Wall clock time and date at job start Wed Apr 1 2020 05:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48494 * 109.46939 * 269.98986 * 3 2 1 5 5 H 1.48499 * 109.47397 * 29.99697 * 3 2 1 6 6 H 1.48502 * 109.46868 * 149.99336 * 3 2 1 7 7 C 1.38811 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99910 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.47153 * 126.52004 * 0.05050 * 9 7 2 11 11 C 1.53840 * 106.28121 * 210.82000 * 10 9 7 12 12 C 1.53676 * 105.55459 * 340.69642 * 11 10 9 13 13 C 1.53004 * 111.17392 * 122.04478 * 12 11 10 14 14 N 1.46501 * 109.46923 * 62.59631 * 13 12 11 15 15 C 1.34784 * 119.99794 * 179.97438 * 14 13 12 16 16 O 1.21680 * 119.99805 * 0.02562 * 15 14 13 17 17 C 1.46773 * 119.99753 * 180.02562 * 15 14 13 18 18 C 1.36063 * 125.65010 * 180.02562 * 17 15 14 19 19 C 1.41727 * 106.62396 * 180.26207 * 18 17 15 20 20 C 1.47485 * 126.77453 * 179.71927 * 19 18 17 21 21 N 1.34782 * 120.00138 * 179.97438 * 20 19 18 22 22 O 1.21599 * 120.00008 * 0.02562 * 20 19 18 23 23 C 1.37814 * 106.45091 * 359.61478 * 19 18 17 24 24 O 1.33491 * 108.34293 * 0.39045 * 23 19 18 25 25 C 1.53515 * 110.45422 * 245.93021 * 12 11 10 26 26 C 1.54191 * 106.58887 * 116.98191 * 25 12 11 27 27 C 1.54736 * 104.34300 * 335.43439 * 26 25 12 28 28 C 1.47252 * 126.51906 * 179.97438 * 9 7 2 29 29 H 1.08996 * 112.28584 * 26.95711 * 28 9 7 30 30 H 0.96998 * 119.99553 * 0.02562 * 1 2 3 31 31 H 1.09008 * 110.08962 * 330.02033 * 10 9 7 32 32 H 1.08999 * 110.09906 * 91.55224 * 10 9 7 33 33 H 1.09003 * 110.23229 * 221.67799 * 11 10 9 34 34 H 1.08997 * 110.23081 * 99.72057 * 11 10 9 35 35 H 1.08994 * 109.47011 * 302.60132 * 13 12 11 36 36 H 1.08998 * 109.47145 * 182.60090 * 13 12 11 37 37 H 0.96995 * 120.00585 * 0.02562 * 14 13 12 38 38 H 1.08002 * 126.68605 * 359.97438 * 18 17 15 39 39 H 0.96999 * 119.99758 * 0.02562 * 21 20 19 40 40 H 0.96996 * 120.00237 * 180.02562 * 21 20 19 41 41 H 1.07997 * 125.82787 * 180.11809 * 23 19 18 42 42 H 1.09006 * 110.04716 * 237.09327 * 25 12 11 43 43 H 1.09000 * 110.04269 * 358.54290 * 25 12 11 44 44 H 1.09001 * 110.80019 * 216.50135 * 26 25 12 45 45 H 1.08995 * 110.10736 * 94.02413 * 26 25 12 46 46 H 1.08998 * 110.65526 * 278.61781 * 27 26 25 47 47 H 1.09004 * 110.64812 * 155.53917 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1364 -2.5552 -0.0010 11 6 -0.4218 -3.8636 0.7561 12 6 0.9012 -4.6453 0.7412 13 6 1.3744 -4.9579 2.1622 14 7 0.3909 -5.8167 2.8266 15 6 0.5986 -6.2232 4.0948 16 8 1.6029 -5.8765 4.6879 17 6 -0.3865 -7.0839 4.7602 18 6 -0.2938 -7.5593 6.0317 19 6 -1.4513 -8.3458 6.2559 20 6 -1.7976 -9.0755 7.4900 21 7 -2.9413 -9.7856 7.5546 22 8 -1.0516 -9.0358 8.4494 23 6 -2.1906 -8.2923 5.0941 24 8 -1.5336 -7.5352 4.2125 25 6 0.7571 -5.9282 -0.0895 26 6 1.7307 -5.7950 -1.2777 27 6 1.9137 -4.2687 -1.4541 28 6 1.9123 -3.7387 0.0005 29 1 2.9015 -3.7596 0.4577 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6097 -1.7163 0.5094 32 1 -0.5043 -2.6259 -1.0246 33 1 -1.2008 -4.4314 0.2472 34 1 -0.7207 -3.6480 1.7819 35 1 1.4824 -4.0289 2.7218 36 1 2.3353 -5.4708 2.1206 37 1 -0.4095 -6.0933 2.3537 38 1 0.5081 -7.3771 6.7318 39 1 -3.5366 -9.8170 6.7894 40 1 -3.1693 -10.2652 8.3663 41 1 -3.1376 -8.7830 4.9242 42 1 1.0075 -6.7974 0.5187 43 1 -0.2619 -6.0167 -0.4664 44 1 1.3040 -6.2350 -2.1790 45 1 2.6826 -6.2682 -1.0369 46 1 1.0833 -3.8445 -2.0185 47 1 2.8634 -4.0492 -1.9422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094508740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:34 Heat of formation + Delta-G solvation = -37.616317 kcal Electronic energy + Delta-G solvation = -30536.019345 eV Core-core repulsion = 26299.708304 eV Total energy + Delta-G solvation = -4236.311040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.19114 -40.04730 -39.52206 -38.87244 -34.94472 -34.31201 -33.97273 -33.29544 -31.67723 -30.82709 -30.00704 -28.03165 -26.83556 -24.84676 -24.42180 -23.76120 -22.81892 -21.29016 -20.50810 -20.35773 -19.63655 -19.24208 -18.17393 -17.46194 -17.01221 -16.87037 -16.73628 -16.33153 -15.69260 -15.17975 -15.05876 -14.81978 -14.65562 -14.31036 -14.03242 -13.68220 -13.60743 -13.47457 -13.38510 -13.06596 -12.83265 -12.56841 -11.89445 -11.66344 -11.24314 -11.00515 -10.82295 -10.67147 -10.63535 -10.56581 -10.44870 -10.42257 -10.27857 -10.19864 -10.10849 -10.04506 -9.78059 -9.62994 -9.51330 -9.25939 -8.91762 -8.67437 -6.88885 -5.64569 -3.09781 0.59993 1.23207 2.19681 2.85056 2.90171 3.09447 3.21975 3.39682 3.45283 3.46780 4.05525 4.21965 4.47069 4.56261 4.92273 4.93881 5.05734 5.07222 5.16640 5.30974 5.47694 5.52608 5.58747 5.72064 5.79140 5.87890 5.91949 6.02962 6.07374 6.08833 6.13165 6.23545 6.28558 6.29578 6.34324 6.42036 6.45162 6.61245 6.66992 6.76427 6.81977 6.86430 7.05937 7.43117 7.49180 7.62179 7.79235 7.84940 8.02813 8.40617 9.20665 9.81586 10.47955 11.35695 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.002354 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.892678 B =11893.722210 C =12668.566779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.588 5.588 10 C 0.136 3.864 11 C -0.130 4.130 12 C -0.087 4.087 13 C 0.140 3.860 14 N -0.707 5.707 15 C 0.597 3.403 16 O -0.516 6.516 17 C -0.068 4.068 18 C -0.073 4.073 19 C -0.244 4.244 20 C 0.594 3.406 21 N -0.852 5.852 22 O -0.533 6.533 23 C 0.042 3.958 24 O -0.148 6.148 25 C -0.111 4.111 26 C -0.122 4.122 27 C -0.135 4.135 28 C 0.169 3.831 29 H 0.066 0.934 30 H 0.252 0.748 31 H 0.121 0.879 32 H 0.006 0.994 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.405 0.595 38 H 0.171 0.829 39 H 0.399 0.601 40 H 0.408 0.592 41 H 0.219 0.781 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.887 -21.111 6.105 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.309 5.309 10 C 0.011 3.989 11 C -0.169 4.169 12 C -0.089 4.089 13 C 0.017 3.983 14 N -0.357 5.357 15 C 0.381 3.619 16 O -0.393 6.393 17 C -0.120 4.120 18 C -0.094 4.094 19 C -0.249 4.249 20 C 0.379 3.621 21 N -0.416 5.416 22 O -0.410 6.410 23 C -0.031 4.031 24 O -0.041 6.041 25 C -0.149 4.149 26 C -0.160 4.160 27 C -0.176 4.176 28 C 0.059 3.941 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.138 0.862 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.239 0.761 38 H 0.189 0.811 39 H 0.228 0.772 40 H 0.239 0.761 41 H 0.235 0.765 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.640 -20.301 6.731 22.712 hybrid contribution -0.558 0.298 -0.265 0.686 sum -8.199 -20.004 6.465 22.565 Atomic orbital electron populations 1.69627 1.04902 1.24639 1.57812 1.24768 0.95686 0.97724 1.02509 0.86069 0.78593 0.83331 0.77511 1.21697 1.21700 1.20656 1.19104 0.90506 0.82330 1.42714 0.90385 1.44569 1.01777 0.99353 1.85154 1.21863 0.85246 0.95171 0.96613 1.22713 0.94305 0.98970 1.00928 1.22036 0.98485 0.95655 0.92732 1.21520 0.90435 0.93983 0.92348 1.45988 1.25690 1.50919 1.13117 1.16527 0.84073 0.79449 0.81837 1.90920 1.26964 1.56485 1.64950 1.22196 0.88781 1.06177 0.94817 1.21860 0.97986 0.94645 0.94903 1.20619 0.99384 1.08571 0.96282 1.17233 0.80908 0.77843 0.86069 1.43652 1.23566 1.54003 1.20350 1.90868 1.50130 1.62526 1.37460 1.25015 0.97484 0.93592 0.87051 1.83955 1.28907 1.50962 1.40281 1.22218 0.99831 0.96359 0.96524 1.22264 0.98682 0.97808 0.97291 1.23025 1.01382 0.93280 0.99874 1.21664 0.94562 0.85596 0.92242 0.91641 0.93726 0.86169 0.97609 0.92763 0.92595 0.90327 0.91374 0.76058 0.81110 0.77250 0.76095 0.76480 0.92355 0.91932 0.92544 0.92426 0.91221 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 10.06 55.49 0.56 -25.67 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.22 -5.87 10.33 -15.06 -0.16 -6.03 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.59 -14.16 2.98 -161.99 -0.48 -14.65 16 10 C 0.14 3.14 5.68 -3.25 -0.02 3.13 16 11 C -0.13 -2.29 5.81 -25.94 -0.15 -2.44 16 12 C -0.09 -1.39 0.65 -153.00 -0.10 -1.48 16 13 C 0.14 2.17 4.27 -4.04 -0.02 2.15 16 14 N -0.71 -9.36 4.84 -61.59 -0.30 -9.66 16 15 C 0.60 8.60 7.79 -12.81 -0.10 8.50 16 16 O -0.52 -9.25 16.85 5.21 0.09 -9.17 16 17 C -0.07 -0.81 7.09 -36.92 -0.26 -1.07 16 18 C -0.07 -0.86 10.41 -39.03 -0.41 -1.27 16 19 C -0.24 -2.21 6.16 -104.95 -0.65 -2.86 16 20 C 0.59 5.53 8.09 -12.49 -0.10 5.43 16 21 N -0.85 -3.51 8.86 30.45 0.27 -3.24 16 22 O -0.53 -7.48 17.77 5.28 0.09 -7.38 16 23 C 0.04 0.25 11.64 30.58 0.36 0.61 16 24 O -0.15 -1.32 10.32 6.21 0.06 -1.25 16 25 C -0.11 -1.46 5.62 -25.84 -0.15 -1.61 16 26 C -0.12 -1.66 6.83 -25.19 -0.17 -1.84 16 27 C -0.14 -2.35 6.37 -24.86 -0.16 -2.51 16 28 C 0.17 3.26 3.59 -65.67 -0.24 3.02 16 29 H 0.07 1.27 7.95 -51.93 -0.41 0.86 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.12 3.20 5.45 -51.92 -0.28 2.92 16 32 H 0.01 0.14 7.71 -51.93 -0.40 -0.26 16 33 H 0.05 0.83 7.11 -51.93 -0.37 0.47 16 34 H 0.06 0.99 7.62 -51.93 -0.40 0.60 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.40 4.54 7.60 -40.82 -0.31 4.23 16 38 H 0.17 2.15 8.06 -52.49 -0.42 1.72 16 39 H 0.40 0.22 7.78 -40.82 -0.32 -0.10 16 40 H 0.41 1.27 8.93 -40.82 -0.36 0.91 16 41 H 0.22 0.06 7.46 -52.49 -0.39 -0.33 16 42 H 0.06 0.68 7.47 -51.93 -0.39 0.30 16 43 H 0.06 0.78 7.10 -51.93 -0.37 0.41 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.35 7.28 -51.93 -0.38 0.97 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -34.86 382.76 -7.83 -42.69 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.46 Total: 4.36 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.41 Total: 1.32 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.05 Total: -53.22 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.25 Total: -17.80 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.86 -7.83 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094508740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.078 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds