Wall clock time and date at job start Wed Apr 1 2020 04:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48502 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47219 * 300.00527 * 3 2 1 6 6 H 1.48501 * 109.47196 * 60.00557 * 3 2 1 7 7 C 1.38817 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00483 * 197.36883 * 7 2 1 9 9 N 1.36940 * 119.99747 * 17.36773 * 7 2 1 10 10 C 1.46922 * 120.62915 * 207.66633 * 9 7 2 11 11 C 1.53195 * 108.77539 * 233.62504 * 10 9 7 12 12 C 1.53041 * 109.31345 * 305.36954 * 11 10 9 13 13 H 1.09007 * 109.44247 * 301.34637 * 12 11 10 14 14 N 1.46497 * 109.46089 * 181.38727 * 12 11 10 15 15 C 1.34773 * 120.00672 * 84.92303 * 14 12 11 16 16 O 1.21515 * 119.99944 * 0.02562 * 15 14 12 17 17 C 1.48160 * 120.00224 * 179.97438 * 15 14 12 18 18 C 1.39616 * 120.89064 * 0.02562 * 17 15 14 19 19 C 1.38849 * 118.94640 * 180.22765 * 18 17 15 20 20 O 1.35692 * 119.62331 * 179.74105 * 19 18 17 21 21 N 1.32204 * 120.75783 * 359.49902 * 19 18 17 22 22 C 1.31883 * 121.96947 * 0.49020 * 21 19 18 23 23 C 1.50694 * 119.51177 * 179.74999 * 22 21 19 24 24 C 1.52995 * 117.49910 * 163.76937 * 23 22 21 25 25 C 1.53001 * 117.49712 * 95.11081 * 23 22 21 26 26 C 1.38018 * 120.97380 * 359.77682 * 22 21 19 27 27 C 1.53037 * 109.54004 * 61.35658 * 12 11 10 28 28 H 1.08998 * 109.49820 * 58.62399 * 27 12 11 29 29 O 1.42906 * 109.49535 * 178.68620 * 27 12 11 30 30 C 1.46926 * 120.63230 * 27.68089 * 9 7 2 31 31 H 0.96999 * 119.99876 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.58794 * 353.41328 * 10 9 7 33 33 H 1.09007 * 109.59104 * 113.84017 * 10 9 7 34 34 H 1.08993 * 109.50027 * 185.41085 * 11 10 9 35 35 H 1.09003 * 109.49240 * 65.31468 * 11 10 9 36 36 H 0.96999 * 119.99467 * 264.92521 * 14 12 11 37 37 H 1.07996 * 120.52811 * 359.94589 * 18 17 15 38 38 H 0.96708 * 113.99513 * 89.99879 * 20 19 18 39 39 H 1.09003 * 115.55024 * 309.44140 * 23 22 21 40 40 H 1.09000 * 117.49979 * 0.02562 * 24 23 22 41 41 H 1.09005 * 117.50366 * 145.01898 * 24 23 22 42 42 H 1.09006 * 117.49922 * 214.97727 * 25 23 22 43 43 H 1.08993 * 117.50078 * 359.97438 * 25 23 22 44 44 H 1.08000 * 120.43611 * 179.97438 * 26 22 21 45 45 H 0.96697 * 113.99402 * 180.02562 * 29 27 12 46 46 H 1.09005 * 109.58459 * 6.58485 * 30 9 7 47 47 H 1.09001 * 109.70257 * 246.23043 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2786 9 7 1.3724 -2.3609 -0.3551 10 6 1.8196 -3.6548 0.1782 11 6 2.0753 -4.6089 -0.9928 12 6 0.8199 -4.6883 -1.8645 13 1 -0.0192 -5.0356 -1.2615 14 7 1.0495 -5.6253 -2.9668 15 6 0.8497 -6.9453 -2.7821 16 8 0.4785 -7.3582 -1.7012 17 6 1.0814 -7.8929 -3.8973 18 6 1.5074 -7.4388 -5.1469 19 6 1.7075 -8.3617 -6.1648 20 8 2.1164 -7.9350 -7.3863 21 7 1.5089 -9.6520 -5.9563 22 6 1.1071 -10.1170 -4.7894 23 6 0.8925 -11.5983 -4.6146 24 6 0.8021 -12.1352 -3.1848 25 6 2.0469 -12.4152 -4.0305 26 6 0.8797 -9.2669 -3.7261 27 6 0.5016 -3.3026 -2.4308 28 1 1.3500 -2.9443 -3.0138 29 8 -0.6529 -3.3837 -3.2691 30 6 0.2281 -2.3339 -1.2762 31 1 -0.4850 0.8400 0.0004 32 1 2.7401 -3.5178 0.7456 33 1 1.0472 -4.0699 0.8257 34 1 2.3148 -5.6004 -0.6086 35 1 2.9091 -4.2380 -1.5888 36 1 1.3455 -5.2957 -3.8298 37 1 1.6742 -6.3860 -5.3204 38 1 3.0773 -7.9039 -7.4906 39 1 0.2706 -12.0759 -5.3718 40 1 0.8974 -11.4169 -2.3705 41 1 0.1210 -12.9662 -3.0012 42 1 2.1841 -13.4304 -4.4031 43 1 2.9615 -11.8813 -3.7731 44 1 0.5505 -9.6571 -2.7744 45 1 -0.9126 -2.5399 -3.6634 46 1 0.0985 -1.3251 -1.6684 47 1 -0.6755 -2.6397 -0.7488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090318881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:19 Heat of formation + Delta-G solvation = -63.308754 kcal Electronic energy + Delta-G solvation = -30419.814135 eV Core-core repulsion = 26182.388987 eV Total energy + Delta-G solvation = -4237.425148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.09221 -40.91739 -39.43769 -38.83611 -37.16634 -36.91295 -35.97005 -34.36839 -33.56641 -31.36734 -31.00373 -30.50887 -27.34902 -26.08646 -25.35557 -24.08957 -23.53658 -23.07759 -22.67868 -21.45154 -21.00120 -19.71202 -18.92600 -18.37698 -18.29463 -18.10035 -17.24004 -16.89522 -16.75603 -16.63412 -16.19900 -15.96615 -15.68993 -15.62266 -15.49485 -15.07627 -14.98231 -14.45037 -14.16032 -13.87694 -13.59775 -13.42297 -13.35088 -13.09270 -13.03158 -12.88630 -12.69924 -12.54323 -12.29298 -12.12822 -12.00599 -11.89703 -11.69553 -11.58955 -11.38428 -11.27720 -11.03239 -10.97723 -10.62299 -10.59725 -10.18305 -9.89679 -8.77998 -7.91784 -5.38608 -0.52763 -0.20960 1.47056 1.50295 1.60268 1.62989 1.85607 2.34067 2.48117 2.49039 2.96677 3.08026 3.19791 3.25340 3.46724 3.60537 3.75800 3.80203 3.86852 3.94586 4.02177 4.02531 4.09168 4.24041 4.28843 4.39228 4.43315 4.51977 4.55884 4.65644 4.75750 4.83667 4.86241 4.91395 5.02482 5.03123 5.14227 5.15030 5.23536 5.28745 5.31089 5.34463 5.55597 5.63830 6.31986 6.35484 6.52217 6.76349 6.79901 6.99879 7.09163 7.76658 8.29253 9.15152 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020057 B = 0.002287 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.694035 B =12242.385214 C =12878.316155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.296 1.296 7 C -0.263 4.263 8 H 0.074 0.926 9 N -0.604 5.604 10 C 0.141 3.859 11 C -0.123 4.123 12 C 0.169 3.831 13 H 0.060 0.940 14 N -0.692 5.692 15 C 0.557 3.443 16 O -0.565 6.565 17 C -0.071 4.071 18 C -0.152 4.152 19 C 0.314 3.686 20 O -0.483 6.483 21 N -0.501 5.501 22 C 0.180 3.820 23 C -0.127 4.127 24 C -0.166 4.166 25 C -0.152 4.152 26 C -0.132 4.132 27 C 0.092 3.908 28 H 0.070 0.930 29 O -0.574 6.574 30 C 0.156 3.844 31 H 0.252 0.748 32 H 0.068 0.932 33 H 0.010 0.990 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.412 0.588 37 H 0.168 0.832 38 H 0.424 0.576 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.090 0.910 44 H 0.153 0.847 45 H 0.393 0.607 46 H 0.072 0.928 47 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 -20.085 -13.500 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.224 1.224 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.163 4.163 12 C 0.064 3.936 13 H 0.079 0.921 14 N -0.342 5.342 15 C 0.344 3.656 16 O -0.445 6.445 17 C -0.082 4.082 18 C -0.174 4.174 19 C 0.135 3.865 20 O -0.293 6.293 21 N -0.221 5.221 22 C 0.042 3.958 23 C -0.146 4.146 24 C -0.203 4.203 25 C -0.189 4.189 26 C -0.152 4.152 27 C 0.031 3.969 28 H 0.087 0.913 29 O -0.381 6.381 30 C 0.029 3.971 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.028 0.972 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.250 0.750 37 H 0.185 0.815 38 H 0.286 0.714 39 H 0.149 0.851 40 H 0.114 0.886 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.109 0.891 44 H 0.171 0.829 45 H 0.243 0.757 46 H 0.090 0.910 47 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 5.276 -21.296 -13.404 25.710 hybrid contribution 0.312 2.581 0.467 2.641 sum 5.587 -18.715 -12.937 23.427 Atomic orbital electron populations 1.70187 1.06721 1.26023 1.55143 1.25827 0.96011 1.01610 1.00969 0.85193 0.78726 0.79674 0.76737 1.18891 1.21398 1.22354 1.19576 0.93212 0.85527 1.40969 0.90865 1.44271 1.35638 1.02417 1.50580 1.21047 0.97981 0.85581 0.93864 1.22224 0.96777 0.99852 0.97492 1.20769 0.97962 0.87149 0.87708 0.92140 1.45777 1.67237 1.05427 1.15780 1.18383 0.77186 0.82702 0.87341 1.90769 1.47709 1.78474 1.27528 1.20176 1.00117 0.94244 0.93674 1.22449 1.01183 1.02760 0.91017 1.19023 0.95436 0.86719 0.85326 1.84779 1.30870 1.85587 1.28113 1.66777 1.13628 1.16975 1.24718 1.20301 0.93135 0.95724 0.86603 1.20885 1.05949 0.88008 0.99773 1.23250 1.01353 1.03632 0.92063 1.23080 0.92462 1.01254 1.02146 1.22186 0.99407 0.91919 1.01730 1.22568 0.88081 0.94276 0.92003 0.91254 1.86397 1.47834 1.38055 1.65848 1.21223 0.88386 0.98156 0.89325 0.93929 0.91316 0.97208 0.90826 0.90404 0.75005 0.81507 0.71430 0.85062 0.88552 0.85937 0.86127 0.89148 0.82940 0.75748 0.91000 0.98644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.20 11.19 21.65 0.24 -52.96 16 2 C -0.05 -2.59 4.91 84.86 0.42 -2.17 16 3 Si 0.97 42.69 29.59 68.60 2.03 44.72 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.26 -13.70 9.58 84.03 0.81 -12.90 16 8 H 0.07 3.69 7.89 -2.92 -0.02 3.67 16 9 N -0.60 -28.99 2.99 -699.10 -2.09 -31.08 16 10 C 0.14 5.76 6.52 86.36 0.56 6.32 16 11 C -0.12 -4.11 5.65 30.67 0.17 -3.94 16 12 C 0.17 5.74 2.12 45.02 0.10 5.84 16 13 H 0.06 2.47 7.58 -2.38 -0.02 2.45 16 14 N -0.69 -18.90 4.88 -444.99 -2.17 -21.07 16 15 C 0.56 16.35 7.76 86.88 0.67 17.03 16 16 O -0.57 -20.73 16.11 -3.76 -0.06 -20.79 16 17 C -0.07 -1.69 5.91 -19.90 -0.12 -1.81 16 18 C -0.15 -2.91 9.55 22.75 0.22 -2.69 16 19 C 0.31 6.22 7.74 84.78 0.66 6.87 16 20 O -0.48 -7.53 13.56 -90.11 -1.22 -8.75 16 21 N -0.50 -11.10 10.27 -297.16 -3.05 -14.16 16 22 C 0.18 3.72 6.45 42.50 0.27 4.00 16 23 C -0.13 -1.97 6.21 -11.54 -0.07 -2.04 16 24 C -0.17 -2.04 9.79 30.62 0.30 -1.74 16 25 C -0.15 -1.83 10.24 30.62 0.31 -1.51 16 26 C -0.13 -2.97 8.92 22.63 0.20 -2.77 16 27 C 0.09 3.21 3.14 30.67 0.10 3.31 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 O -0.57 -18.30 13.16 -148.98 -1.96 -20.26 16 30 C 0.16 7.15 4.94 86.36 0.43 7.58 16 31 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 33 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.41 8.82 6.74 -92.71 -0.62 8.19 16 37 H 0.17 2.36 6.53 -2.91 -0.02 2.34 16 38 H 0.42 2.12 9.06 -74.05 -0.67 1.45 16 39 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.10 1.34 6.38 -2.39 -0.02 1.33 16 41 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 44 H 0.15 3.40 5.92 -2.91 -0.02 3.38 16 45 H 0.39 9.84 9.08 -74.06 -0.67 9.17 16 46 H 0.07 3.62 6.03 -2.38 -0.01 3.60 16 47 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 Total: -1.00 -72.14 387.23 -4.18 -76.32 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.92 Total: 28.68 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 5.02 Total: 19.36 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -7.07 Total: -119.27 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -3.24 Total: -49.81 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -72.14 -4.18 -76.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090318881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.011 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds