Wall clock time and date at job start Wed Apr 1 2020 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00043 * 2 1 4 4 H 1.48501 * 109.46799 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46985 * 299.99905 * 3 2 1 6 6 H 1.48496 * 109.47155 * 59.99757 * 3 2 1 7 7 C 1.38807 * 119.99523 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99881 * 195.02005 * 7 2 1 9 9 N 1.37015 * 120.00520 * 15.02015 * 7 2 1 10 10 C 1.47737 * 121.48419 * 204.25953 * 9 7 2 11 11 C 1.53003 * 109.06910 * 261.36742 * 10 9 7 12 12 N 1.47647 * 108.66178 * 292.01162 * 11 10 9 13 13 C 1.36030 * 116.89162 * 120.35440 * 12 11 10 14 14 O 1.21302 * 120.75233 * 14.01196 * 13 12 11 15 15 C 1.50748 * 119.01044 * 193.71087 * 13 12 11 16 16 C 1.52915 * 109.57782 * 115.36887 * 15 13 12 17 17 N 1.47780 * 109.28173 * 289.26268 * 16 15 13 18 18 C 1.34791 * 121.56735 * 264.70900 * 17 16 15 19 19 O 1.21776 * 120.00112 * 180.55268 * 18 17 16 20 20 C 1.41549 * 119.99821 * 0.55459 * 18 17 16 21 21 C 1.35632 * 120.00140 * 179.97438 * 20 18 17 22 22 C 1.41599 * 120.00230 * 180.02562 * 21 20 18 23 23 C 1.37956 * 126.10479 * 179.71628 * 22 21 20 24 24 C 1.40311 * 106.52699 * 179.84903 * 23 22 21 25 25 C 1.35150 * 107.20757 * 0.41368 * 24 23 22 26 26 O 1.34020 * 109.03438 * 359.73902 * 25 24 23 27 27 C 1.47809 * 116.65194 * 85.23964 * 17 16 15 28 28 C 1.47790 * 121.67304 * 23.89634 * 9 7 2 29 29 H 0.97004 * 119.99680 * 0.02562 * 1 2 3 30 30 H 1.09066 * 109.48779 * 21.19446 * 10 9 7 31 31 H 1.09014 * 109.66912 * 141.39908 * 10 9 7 32 32 H 1.08923 * 109.56690 * 52.13984 * 11 10 9 33 33 H 1.09067 * 109.60456 * 172.32129 * 11 10 9 34 34 H 0.97094 * 121.39916 * 301.82198 * 12 11 10 35 35 H 1.08959 * 109.45184 * 354.98585 * 15 13 12 36 36 H 1.09094 * 109.33631 * 235.29303 * 15 13 12 37 37 H 1.09091 * 109.48889 * 169.44416 * 16 15 13 38 38 H 1.09047 * 109.76787 * 49.41224 * 16 15 13 39 39 H 1.08001 * 120.00136 * 0.02562 * 20 18 17 40 40 H 1.07999 * 119.99606 * 359.97438 * 21 20 18 41 41 H 1.07992 * 126.73071 * 359.97438 * 23 22 21 42 42 H 1.08003 * 126.39948 * 180.14984 * 24 23 22 43 43 H 1.08004 * 125.48368 * 179.72599 * 25 24 23 44 44 H 1.09134 * 109.25385 * 119.45738 * 27 17 16 45 45 H 1.09006 * 109.19068 * 359.76092 * 27 17 16 46 46 H 1.08985 * 109.36874 * 174.70813 * 28 9 7 47 47 H 1.09167 * 109.28476 * 294.42701 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0625 -1.2181 0.2429 9 7 1.3602 -2.3686 -0.3064 10 6 1.8557 -3.6764 0.1698 11 6 2.6507 -4.3483 -0.9516 12 7 1.7197 -4.7114 -2.0385 13 6 1.9565 -4.1627 -3.2605 14 8 3.0154 -3.6232 -3.5035 15 6 0.8837 -4.2397 -4.3168 16 6 0.3965 -2.8305 -4.6560 17 7 -0.3819 -2.2964 -3.5190 18 6 -1.7260 -2.3900 -3.4780 19 8 -2.3397 -1.9310 -2.5317 20 6 -2.4239 -3.0217 -4.5351 21 6 -3.7763 -3.1163 -4.4937 22 6 -4.4745 -3.7488 -5.5508 23 6 -5.8409 -3.9190 -5.6354 24 6 -6.0858 -4.5877 -6.8443 25 6 -4.8879 -4.8028 -7.4320 26 8 -3.9217 -4.2977 -6.6526 27 6 0.3864 -1.6452 -2.4372 28 6 0.1275 -2.3787 -1.1217 29 1 -0.4850 0.8401 -0.0004 30 1 2.5019 -3.5272 1.0357 31 1 1.0127 -4.3088 0.4488 32 1 3.4074 -3.6597 -1.3254 33 1 3.1341 -5.2480 -0.5692 34 1 0.9617 -5.2974 -1.8807 35 1 0.0516 -4.8375 -3.9460 36 1 1.2925 -4.7078 -5.2134 37 1 -0.2372 -2.8682 -5.5432 38 1 1.2511 -2.1815 -4.8498 39 1 -1.8796 -3.4292 -5.3742 40 1 -4.3206 -2.7100 -3.6540 41 1 -6.5776 -3.5985 -4.9137 42 1 -7.0509 -4.8801 -7.2309 43 1 -4.7340 -5.3017 -8.3774 44 1 0.0679 -0.6054 -2.3452 45 1 1.4483 -1.6796 -2.6810 46 1 -0.1656 -3.4094 -1.3209 47 1 -0.6709 -1.8743 -0.5743 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070932624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:42 Heat of formation + Delta-G solvation = -12.889241 kcal Electronic energy + Delta-G solvation = -31965.780824 eV Core-core repulsion = 27730.542030 eV Total energy + Delta-G solvation = -4235.238794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.44423 -41.33415 -40.25737 -37.88053 -36.83837 -35.40903 -35.11972 -33.94170 -33.19803 -31.98705 -31.21034 -29.78539 -28.39647 -26.45660 -25.15515 -24.88073 -23.27005 -22.72142 -22.06742 -21.27808 -21.12154 -19.45773 -18.88476 -18.47894 -18.06922 -17.76898 -17.36157 -17.00366 -16.67659 -16.52913 -16.40862 -15.83087 -15.53568 -15.43619 -15.16055 -14.81349 -14.48051 -14.31518 -14.02224 -13.90890 -13.79315 -13.65515 -13.46591 -13.30408 -13.20757 -13.02292 -12.84996 -12.70799 -12.50446 -12.36015 -12.13695 -11.92312 -11.81942 -11.64217 -11.49448 -10.85021 -10.79892 -10.78316 -10.64843 -9.94067 -9.68736 -8.89917 -8.61957 -7.66448 -5.27935 -0.52239 1.22960 1.40530 1.43884 1.52554 1.68554 1.78099 2.05133 2.10030 2.50594 2.51534 2.54564 3.34734 3.57745 3.67748 3.82085 4.01112 4.03371 4.09959 4.15297 4.23245 4.33106 4.36218 4.45033 4.52382 4.59573 4.66904 4.67973 4.76379 4.78451 4.85387 4.94287 4.96408 5.00686 5.07436 5.14851 5.23315 5.29890 5.32932 5.58341 5.60555 5.61010 5.72181 5.98858 6.13704 6.34505 6.62956 6.74126 7.16228 7.31827 7.39195 7.87134 8.39670 9.22330 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012819 B = 0.003410 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.810206 B = 8209.953109 C = 9420.401624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.044 4.044 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.298 1.298 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.064 0.936 9 N -0.608 5.608 10 C 0.124 3.876 11 C 0.098 3.902 12 N -0.720 5.720 13 C 0.516 3.484 14 O -0.586 6.586 15 C -0.150 4.150 16 C 0.112 3.888 17 N -0.614 5.614 18 C 0.540 3.460 19 O -0.581 6.581 20 C -0.213 4.213 21 C 0.019 3.981 22 C -0.037 4.037 23 C -0.162 4.162 24 C -0.232 4.232 25 C -0.008 4.008 26 O -0.177 6.177 27 C 0.145 3.855 28 C 0.182 3.818 29 H 0.242 0.758 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.413 0.587 35 H 0.103 0.897 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.166 0.834 42 H 0.177 0.823 43 H 0.246 0.754 44 H 0.025 0.975 45 H 0.055 0.945 46 H 0.037 0.963 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.505 -16.202 -17.163 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.241 4.241 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.332 5.332 10 C -0.003 4.003 11 C -0.028 4.028 12 N -0.373 5.373 13 C 0.304 3.696 14 O -0.466 6.466 15 C -0.191 4.191 16 C -0.010 4.010 17 N -0.347 5.347 18 C 0.334 3.666 19 O -0.464 6.464 20 C -0.233 4.233 21 C -0.001 4.001 22 C -0.086 4.086 23 C -0.181 4.181 24 C -0.251 4.251 25 C -0.076 4.076 26 O -0.073 6.073 27 C 0.021 3.979 28 C 0.056 3.944 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.250 0.750 35 H 0.121 0.879 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.090 0.910 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.184 0.816 42 H 0.194 0.806 43 H 0.262 0.738 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.854 -15.432 -16.823 24.485 hybrid contribution 0.036 1.332 0.603 1.462 sum -8.817 -14.100 -16.220 23.230 Atomic orbital electron populations 1.70178 1.05938 1.24633 1.55116 1.25565 0.95768 1.00398 1.02348 0.85491 0.78799 0.81466 0.76566 1.19374 1.22523 1.21851 1.19270 0.91980 0.85472 1.41210 0.91823 1.44771 1.28767 1.01743 1.57914 1.21650 0.97063 0.86532 0.95011 1.22269 0.92745 0.99520 0.88313 1.46432 1.31604 1.49910 1.09360 1.21374 0.87884 0.76129 0.84177 1.90664 1.28663 1.46229 1.81041 1.22236 0.98025 0.99160 0.99647 1.21997 0.96584 0.93204 0.89235 1.48952 1.05937 1.57615 1.22162 1.17482 0.81732 0.80133 0.87266 1.90895 1.67663 1.50273 1.37528 1.22074 0.95355 1.05588 1.00264 1.20655 0.94072 0.91534 0.93849 1.19756 0.92395 1.06451 0.89970 1.22758 0.94314 1.01182 0.99882 1.22165 1.00743 1.05728 0.96451 1.25223 0.85465 0.99273 0.97686 1.84093 1.37799 1.57681 1.27690 1.21900 0.92957 0.95445 0.87561 1.20972 0.89146 0.94757 0.89535 0.94859 0.91855 0.93170 0.92285 0.89328 0.74965 0.87894 0.84421 0.85547 0.90992 0.82573 0.83435 0.81618 0.80556 0.73765 0.95666 0.92685 0.94432 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.14 9.74 21.65 0.21 -55.93 16 2 C -0.04 -2.57 4.55 84.86 0.39 -2.18 16 3 Si 0.95 47.45 29.58 68.60 2.03 49.48 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 6 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 7 C -0.25 -13.91 9.23 84.02 0.78 -13.14 16 8 H 0.06 3.53 7.87 -2.91 -0.02 3.51 16 9 N -0.61 -30.35 2.71 -695.47 -1.88 -32.23 16 10 C 0.12 4.80 6.02 86.14 0.52 5.32 16 11 C 0.10 3.25 6.65 86.16 0.57 3.82 16 12 N -0.72 -21.21 3.81 -458.74 -1.75 -22.96 16 13 C 0.52 16.51 5.21 87.47 0.46 16.96 16 14 O -0.59 -24.04 16.03 -3.10 -0.05 -24.09 16 15 C -0.15 -3.32 6.07 29.84 0.18 -3.14 16 16 C 0.11 2.94 5.39 86.11 0.46 3.40 16 17 N -0.61 -22.29 2.60 -825.90 -2.15 -24.44 16 18 C 0.54 19.80 7.22 85.06 0.61 20.42 16 19 O -0.58 -27.42 15.23 -4.59 -0.07 -27.49 16 20 C -0.21 -5.53 8.75 22.48 0.20 -5.33 16 21 C 0.02 0.46 9.39 22.50 0.21 0.67 16 22 C -0.04 -0.75 6.84 23.03 0.16 -0.59 16 23 C -0.16 -2.67 10.90 22.71 0.25 -2.43 16 24 C -0.23 -2.75 10.87 22.06 0.24 -2.51 16 25 C -0.01 -0.08 12.06 67.11 0.81 0.73 16 26 O -0.18 -3.06 10.18 -6.14 -0.06 -3.12 16 27 C 0.15 6.93 4.04 86.07 0.35 7.28 16 28 C 0.18 8.99 3.67 86.07 0.32 9.30 16 29 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.06 2.43 8.04 -2.35 -0.02 2.41 16 31 H 0.05 1.79 8.03 -2.38 -0.02 1.77 16 32 H 0.06 2.43 6.82 -2.43 -0.02 2.41 16 33 H 0.09 2.31 8.15 -2.35 -0.02 2.29 16 34 H 0.41 9.77 8.59 -92.64 -0.80 8.97 16 35 H 0.10 1.89 7.95 -2.41 -0.02 1.87 16 36 H 0.14 2.12 8.15 -2.34 -0.02 2.10 16 37 H 0.13 2.27 6.02 -2.34 -0.01 2.26 16 38 H 0.07 2.15 7.72 -2.36 -0.02 2.14 16 39 H 0.16 3.04 5.77 -2.91 -0.02 3.02 16 40 H 0.15 3.90 7.46 -2.91 -0.02 3.88 16 41 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.25 0.27 8.06 -2.91 -0.02 0.25 16 44 H 0.02 1.43 6.94 -2.32 -0.02 1.42 16 45 H 0.05 2.80 6.37 -2.38 -0.02 2.79 16 46 H 0.04 1.66 6.41 -2.39 -0.02 1.64 16 47 H 0.04 2.36 5.91 -2.30 -0.01 2.35 16 Total: -1.00 -83.18 376.75 2.99 -80.19 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.22 Total: 21.99 kcal Atomic # 6 Polarization: 32.11 SS G_CDS: 6.49 Total: 38.60 kcal Atomic # 7 Polarization: -129.99 SS G_CDS: -5.57 Total: -135.56 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: -0.18 Total: -54.70 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -83.18 2.99 -80.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070932624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.298 kcal (2) G-P(sol) polarization free energy of solvation -83.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds