Wall clock time and date at job start Wed Apr 1 2020 04:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99962 * 2 1 4 4 H 1.48499 * 109.46904 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46937 * 299.99857 * 3 2 1 6 6 H 1.48502 * 109.47068 * 60.00172 * 3 2 1 7 7 C 1.38814 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00070 * 194.17773 * 7 2 1 9 9 N 1.36943 * 119.99687 * 13.89573 * 7 2 1 10 10 C 1.47352 * 121.29891 * 27.41538 * 9 7 2 11 11 C 1.53197 * 108.79047 * 129.72389 * 10 9 7 12 12 O 1.43145 * 109.73772 * 51.22186 * 11 10 9 13 13 C 1.42592 * 113.63990 * 298.30481 * 12 11 10 14 14 H 1.09001 * 109.34578 * 304.38422 * 13 12 11 15 15 C 1.52793 * 111.11697 * 183.59190 * 13 12 11 16 16 C 1.53370 * 108.81147 * 177.45364 * 15 13 12 17 17 N 1.46832 * 109.25273 * 53.82852 * 16 15 13 18 18 C 1.34776 * 120.40698 * 127.78773 * 17 16 15 19 19 O 1.21288 * 120.00317 * 180.02562 * 18 17 16 20 20 C 1.50702 * 120.00302 * 359.97438 * 18 17 16 21 21 C 1.50698 * 109.47854 * 180.02562 * 20 18 17 22 22 C 1.38827 * 120.35431 * 269.73136 * 21 20 18 23 23 C 1.38380 * 118.48410 * 179.73209 * 22 21 20 24 24 C 1.38920 * 119.10847 * 0.53513 * 23 22 21 25 25 O 1.35682 * 119.68262 * 179.75128 * 24 23 22 26 26 N 1.32249 * 120.63264 * 359.72145 * 24 23 22 27 27 C 1.31963 * 121.64641 * 0.02562 * 26 24 23 28 28 C 1.47130 * 119.18872 * 307.76581 * 17 16 15 29 29 C 1.46863 * 121.30126 * 207.12514 * 9 7 2 30 30 H 1.09007 * 109.64936 * 112.36734 * 29 9 7 31 31 H 0.96996 * 119.99897 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.58349 * 249.51328 * 10 9 7 33 33 H 1.08995 * 109.58497 * 9.79263 * 10 9 7 34 34 H 1.09000 * 109.42877 * 171.30638 * 11 10 9 35 35 H 1.09004 * 109.42830 * 291.19596 * 11 10 9 36 36 H 1.08996 * 109.58601 * 297.25568 * 15 13 12 37 37 H 1.09000 * 109.57858 * 57.52185 * 15 13 12 38 38 H 1.09005 * 109.50478 * 173.76490 * 16 15 13 39 39 H 1.08999 * 109.50920 * 293.89397 * 16 15 13 40 40 H 1.09001 * 109.46941 * 300.00511 * 20 18 17 41 41 H 1.08999 * 109.47126 * 59.99480 * 20 18 17 42 42 H 1.08000 * 120.75805 * 359.96146 * 22 21 20 43 43 H 1.07998 * 120.44515 * 180.27356 * 23 22 21 44 44 H 0.96699 * 113.99663 * 269.96835 * 25 24 23 45 45 H 1.08005 * 119.58224 * 179.97438 * 27 26 24 46 46 H 1.08996 * 109.72972 * 172.88807 * 28 17 16 47 47 H 1.08997 * 109.72376 * 293.55985 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0656 -1.2164 0.2285 9 7 1.3557 -2.3706 -0.2859 10 6 0.1565 -2.3868 -1.1421 11 6 0.3392 -3.4529 -2.2270 12 8 0.7166 -4.6956 -1.6250 13 6 1.9562 -4.6376 -0.9227 14 1 2.7360 -4.2806 -1.5955 15 6 2.3461 -6.0116 -0.3799 16 6 3.7126 -5.9020 0.3078 17 7 3.6651 -4.8314 1.3115 18 6 4.0526 -5.0682 2.5805 19 8 4.0099 -4.1786 3.4037 20 6 4.5379 -6.4388 2.9768 21 6 4.9067 -6.4382 4.4380 22 6 6.2004 -6.1283 4.8349 23 6 6.4951 -6.1339 6.1870 24 6 5.4953 -6.4585 7.0952 25 8 5.7728 -6.4725 8.4233 26 7 4.2755 -6.7533 6.6778 27 6 3.9631 -6.7515 5.3957 28 6 3.1897 -3.4967 0.9149 29 6 1.8250 -3.6573 0.2443 30 1 1.1026 -4.0426 0.9639 31 1 -0.4850 0.8400 -0.0004 32 1 -0.7196 -2.6256 -0.5392 33 1 0.0255 -1.4093 -1.6059 34 1 -0.5973 -3.5824 -2.7694 35 1 1.1185 -3.1352 -2.9199 36 1 1.5999 -6.3447 0.3414 37 1 2.4045 -6.7257 -1.2012 38 1 3.9517 -6.8474 0.7950 39 1 4.4763 -5.6712 -0.4348 40 1 3.7474 -7.1687 2.8023 41 1 5.4123 -6.7009 2.3812 42 1 6.9586 -5.8848 4.1054 43 1 7.4901 -5.8934 6.5312 44 1 6.0784 -7.3290 8.7522 45 1 2.9564 -6.9979 5.0918 46 1 3.0980 -2.8619 1.7962 47 1 3.8918 -3.0503 0.2107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074299991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:48 Heat of formation + Delta-G solvation = -45.350253 kcal Electronic energy + Delta-G solvation = -31156.586733 eV Core-core repulsion = 26919.940324 eV Total energy + Delta-G solvation = -4236.646409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.83701 -40.04893 -38.64967 -37.32152 -36.09445 -34.75149 -33.44315 -32.16912 -31.61171 -31.40118 -29.93927 -27.98204 -26.83519 -25.04141 -23.97453 -23.93651 -22.80197 -21.99077 -21.30366 -19.74127 -19.04241 -18.91670 -17.26312 -17.15234 -16.91358 -16.27536 -15.74752 -15.64480 -15.44491 -15.13409 -14.90943 -14.57193 -14.42040 -14.00774 -13.87424 -13.65938 -13.41831 -13.14572 -13.05496 -12.89490 -12.77926 -12.57604 -12.44154 -11.96832 -11.92879 -11.82305 -11.37921 -11.03960 -11.00089 -10.86052 -10.63623 -10.28900 -10.21764 -10.09339 -10.01654 -9.73593 -9.63901 -9.59436 -9.02899 -8.93273 -8.56961 -8.42038 -6.75989 -5.85822 -3.31863 0.76828 1.05085 2.71266 3.03346 3.33279 3.33774 3.41981 3.43485 3.60989 4.19197 4.34212 4.41031 4.49099 4.58711 4.66615 4.74137 4.82540 5.03618 5.11687 5.16608 5.23170 5.31327 5.35231 5.36336 5.48304 5.50458 5.64243 5.70588 5.73557 5.85171 5.88974 5.98699 6.06416 6.10471 6.20467 6.29845 6.29999 6.42374 6.59975 6.66112 6.83236 7.10697 7.25409 7.49565 7.53287 7.68876 7.73459 7.85811 8.28566 8.31265 9.07920 9.70966 10.28027 11.22231 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.002938 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.697476 B = 9527.925772 C =11058.404331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.258 4.258 8 H 0.073 0.927 9 N -0.588 5.588 10 C 0.142 3.858 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.077 3.923 14 H 0.052 0.948 15 C -0.125 4.125 16 C 0.111 3.889 17 N -0.611 5.611 18 C 0.512 3.488 19 O -0.529 6.529 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.046 4.046 23 C -0.184 4.184 24 C 0.304 3.696 25 O -0.483 6.483 26 N -0.501 5.501 27 C 0.140 3.860 28 C 0.124 3.876 29 C 0.137 3.863 30 H 0.035 0.965 31 H 0.255 0.745 32 H 0.027 0.973 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.397 0.603 45 H 0.159 0.841 46 H 0.102 0.898 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.029 -18.718 2.731 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.039 4.039 12 O -0.308 6.308 13 C 0.017 3.983 14 H 0.070 0.930 15 C -0.163 4.163 16 C -0.013 4.013 17 N -0.346 5.346 18 C 0.299 3.701 19 O -0.405 6.405 20 C -0.137 4.137 21 C -0.126 4.126 22 C -0.072 4.072 23 C -0.205 4.205 24 C 0.126 3.874 25 O -0.290 6.290 26 N -0.220 5.220 27 C -0.017 4.017 28 C 0.003 3.997 29 C 0.029 3.971 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.255 0.745 45 H 0.176 0.824 46 H 0.120 0.880 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.037 -17.829 3.833 21.316 hybrid contribution 1.112 0.990 -0.609 1.609 sum 12.149 -16.839 3.224 21.013 Atomic orbital electron populations 1.70006 1.05274 1.25576 1.53709 1.25083 0.95373 0.98464 1.00383 0.86190 0.79327 0.83743 0.77349 1.20160 1.21495 1.21524 1.19182 0.91902 0.83843 1.43733 0.90986 1.44025 1.31380 1.01103 1.54779 1.21465 0.88575 0.97879 0.90468 1.23342 0.98830 0.85417 0.96273 1.87737 1.38957 1.33517 1.70612 1.22323 0.86710 0.94896 0.94391 0.93041 1.21846 0.96635 0.97245 1.00619 1.21722 0.97480 0.90587 0.91465 1.48288 1.64615 1.12608 1.09042 1.20390 0.78012 0.89868 0.81833 1.90768 1.53710 1.46348 1.49640 1.20631 1.03661 0.96538 0.92907 1.20329 0.94783 1.01605 0.95844 1.21352 0.96160 0.94122 0.95566 1.22042 1.00684 1.04441 0.93320 1.19195 0.88325 0.95604 0.84295 1.84813 1.87443 1.37295 1.19409 1.67163 1.20488 1.15714 1.18591 1.22362 0.99107 0.94070 0.86186 1.21749 0.94979 0.81742 1.01259 1.21191 0.94036 0.88695 0.93201 0.94694 0.93507 0.95441 0.88442 0.90046 0.94127 0.90772 0.90174 0.89499 0.91076 0.87416 0.87669 0.84399 0.84216 0.74547 0.82366 0.87960 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 11.06 55.49 0.61 -25.21 16 2 C 0.01 0.16 5.02 -17.43 -0.09 0.08 16 3 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.26 -6.84 8.89 -15.06 -0.13 -6.97 16 8 H 0.07 1.87 6.26 -52.49 -0.33 1.54 16 9 N -0.59 -14.43 3.05 -164.66 -0.50 -14.93 16 10 C 0.14 3.34 5.43 -3.47 -0.02 3.32 16 11 C 0.04 0.75 6.95 37.26 0.26 1.01 16 12 O -0.39 -7.41 10.49 -35.23 -0.37 -7.78 16 13 C 0.08 1.32 2.47 -26.85 -0.07 1.25 16 14 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 15 C -0.12 -1.54 5.82 -26.65 -0.16 -1.69 16 16 C 0.11 1.12 6.32 -3.67 -0.02 1.10 16 17 N -0.61 -8.73 2.98 -172.75 -0.52 -9.25 16 18 C 0.51 7.36 7.69 -10.98 -0.08 7.27 16 19 O -0.53 -10.28 15.44 5.55 0.09 -10.19 16 20 C -0.10 -0.87 4.19 -29.03 -0.12 -0.99 16 21 C -0.12 -1.33 4.39 -104.48 -0.46 -1.78 16 22 C -0.05 -0.46 9.85 -39.31 -0.39 -0.85 16 23 C -0.18 -1.86 10.04 -39.28 -0.39 -2.25 16 24 C 0.30 3.65 7.74 -17.12 -0.13 3.52 16 25 O -0.48 -4.98 13.56 -18.75 -0.25 -5.23 16 26 N -0.50 -6.79 10.39 -13.33 -0.14 -6.93 16 27 C 0.14 1.68 10.85 -17.57 -0.19 1.49 16 28 C 0.12 2.34 4.49 -3.75 -0.02 2.33 16 29 C 0.14 2.82 2.98 -67.80 -0.20 2.62 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 2.51 6.16 -51.93 -0.32 2.19 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.56 5.91 -51.93 -0.31 0.25 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.11 0.70 7.61 -51.93 -0.40 0.31 16 41 H 0.11 0.63 7.91 -51.93 -0.41 0.22 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.40 1.82 9.06 45.56 0.41 2.23 16 45 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 46 H 0.10 2.29 6.80 -51.93 -0.35 1.94 16 47 H 0.07 1.36 7.38 -51.93 -0.38 0.98 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -36.04 375.69 -8.53 -44.57 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.87 Total: 3.28 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -2.21 Total: 9.45 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.54 Total: -56.32 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.54 Total: -23.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.04 -8.53 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074299991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.776 kcal (2) G-P(sol) polarization free energy of solvation -36.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds