Wall clock time and date at job start Wed Apr 1 2020 04:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00171 * 2 1 4 4 H 1.48493 * 109.47229 * 85.01904 * 3 2 1 5 5 H 1.48503 * 109.46902 * 205.01545 * 3 2 1 6 6 H 1.48498 * 109.47032 * 325.01491 * 3 2 1 7 7 C 1.38815 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99442 * 186.42126 * 7 2 1 9 9 N 1.36927 * 120.00379 * 6.41820 * 7 2 1 10 10 C 1.47213 * 135.97368 * 6.11811 * 9 7 2 11 11 C 1.53000 * 87.68675 * 153.59550 * 10 9 7 12 12 C 1.47212 * 135.97634 * 186.48128 * 9 7 2 13 13 C 1.53658 * 115.10931 * 140.90726 * 11 10 9 14 14 C 1.55497 * 101.96569 * 111.49893 * 13 11 10 15 15 C 1.55017 * 101.04033 * 33.48837 * 14 13 11 16 16 H 1.08997 * 110.30499 * 82.90214 * 15 14 13 17 17 C 1.53000 * 110.37962 * 205.00322 * 15 14 13 18 18 N 1.46500 * 109.47097 * 182.26041 * 17 15 14 19 19 C 1.34783 * 119.99828 * 179.97438 * 18 17 15 20 20 O 1.21613 * 120.00139 * 359.97438 * 19 18 17 21 21 C 1.47394 * 120.00041 * 180.02562 * 19 18 17 22 22 C 1.37362 * 128.56372 * 0.02562 * 21 19 18 23 23 O 1.33491 * 106.34521 * 179.97438 * 22 21 19 24 24 N 1.20658 * 113.15392 * 359.97438 * 23 22 21 25 25 C 1.30021 * 112.30462 * 359.71963 * 24 23 22 26 26 C 1.50694 * 127.33969 * 180.29886 * 25 24 23 27 27 C 1.53005 * 117.49831 * 8.76917 * 26 25 24 28 28 C 1.52998 * 117.50169 * 300.14513 * 26 25 24 29 29 O 1.42392 * 116.33805 * 269.49895 * 11 10 9 30 30 H 0.96996 * 119.99454 * 0.02562 * 1 2 3 31 31 H 1.08997 * 113.49924 * 268.27779 * 10 9 7 32 32 H 1.09001 * 113.49764 * 38.81445 * 10 9 7 33 33 H 1.08998 * 113.50113 * 321.19278 * 12 9 7 34 34 H 1.09003 * 113.49860 * 91.72614 * 12 9 7 35 35 H 1.09000 * 110.93384 * 229.66773 * 13 11 10 36 36 H 1.08999 * 110.92732 * 353.33700 * 13 11 10 37 37 H 1.08996 * 111.10381 * 275.54410 * 14 13 11 38 38 H 1.09001 * 111.13862 * 151.44293 * 14 13 11 39 39 H 1.09007 * 109.47304 * 302.25924 * 17 15 14 40 40 H 1.09001 * 109.47545 * 62.25854 * 17 15 14 41 41 H 0.96990 * 120.00375 * 359.97438 * 18 17 15 42 42 H 1.08004 * 126.83050 * 359.95412 * 22 21 19 43 43 H 1.09002 * 115.54783 * 154.47090 * 26 25 24 44 44 H 1.08992 * 117.49516 * 359.97438 * 27 26 25 45 45 H 1.08999 * 117.49849 * 145.01631 * 27 26 25 46 46 H 1.08991 * 117.50080 * 214.97985 * 28 26 25 47 47 H 1.09004 * 117.49707 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1072 1.3947 5 1 3.5965 1.4119 -0.5921 6 1 1.5044 2.6199 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0852 -1.2051 0.1052 9 7 1.3320 -2.3844 -0.1315 10 6 -0.0600 -2.7819 -0.3990 11 6 0.4900 -4.0825 -0.9880 12 6 1.6740 -3.8145 -0.0617 13 6 -0.3262 -5.3427 -0.6612 14 6 -0.9135 -5.7161 -2.0518 15 6 0.2351 -5.2647 -2.9899 16 1 1.0015 -6.0375 -3.0485 17 6 -0.3088 -4.9510 -4.3852 18 7 0.7989 -4.5790 -5.2688 19 6 0.5564 -4.2594 -6.5556 20 8 -0.5820 -4.2802 -6.9831 21 6 1.6709 -3.8857 -7.4448 22 6 3.0105 -3.8060 -7.1517 23 8 3.6197 -3.4287 -8.2779 24 7 2.8572 -3.2702 -9.1996 25 6 1.6240 -3.5132 -8.8671 26 6 0.4056 -3.4280 -9.7499 27 6 0.6321 -3.2133 -11.2478 28 6 0.0869 -2.0732 -10.3853 29 8 0.7712 -4.0747 -2.3839 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6511 -2.9299 0.5048 32 1 -0.5598 -2.1483 -1.1317 33 1 2.6388 -4.0530 -0.5095 34 1 1.5528 -4.2423 0.9335 35 1 0.3180 -6.1372 -0.2845 36 1 -1.1214 -5.1181 0.0497 37 1 -1.8278 -5.1584 -2.2542 38 1 -1.0856 -6.7895 -2.1304 39 1 -0.8129 -5.8309 -4.7851 40 1 -1.0165 -4.1244 -4.3220 41 1 1.7068 -4.5628 -4.9280 42 1 3.4780 -4.0081 -6.1993 43 1 -0.4351 -4.0548 -9.4524 44 1 1.6623 -3.1333 -11.5945 45 1 -0.0596 -3.6989 -11.9361 46 1 -0.9635 -1.8087 -10.5062 47 1 0.7582 -1.2434 -10.1645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053658859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:10 Heat of formation + Delta-G solvation = 47.936685 kcal Electronic energy + Delta-G solvation = -30321.986038 eV Core-core repulsion = 26089.384854 eV Total energy + Delta-G solvation = -4232.601184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.01566 -41.41019 -40.54113 -38.51122 -38.08565 -35.73730 -34.37140 -34.11129 -33.17138 -32.89030 -30.73384 -28.77612 -26.50710 -26.38518 -25.40916 -24.81323 -23.39891 -23.06227 -22.51513 -21.76561 -21.11539 -20.55101 -19.41790 -18.78275 -18.73002 -17.82531 -17.69871 -17.05377 -16.96134 -16.50198 -16.14408 -16.11009 -15.92625 -15.43908 -15.20190 -15.00717 -14.96748 -14.45283 -14.19729 -14.04538 -13.57701 -13.25310 -13.18863 -13.11539 -12.80506 -12.78215 -12.62686 -12.60573 -12.48601 -12.37606 -12.29430 -12.18332 -11.64337 -11.54295 -11.31925 -11.26781 -11.18685 -10.89612 -10.88048 -10.60040 -10.18257 -10.15117 -8.92739 -7.93440 -5.23620 0.01957 0.60272 1.42456 1.44946 1.53937 1.80266 2.07720 2.21600 2.46059 2.71594 2.76395 2.91294 3.16958 3.30918 3.43009 3.67254 3.74091 3.74849 3.81384 3.84130 3.93147 3.99133 4.01755 4.03680 4.20525 4.48373 4.54736 4.55340 4.62526 4.63595 4.69524 4.78972 4.88048 4.89020 4.93730 5.00057 5.03136 5.06336 5.12024 5.15078 5.19840 5.27244 5.30235 5.37746 5.50193 5.90963 6.38889 6.39930 6.89341 7.05894 7.13450 7.59605 8.61368 9.26017 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.002834 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.231237 B = 9878.332880 C =11550.119572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.284 1.284 5 H -0.265 1.265 6 H -0.297 1.297 7 C -0.224 4.224 8 H 0.085 0.915 9 N -0.639 5.639 10 C 0.153 3.847 11 C 0.082 3.918 12 C 0.111 3.889 13 C -0.128 4.128 14 C -0.137 4.137 15 C 0.062 3.938 16 H 0.108 0.892 17 C 0.127 3.873 18 N -0.705 5.705 19 C 0.595 3.405 20 O -0.569 6.569 21 C -0.278 4.278 22 C 0.031 3.969 23 O 0.098 5.902 24 N -0.375 5.375 25 C 0.086 3.914 26 C -0.107 4.107 27 C -0.148 4.148 28 C -0.159 4.159 29 O -0.363 6.363 30 H 0.246 0.754 31 H 0.031 0.969 32 H 0.017 0.983 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.414 0.586 42 H 0.272 0.728 43 H 0.128 0.872 44 H 0.096 0.904 45 H 0.125 0.875 46 H 0.118 0.882 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 -17.115 -14.383 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.211 1.211 5 H -0.189 1.189 6 H -0.224 1.224 7 C -0.352 4.352 8 H 0.103 0.897 9 N -0.365 5.365 10 C 0.027 3.973 11 C 0.041 3.959 12 C -0.014 4.014 13 C -0.166 4.166 14 C -0.175 4.175 15 C 0.005 3.995 16 H 0.125 0.875 17 C 0.004 3.996 18 N -0.356 5.356 19 C 0.382 3.618 20 O -0.449 6.449 21 C -0.286 4.286 22 C -0.051 4.051 23 O 0.040 5.960 24 N -0.083 5.083 25 C -0.076 4.076 26 C -0.126 4.126 27 C -0.185 4.185 28 C -0.197 4.197 29 O -0.282 6.282 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.140 0.860 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.251 0.749 42 H 0.288 0.712 43 H 0.146 0.854 44 H 0.115 0.885 45 H 0.143 0.857 46 H 0.136 0.864 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.550 -16.253 -15.856 22.849 hybrid contribution -0.145 1.300 1.331 1.866 sum 2.405 -14.953 -14.525 20.984 Atomic orbital electron populations 1.70037 1.06608 1.25484 1.58344 1.25661 0.96517 1.01019 1.03166 0.85075 0.77903 0.79105 0.77386 1.21104 1.18948 1.22423 1.19318 0.90952 0.83064 1.41878 0.89717 1.45943 1.06642 1.00831 1.83041 1.22336 0.87901 0.91740 0.95344 1.22975 0.95836 0.95147 0.81924 1.22896 0.97532 0.84039 0.96912 1.22881 0.99722 0.95572 0.98442 1.23241 0.97360 1.04185 0.92709 1.23555 0.96770 0.87770 0.91387 0.87454 1.21600 0.88868 1.01165 0.87960 1.45635 1.12290 1.68666 1.08977 1.16978 0.86780 0.76394 0.81651 1.90757 1.23420 1.54662 1.76094 1.22231 0.95262 1.15955 0.95150 1.27231 0.90916 0.93257 0.93699 1.84560 1.33964 1.62826 1.14620 1.73606 1.02076 1.21268 1.11336 1.24135 0.93029 0.98308 0.92087 1.20395 0.94484 1.03833 0.93879 1.23107 1.03307 1.01294 0.90773 1.23082 1.03313 0.90818 1.02459 1.88383 1.77800 1.42473 1.19582 0.94483 0.95092 0.96445 0.92847 0.92084 0.87512 0.89610 0.90921 0.85976 0.87988 0.93341 0.74895 0.71213 0.85374 0.88513 0.85686 0.86353 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.96 11.82 21.65 0.26 -59.70 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.98 47.00 29.56 68.60 2.03 49.02 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 7 C -0.22 -12.88 10.73 84.04 0.90 -11.98 16 8 H 0.09 4.62 7.84 -2.91 -0.02 4.60 16 9 N -0.64 -33.39 3.77 -739.01 -2.79 -36.18 16 10 C 0.15 7.34 6.71 83.48 0.56 7.90 16 11 C 0.08 2.84 1.75 -10.67 -0.02 2.82 16 12 C 0.11 4.29 8.20 83.38 0.68 4.97 16 13 C -0.13 -2.87 6.39 31.68 0.20 -2.66 16 14 C -0.14 -2.47 6.58 32.14 0.21 -2.26 16 15 C 0.06 1.31 3.48 31.28 0.11 1.42 16 16 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 17 C 0.13 2.87 5.39 86.38 0.47 3.34 16 18 N -0.70 -15.59 5.53 -466.38 -2.58 -18.17 16 19 C 0.59 15.97 7.81 86.65 0.68 16.65 16 20 O -0.57 -19.11 15.81 -4.07 -0.06 -19.17 16 21 C -0.28 -6.56 6.47 -18.74 -0.12 -6.68 16 22 C 0.03 0.50 11.85 67.61 0.80 1.30 16 23 O 0.10 2.01 11.06 77.00 0.85 2.86 16 24 N -0.38 -9.27 11.71 -44.76 -0.52 -9.79 16 25 C 0.09 2.20 7.07 45.15 0.32 2.52 16 26 C -0.11 -2.50 5.90 -11.54 -0.07 -2.57 16 27 C -0.15 -2.64 10.16 30.60 0.31 -2.33 16 28 C -0.16 -3.19 10.23 30.59 0.31 -2.88 16 29 O -0.36 -12.10 10.84 -148.98 -1.62 -13.71 16 30 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.03 1.51 7.95 -2.39 -0.02 1.49 16 32 H 0.02 0.97 7.60 -2.39 -0.02 0.95 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.06 2.14 8.13 -2.39 -0.02 2.12 16 35 H 0.11 1.80 8.13 -2.39 -0.02 1.78 16 36 H 0.09 1.95 7.81 -2.39 -0.02 1.93 16 37 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 38 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.41 7.11 7.66 -92.72 -0.71 6.40 16 42 H 0.27 1.56 7.68 -2.91 -0.02 1.53 16 43 H 0.13 3.22 7.30 -2.39 -0.02 3.20 16 44 H 0.10 1.82 7.97 -2.39 -0.02 1.80 16 45 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -83.22 395.20 1.67 -81.55 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.29 Total: 17.43 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 5.81 Total: 5.86 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -5.63 Total: -123.84 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.83 Total: -30.03 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -83.22 1.67 -81.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053658859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.489 kcal (2) G-P(sol) polarization free energy of solvation -83.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds