Wall clock time and date at job start Wed Apr 1 2020 04:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99642 * 2 1 4 4 H 1.48501 * 109.47157 * 239.99637 * 3 2 1 5 5 H 1.48499 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46822 * 120.00368 * 3 2 1 7 7 C 1.38816 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00050 * 163.48446 * 7 2 1 9 9 N 1.36940 * 119.99393 * 343.47623 * 7 2 1 10 10 C 1.47167 * 121.21090 * 333.50060 * 9 7 2 11 11 C 1.53229 * 108.70329 * 230.92960 * 10 9 7 12 12 O 1.43087 * 109.41158 * 308.36447 * 11 10 9 13 13 C 1.42675 * 113.87547 * 61.68998 * 12 11 10 14 14 H 1.09001 * 108.88369 * 55.59631 * 13 12 11 15 15 C 1.52488 * 110.68229 * 174.57652 * 13 12 11 16 16 C 1.53586 * 109.76628 * 61.43310 * 15 13 12 17 17 N 1.46996 * 108.21322 * 54.71143 * 16 15 13 18 18 C 1.34775 * 120.73806 * 125.38912 * 17 16 15 19 19 O 1.21278 * 119.99638 * 179.71785 * 18 17 16 20 20 C 1.50696 * 120.00140 * 359.70987 * 18 17 16 21 21 C 1.50702 * 109.47171 * 180.02562 * 20 18 17 22 22 C 1.38826 * 120.35469 * 90.00172 * 21 20 18 23 23 C 1.38381 * 118.48860 * 179.97438 * 22 21 20 24 24 C 1.38918 * 119.10780 * 359.97438 * 23 22 21 25 25 O 1.35673 * 119.68286 * 180.02562 * 24 23 22 26 26 N 1.32244 * 120.63295 * 0.02776 * 24 23 22 27 27 C 1.31969 * 121.64720 * 359.67695 * 26 24 23 28 28 C 1.46797 * 118.51699 * 305.10272 * 17 16 15 29 29 C 1.47582 * 121.20111 * 153.52015 * 9 7 2 30 30 H 1.09003 * 110.28179 * 6.88065 * 29 9 7 31 31 H 0.96996 * 120.00397 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.59844 * 350.69261 * 10 9 7 33 33 H 1.08997 * 109.59838 * 111.16328 * 10 9 7 34 34 H 1.09004 * 109.48189 * 68.34776 * 11 10 9 35 35 H 1.09000 * 109.47901 * 188.38446 * 11 10 9 36 36 H 1.09001 * 109.40796 * 181.67247 * 15 13 12 37 37 H 1.08996 * 109.40651 * 301.51884 * 15 13 12 38 38 H 1.08994 * 109.78988 * 295.07443 * 16 15 13 39 39 H 1.08995 * 109.72328 * 174.30339 * 16 15 13 40 40 H 1.09004 * 109.47283 * 60.00751 * 20 18 17 41 41 H 1.08995 * 109.47447 * 300.00134 * 20 18 17 42 42 H 1.08008 * 120.75769 * 359.97438 * 22 21 20 43 43 H 1.07997 * 120.44417 * 179.97438 * 23 22 21 44 44 H 0.96708 * 114.00196 * 90.00437 * 25 24 23 45 45 H 1.08001 * 119.58691 * 180.31025 * 27 26 24 46 46 H 1.09000 * 109.52261 * 174.51641 * 28 17 16 47 47 H 1.08999 * 109.52740 * 294.64503 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0568 -1.2213 -0.2664 9 7 1.3679 -2.3637 0.3363 10 6 0.1932 -2.3561 1.2227 11 6 0.4165 -3.3772 2.3431 12 8 0.7803 -4.6378 1.7721 13 6 1.9954 -4.6042 1.0250 14 1 2.7914 -4.2207 1.6633 15 6 2.3830 -6.0050 0.5639 16 6 1.2899 -6.5705 -0.3549 17 7 1.0694 -5.6141 -1.4492 18 6 1.1560 -6.0071 -2.7354 19 8 0.9665 -5.2079 -3.6277 20 6 1.4884 -7.4395 -3.0649 21 6 1.5243 -7.6155 -4.5612 22 6 2.7077 -7.4258 -5.2617 23 6 2.6969 -7.5981 -6.6347 24 6 1.5093 -7.9535 -7.2618 25 8 1.4855 -8.1259 -8.6073 26 7 0.4018 -8.1252 -6.5599 27 6 0.3823 -7.9737 -5.2491 28 6 0.7466 -4.2229 -1.1097 29 6 1.8290 -3.6686 -0.1763 30 1 2.7691 -3.5520 -0.7155 31 1 -0.4850 0.8400 0.0004 32 1 0.0665 -1.3627 1.6533 33 1 -0.6961 -2.6265 0.6534 34 1 1.2162 -3.0301 2.9973 35 1 -0.5016 -3.4908 2.9197 36 1 3.3276 -5.9595 0.0219 37 1 2.4947 -6.6542 1.4323 38 1 0.3661 -6.7021 0.2084 39 1 1.6124 -7.5277 -0.7644 40 1 0.7290 -8.0958 -2.6397 41 1 2.4626 -7.6920 -2.6463 42 1 3.6162 -7.1501 -4.7469 43 1 3.5995 -7.4582 -7.2109 44 1 1.6782 -9.0300 -8.8915 45 1 -0.5398 -8.1272 -4.7082 46 1 0.7098 -3.6249 -2.0202 47 1 -0.2212 -4.1850 -0.6097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074299989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:38 Heat of formation + Delta-G solvation = -74.421312 kcal Electronic energy + Delta-G solvation = -31261.674846 eV Core-core repulsion = 27023.767822 eV Total energy + Delta-G solvation = -4237.907025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.75393 -41.19778 -39.97872 -38.10996 -37.07729 -36.44276 -34.32023 -33.49387 -33.04520 -32.61048 -31.04705 -29.49157 -28.33037 -25.98771 -25.60952 -24.72260 -24.43129 -23.35845 -22.86002 -20.83904 -19.80589 -19.61466 -18.90170 -18.21776 -17.96149 -17.26895 -17.08788 -16.93273 -16.76753 -16.50588 -16.19805 -15.98525 -15.62517 -15.35439 -15.12258 -14.88509 -14.74160 -14.34499 -14.16985 -13.99234 -13.92807 -13.60756 -13.36876 -13.25568 -13.08294 -12.84956 -12.76082 -12.62139 -12.52676 -12.40954 -12.20876 -12.14303 -11.84791 -11.64743 -11.19953 -10.98880 -10.77456 -10.71996 -10.51438 -10.43280 -9.74359 -9.64784 -8.71137 -7.94278 -5.41724 -0.02377 0.27124 1.42936 1.44024 1.51411 1.68413 2.02487 2.44871 2.60644 2.79994 2.92242 3.20360 3.46542 3.59247 3.71074 3.76574 3.95009 3.96171 4.04508 4.08094 4.17851 4.24089 4.30115 4.36070 4.45945 4.55358 4.56844 4.58608 4.68003 4.72472 4.78148 4.85738 4.89755 4.94503 5.00281 5.02583 5.09466 5.24060 5.26807 5.35125 5.49557 5.57783 5.58870 5.60766 6.25401 6.36889 6.55380 6.63941 6.94028 7.02925 7.25306 7.70689 8.24339 9.10328 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.002834 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.096038 B = 9878.580703 C =11262.583525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.047 4.047 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.267 4.267 8 H 0.067 0.933 9 N -0.604 5.604 10 C 0.145 3.855 11 C 0.053 3.947 12 O -0.381 6.381 13 C 0.084 3.916 14 H 0.047 0.953 15 C -0.116 4.116 16 C 0.107 3.893 17 N -0.605 5.605 18 C 0.504 3.496 19 O -0.597 6.597 20 C -0.082 4.082 21 C -0.130 4.130 22 C -0.051 4.051 23 C -0.186 4.186 24 C 0.288 3.712 25 O -0.496 6.496 26 N -0.537 5.537 27 C 0.121 3.879 28 C 0.125 3.875 29 C 0.133 3.867 30 H 0.062 0.938 31 H 0.251 0.749 32 H 0.065 0.935 33 H -0.001 1.001 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.419 0.581 45 H 0.170 0.830 46 H 0.036 0.964 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -23.885 -1.412 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.797 3.203 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.327 5.327 10 C 0.019 3.981 11 C -0.025 4.025 12 O -0.300 6.300 13 C 0.024 3.976 14 H 0.065 0.935 15 C -0.154 4.154 16 C -0.014 4.014 17 N -0.337 5.337 18 C 0.294 3.706 19 O -0.478 6.478 20 C -0.121 4.121 21 C -0.133 4.133 22 C -0.076 4.076 23 C -0.207 4.207 24 C 0.109 3.891 25 O -0.306 6.306 26 N -0.256 5.256 27 C -0.035 4.035 28 C -0.001 4.001 29 C 0.025 3.975 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.017 0.983 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.153 0.847 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.181 0.819 43 H 0.180 0.820 44 H 0.279 0.721 45 H 0.187 0.813 46 H 0.055 0.945 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.398 -23.123 -2.363 24.108 hybrid contribution 0.644 2.012 -0.129 2.117 sum 7.042 -21.110 -2.492 22.393 Atomic orbital electron populations 1.70167 1.06633 1.26112 1.54832 1.25816 0.96087 1.01555 1.00821 0.85322 0.77580 0.79050 0.78362 1.20577 1.21946 1.19792 1.19426 0.92641 0.85583 1.42021 0.91555 1.44535 1.33628 1.01691 1.52838 1.21289 0.87845 0.98416 0.90552 1.23136 1.00419 0.84090 0.94816 1.87728 1.41985 1.31122 1.69135 1.22265 0.86591 0.97074 0.91643 0.93468 1.21954 0.99212 0.93219 1.01066 1.22162 0.99634 0.92361 0.87273 1.48347 1.68907 1.09989 1.06481 1.21433 0.76064 0.91581 0.81487 1.90737 1.52329 1.56966 1.47728 1.20706 1.08248 0.91551 0.91629 1.20550 0.94713 1.01001 0.97005 1.21768 0.99092 0.93180 0.93580 1.22314 0.99086 1.03571 0.95735 1.19477 0.88663 0.96444 0.84487 1.84750 1.93402 1.36609 1.15838 1.67120 1.30849 1.18067 1.09549 1.22668 0.98546 0.94223 0.88094 1.21661 0.98696 0.81969 0.97743 1.21751 0.95640 0.86326 0.93769 0.91977 0.93949 0.91671 0.98266 0.93603 0.87444 0.88624 0.86945 0.90639 0.84720 0.83990 0.83501 0.81947 0.82030 0.72064 0.81314 0.94546 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.59 11.14 21.65 0.24 -55.35 16 2 C -0.05 -2.64 4.96 84.86 0.42 -2.22 16 3 Si 0.97 45.32 29.58 68.60 2.03 47.35 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.27 -14.77 9.69 84.03 0.81 -13.96 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 9 N -0.60 -30.13 2.71 -672.47 -1.82 -31.95 16 10 C 0.14 6.89 4.93 86.33 0.43 7.31 16 11 C 0.05 1.93 6.98 72.06 0.50 2.43 16 12 O -0.38 -12.65 9.62 -148.98 -1.43 -14.09 16 13 C 0.08 2.60 2.71 30.48 0.08 2.68 16 14 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 15 C -0.12 -2.18 5.83 30.62 0.18 -2.00 16 16 C 0.11 1.87 6.21 86.48 0.54 2.41 16 17 N -0.60 -17.24 2.95 -818.11 -2.42 -19.66 16 18 C 0.50 14.36 7.69 87.66 0.67 15.03 16 19 O -0.60 -24.63 15.45 -3.02 -0.05 -24.68 16 20 C -0.08 -1.20 4.20 29.10 0.12 -1.08 16 21 C -0.13 -2.60 4.39 -19.77 -0.09 -2.68 16 22 C -0.05 -0.94 9.85 22.44 0.22 -0.72 16 23 C -0.19 -3.64 10.04 22.47 0.23 -3.41 16 24 C 0.29 6.88 7.74 84.79 0.66 7.53 16 25 O -0.50 -10.16 13.56 -89.90 -1.22 -11.38 16 26 N -0.54 -14.54 10.39 -308.96 -3.21 -17.75 16 27 C 0.12 2.81 10.85 84.63 0.92 3.73 16 28 C 0.12 5.12 5.63 86.42 0.49 5.61 16 29 C 0.13 5.40 3.02 44.94 0.14 5.53 16 30 H 0.06 2.62 7.99 -2.39 -0.02 2.61 16 31 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.06 3.48 6.14 -2.39 -0.01 3.47 16 33 H 0.00 -0.04 7.18 -2.39 -0.02 -0.06 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 35 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.44 7.96 -2.39 -0.02 1.42 16 39 H 0.13 0.95 5.95 -2.39 -0.01 0.93 16 40 H 0.14 1.13 7.87 -2.38 -0.02 1.11 16 41 H 0.15 1.00 7.68 -2.39 -0.02 0.98 16 42 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 43 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 44 H 0.42 3.65 9.06 -74.05 -0.67 2.98 16 45 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 46 H 0.04 1.85 7.00 -2.39 -0.02 1.83 16 47 H 0.05 2.04 6.60 -2.39 -0.02 2.03 16 Total: -1.00 -85.15 375.95 -1.23 -86.38 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.33 Total: 14.94 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: 6.32 Total: 26.20 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -7.21 Total: -124.72 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -2.70 Total: -50.15 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -85.15 -1.23 -86.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074299989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.957 kcal (2) G-P(sol) polarization free energy of solvation -85.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds