Wall clock time and date at job start Wed Apr 1 2020 04:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99962 * 2 1 4 4 H 1.48499 * 109.46904 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46937 * 299.99857 * 3 2 1 6 6 H 1.48502 * 109.47068 * 60.00172 * 3 2 1 7 7 C 1.38814 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00070 * 194.17773 * 7 2 1 9 9 N 1.36943 * 119.99687 * 13.89573 * 7 2 1 10 10 C 1.47352 * 121.29891 * 27.41538 * 9 7 2 11 11 C 1.53197 * 108.79047 * 129.72389 * 10 9 7 12 12 O 1.43145 * 109.73772 * 51.22186 * 11 10 9 13 13 C 1.42592 * 113.63990 * 298.30481 * 12 11 10 14 14 H 1.09001 * 109.34578 * 304.38422 * 13 12 11 15 15 C 1.52793 * 111.11697 * 183.59190 * 13 12 11 16 16 C 1.53370 * 108.81147 * 177.45364 * 15 13 12 17 17 N 1.46832 * 109.25273 * 53.82852 * 16 15 13 18 18 C 1.34776 * 120.40698 * 127.78773 * 17 16 15 19 19 O 1.21288 * 120.00317 * 180.02562 * 18 17 16 20 20 C 1.50702 * 120.00302 * 359.97438 * 18 17 16 21 21 C 1.50698 * 109.47854 * 180.02562 * 20 18 17 22 22 C 1.38827 * 120.35431 * 269.73136 * 21 20 18 23 23 C 1.38380 * 118.48410 * 179.73209 * 22 21 20 24 24 C 1.38920 * 119.10847 * 0.53513 * 23 22 21 25 25 O 1.35682 * 119.68262 * 179.75128 * 24 23 22 26 26 N 1.32249 * 120.63264 * 359.72145 * 24 23 22 27 27 C 1.31963 * 121.64641 * 0.02562 * 26 24 23 28 28 C 1.47130 * 119.18872 * 307.76581 * 17 16 15 29 29 C 1.46863 * 121.30126 * 207.12514 * 9 7 2 30 30 H 1.09007 * 109.64936 * 112.36734 * 29 9 7 31 31 H 0.96996 * 119.99897 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.58349 * 249.51328 * 10 9 7 33 33 H 1.08995 * 109.58497 * 9.79263 * 10 9 7 34 34 H 1.09000 * 109.42877 * 171.30638 * 11 10 9 35 35 H 1.09004 * 109.42830 * 291.19596 * 11 10 9 36 36 H 1.08996 * 109.58601 * 297.25568 * 15 13 12 37 37 H 1.09000 * 109.57858 * 57.52185 * 15 13 12 38 38 H 1.09005 * 109.50478 * 173.76490 * 16 15 13 39 39 H 1.08999 * 109.50920 * 293.89397 * 16 15 13 40 40 H 1.09001 * 109.46941 * 300.00511 * 20 18 17 41 41 H 1.08999 * 109.47126 * 59.99480 * 20 18 17 42 42 H 1.08000 * 120.75805 * 359.96146 * 22 21 20 43 43 H 1.07998 * 120.44515 * 180.27356 * 23 22 21 44 44 H 0.96699 * 113.99663 * 269.96835 * 25 24 23 45 45 H 1.08005 * 119.58224 * 179.97438 * 27 26 24 46 46 H 1.08996 * 109.72972 * 172.88807 * 28 17 16 47 47 H 1.08997 * 109.72376 * 293.55985 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0656 -1.2164 0.2285 9 7 1.3557 -2.3706 -0.2859 10 6 0.1565 -2.3868 -1.1421 11 6 0.3392 -3.4529 -2.2270 12 8 0.7166 -4.6956 -1.6250 13 6 1.9562 -4.6376 -0.9227 14 1 2.7360 -4.2806 -1.5955 15 6 2.3461 -6.0116 -0.3799 16 6 3.7126 -5.9020 0.3078 17 7 3.6651 -4.8314 1.3115 18 6 4.0526 -5.0682 2.5805 19 8 4.0099 -4.1786 3.4037 20 6 4.5379 -6.4388 2.9768 21 6 4.9067 -6.4382 4.4380 22 6 6.2004 -6.1283 4.8349 23 6 6.4951 -6.1339 6.1870 24 6 5.4953 -6.4585 7.0952 25 8 5.7728 -6.4725 8.4233 26 7 4.2755 -6.7533 6.6778 27 6 3.9631 -6.7515 5.3957 28 6 3.1897 -3.4967 0.9149 29 6 1.8250 -3.6573 0.2443 30 1 1.1026 -4.0426 0.9639 31 1 -0.4850 0.8400 -0.0004 32 1 -0.7196 -2.6256 -0.5392 33 1 0.0255 -1.4093 -1.6059 34 1 -0.5973 -3.5824 -2.7694 35 1 1.1185 -3.1352 -2.9199 36 1 1.5999 -6.3447 0.3414 37 1 2.4045 -6.7257 -1.2012 38 1 3.9517 -6.8474 0.7950 39 1 4.4763 -5.6712 -0.4348 40 1 3.7474 -7.1687 2.8023 41 1 5.4123 -6.7009 2.3812 42 1 6.9586 -5.8848 4.1054 43 1 7.4901 -5.8934 6.5312 44 1 6.0784 -7.3290 8.7522 45 1 2.9564 -6.9979 5.0918 46 1 3.0980 -2.8619 1.7962 47 1 3.8918 -3.0503 0.2107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074299991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:47 Heat of formation + Delta-G solvation = -75.353115 kcal Electronic energy + Delta-G solvation = -31157.887754 eV Core-core repulsion = 26919.940324 eV Total energy + Delta-G solvation = -4237.947431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76833 -41.18644 -40.01831 -38.13952 -37.36419 -36.54809 -34.34643 -33.49926 -33.00098 -32.58827 -31.39081 -29.28913 -28.28082 -26.46272 -25.44030 -24.72551 -23.97224 -23.28177 -22.64363 -21.40445 -20.02402 -19.80332 -18.71434 -18.38941 -17.96406 -17.22965 -17.12795 -17.02048 -16.72493 -16.46701 -16.20927 -15.88529 -15.55361 -15.46210 -15.18984 -14.95030 -14.69697 -14.55930 -14.17640 -14.03761 -13.96334 -13.68657 -13.36755 -13.25672 -12.97508 -12.89010 -12.71285 -12.68415 -12.60720 -12.33973 -12.30542 -12.02633 -11.90262 -11.71617 -11.25233 -11.01433 -10.77070 -10.74195 -10.53843 -10.42871 -9.74824 -9.66167 -8.75936 -7.93586 -5.42504 -0.02460 0.27618 1.41068 1.43403 1.53033 1.64513 1.94568 2.44211 2.60182 2.79185 2.85860 3.21942 3.44616 3.58795 3.68102 3.76464 3.90389 3.96720 4.01306 4.05934 4.11687 4.21949 4.28680 4.36626 4.41934 4.51522 4.54200 4.56458 4.59077 4.70714 4.75755 4.78961 4.86219 4.89350 4.99924 5.03365 5.14096 5.14602 5.24088 5.34713 5.45885 5.54598 5.59480 5.61062 6.24643 6.34481 6.46349 6.63944 6.94491 7.02840 7.20874 7.70773 8.25211 9.12583 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.002938 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.697476 B = 9527.925772 C =11058.404331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.298 1.298 7 C -0.258 4.258 8 H 0.075 0.925 9 N -0.607 5.607 10 C 0.145 3.855 11 C 0.053 3.947 12 O -0.392 6.392 13 C 0.079 3.921 14 H 0.056 0.944 15 C -0.118 4.118 16 C 0.108 3.892 17 N -0.610 5.610 18 C 0.507 3.493 19 O -0.591 6.591 20 C -0.083 4.083 21 C -0.130 4.130 22 C -0.049 4.049 23 C -0.186 4.186 24 C 0.287 3.713 25 O -0.496 6.496 26 N -0.538 5.538 27 C 0.120 3.880 28 C 0.140 3.860 29 C 0.133 3.867 30 H 0.001 0.999 31 H 0.250 0.750 32 H -0.007 1.007 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.140 0.860 39 H 0.094 0.906 40 H 0.142 0.858 41 H 0.151 0.849 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.418 0.582 45 H 0.166 0.834 46 H 0.055 0.945 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.863 -21.704 1.058 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.225 1.225 7 C -0.387 4.387 8 H 0.093 0.907 9 N -0.332 5.332 10 C 0.020 3.980 11 C -0.025 4.025 12 O -0.311 6.311 13 C 0.019 3.981 14 H 0.074 0.926 15 C -0.156 4.156 16 C -0.013 4.013 17 N -0.343 5.343 18 C 0.297 3.703 19 O -0.471 6.471 20 C -0.122 4.122 21 C -0.133 4.133 22 C -0.074 4.074 23 C -0.206 4.206 24 C 0.109 3.891 25 O -0.306 6.306 26 N -0.258 5.258 27 C -0.037 4.037 28 C 0.016 3.984 29 C 0.026 3.974 30 H 0.019 0.981 31 H 0.060 0.940 32 H 0.012 0.988 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.158 0.842 39 H 0.112 0.888 40 H 0.159 0.841 41 H 0.169 0.831 42 H 0.184 0.816 43 H 0.181 0.819 44 H 0.279 0.721 45 H 0.183 0.817 46 H 0.073 0.927 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.904 -20.899 2.137 25.192 hybrid contribution 0.218 1.885 0.014 1.898 sum 14.122 -19.013 2.151 23.782 Atomic orbital electron populations 1.70167 1.06650 1.25831 1.55628 1.25844 0.96133 1.01540 1.01065 0.85224 0.78712 0.79874 0.76791 1.18892 1.21015 1.22492 1.19489 0.92234 0.84837 1.42174 0.90724 1.44335 1.31381 1.02153 1.55369 1.21321 0.87341 0.98263 0.91110 1.23153 1.00593 0.84164 0.94571 1.87747 1.40010 1.32762 1.70571 1.22480 0.86087 0.97013 0.92485 0.92607 1.21920 0.97675 0.94389 1.01644 1.22164 0.96632 0.91256 0.91260 1.48360 1.63970 1.11629 1.10341 1.21433 0.76637 0.91407 0.80830 1.90752 1.56215 1.48848 1.51300 1.20727 1.06387 0.93009 0.92112 1.20539 0.94868 1.01251 0.96632 1.21777 0.96615 0.92948 0.96061 1.22322 1.01306 1.03637 0.93380 1.19509 0.88530 0.96057 0.85043 1.84753 1.87562 1.39265 1.19064 1.67115 1.21710 1.17235 1.19705 1.22652 1.00023 0.94743 0.86269 1.21186 0.94101 0.84319 0.98806 1.21372 0.93904 0.87768 0.94335 0.98119 0.94032 0.98846 0.91070 0.87429 0.93156 0.91357 0.86644 0.84192 0.88804 0.84066 0.83108 0.81590 0.81913 0.72089 0.81653 0.92683 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.30 11.06 21.65 0.24 -56.06 16 2 C -0.05 -2.86 5.02 84.86 0.43 -2.43 16 3 Si 0.97 45.70 29.58 68.60 2.03 47.73 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 7 C -0.26 -14.17 8.89 84.03 0.75 -13.42 16 8 H 0.08 3.99 6.26 -2.91 -0.02 3.97 16 9 N -0.61 -30.92 3.05 -674.86 -2.06 -32.98 16 10 C 0.15 7.15 5.43 86.28 0.47 7.62 16 11 C 0.05 2.00 6.95 72.05 0.50 2.50 16 12 O -0.39 -14.24 10.49 -148.98 -1.56 -15.80 16 13 C 0.08 2.56 2.47 30.52 0.08 2.63 16 14 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 15 C -0.12 -2.40 5.82 30.65 0.18 -2.22 16 16 C 0.11 1.60 6.32 86.44 0.55 2.14 16 17 N -0.61 -16.04 2.98 -818.84 -2.44 -18.48 16 18 C 0.51 13.54 7.69 87.66 0.67 14.22 16 19 O -0.59 -23.30 15.44 -3.05 -0.05 -23.34 16 20 C -0.08 -1.11 4.19 29.10 0.12 -0.99 16 21 C -0.13 -2.48 4.39 -19.77 -0.09 -2.57 16 22 C -0.05 -0.83 9.85 22.44 0.22 -0.61 16 23 C -0.19 -3.44 10.04 22.47 0.23 -3.21 16 24 C 0.29 6.75 7.74 84.79 0.66 7.41 16 25 O -0.50 -10.07 13.56 -90.00 -1.22 -11.29 16 26 N -0.54 -14.63 10.39 -308.94 -3.21 -17.84 16 27 C 0.12 2.78 10.85 84.63 0.92 3.70 16 28 C 0.14 5.33 4.49 86.23 0.39 5.72 16 29 C 0.13 5.62 2.98 44.88 0.13 5.75 16 30 H 0.00 0.05 8.14 -2.38 -0.02 0.04 16 31 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 32 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.07 3.85 6.16 -2.39 -0.01 3.84 16 34 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 35 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.12 1.66 8.14 -2.39 -0.02 1.65 16 38 H 0.14 0.70 5.91 -2.38 -0.01 0.68 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.14 1.02 7.61 -2.39 -0.02 1.00 16 41 H 0.15 0.73 7.91 -2.39 -0.02 0.71 16 42 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 43 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.42 3.59 9.06 -74.06 -0.67 2.92 16 45 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 46 H 0.05 2.61 6.80 -2.39 -0.02 2.60 16 47 H 0.07 2.67 7.38 -2.39 -0.02 2.65 16 Total: -1.00 -87.16 375.69 -1.74 -88.90 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.34 Total: 12.93 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 6.19 Total: 26.23 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -7.47 Total: -125.37 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -2.83 Total: -50.43 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -87.16 -1.74 -88.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074299991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.550 kcal (2) G-P(sol) polarization free energy of solvation -87.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds