 -0.01 11.85 30.41 0.36 0.35 16 23 O 0.10 1.07 11.06 18.66 0.21 1.28 16 24 N -0.36 -4.51 11.71 34.78 0.41 -4.10 16 25 C 0.10 1.29 7.07 -79.77 -0.56 0.72 16 26 C -0.09 -0.98 5.90 -91.77 -0.54 -1.52 16 27 C -0.17 -1.53 10.16 -26.73 -0.27 -1.80 16 28 C -0.16 -1.57 10.23 -26.73 -0.27 -1.85 16 29 O -0.33 -5.79 10.84 -35.23 -0.38 -6.17 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.04 0.91 7.95 -51.93 -0.41 0.50 16 32 H 0.06 1.73 7.60 -51.93 -0.39 1.34 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 35 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 36 H 0.08 1.07 7.81 -51.93 -0.41 0.66 16 37 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.40 3.96 7.66 -40.82 -0.31 3.65 16 42 H 0.23 1.09 7.68 -52.48 -0.40 0.69 16 43 H 0.14 1.65 7.30 -51.93 -0.38 1.28 16 44 H 0.10 0.97 7.97 -51.93 -0.41 0.55 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -35.80 395.20 -9.07 -44.86 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.91 Total: 2.57 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.02 Total: -1.13 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.03 Total: -56.15 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.09 Total: -13.51 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.80 -9.07 -44.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053658859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.970 kcal (2) G-P(sol) polarization free energy of solvation -35.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds