Wall clock time and date at job start Wed Apr 1 2020 05:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48494 * 109.46939 * 269.98986 * 3 2 1 5 5 H 1.48499 * 109.47397 * 29.99697 * 3 2 1 6 6 H 1.48502 * 109.46868 * 149.99336 * 3 2 1 7 7 C 1.38811 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99910 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.47153 * 126.52004 * 0.05050 * 9 7 2 11 11 C 1.53840 * 106.28121 * 210.82000 * 10 9 7 12 12 C 1.53676 * 105.55459 * 340.69642 * 11 10 9 13 13 C 1.53004 * 111.17392 * 122.04478 * 12 11 10 14 14 N 1.46501 * 109.46923 * 62.59631 * 13 12 11 15 15 C 1.34784 * 119.99794 * 179.97438 * 14 13 12 16 16 O 1.21680 * 119.99805 * 0.02562 * 15 14 13 17 17 C 1.46773 * 119.99753 * 180.02562 * 15 14 13 18 18 C 1.36063 * 125.65010 * 180.02562 * 17 15 14 19 19 C 1.41727 * 106.62396 * 180.26207 * 18 17 15 20 20 C 1.47485 * 126.77453 * 179.71927 * 19 18 17 21 21 N 1.34782 * 120.00138 * 179.97438 * 20 19 18 22 22 O 1.21599 * 120.00008 * 0.02562 * 20 19 18 23 23 C 1.37814 * 106.45091 * 359.61478 * 19 18 17 24 24 O 1.33491 * 108.34293 * 0.39045 * 23 19 18 25 25 C 1.53515 * 110.45422 * 245.93021 * 12 11 10 26 26 C 1.54191 * 106.58887 * 116.98191 * 25 12 11 27 27 C 1.54736 * 104.34300 * 335.43439 * 26 25 12 28 28 C 1.47252 * 126.51906 * 179.97438 * 9 7 2 29 29 H 1.08996 * 112.28584 * 26.95711 * 28 9 7 30 30 H 0.96998 * 119.99553 * 0.02562 * 1 2 3 31 31 H 1.09008 * 110.08962 * 330.02033 * 10 9 7 32 32 H 1.08999 * 110.09906 * 91.55224 * 10 9 7 33 33 H 1.09003 * 110.23229 * 221.67799 * 11 10 9 34 34 H 1.08997 * 110.23081 * 99.72057 * 11 10 9 35 35 H 1.08994 * 109.47011 * 302.60132 * 13 12 11 36 36 H 1.08998 * 109.47145 * 182.60090 * 13 12 11 37 37 H 0.96995 * 120.00585 * 0.02562 * 14 13 12 38 38 H 1.08002 * 126.68605 * 359.97438 * 18 17 15 39 39 H 0.96999 * 119.99758 * 0.02562 * 21 20 19 40 40 H 0.96996 * 120.00237 * 180.02562 * 21 20 19 41 41 H 1.07997 * 125.82787 * 180.11809 * 23 19 18 42 42 H 1.09006 * 110.04716 * 237.09327 * 25 12 11 43 43 H 1.09000 * 110.04269 * 358.54290 * 25 12 11 44 44 H 1.09001 * 110.80019 * 216.50135 * 26 25 12 45 45 H 1.08995 * 110.10736 * 94.02413 * 26 25 12 46 46 H 1.08998 * 110.65526 * 278.61781 * 27 26 25 47 47 H 1.09004 * 110.64812 * 155.53917 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1364 -2.5552 -0.0010 11 6 -0.4218 -3.8636 0.7561 12 6 0.9012 -4.6453 0.7412 13 6 1.3744 -4.9579 2.1622 14 7 0.3909 -5.8167 2.8266 15 6 0.5986 -6.2232 4.0948 16 8 1.6029 -5.8765 4.6879 17 6 -0.3865 -7.0839 4.7602 18 6 -0.2938 -7.5593 6.0317 19 6 -1.4513 -8.3458 6.2559 20 6 -1.7976 -9.0755 7.4900 21 7 -2.9413 -9.7856 7.5546 22 8 -1.0516 -9.0358 8.4494 23 6 -2.1906 -8.2923 5.0941 24 8 -1.5336 -7.5352 4.2125 25 6 0.7571 -5.9282 -0.0895 26 6 1.7307 -5.7950 -1.2777 27 6 1.9137 -4.2687 -1.4541 28 6 1.9123 -3.7387 0.0005 29 1 2.9015 -3.7596 0.4577 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6097 -1.7163 0.5094 32 1 -0.5043 -2.6259 -1.0246 33 1 -1.2008 -4.4314 0.2472 34 1 -0.7207 -3.6480 1.7819 35 1 1.4824 -4.0289 2.7218 36 1 2.3353 -5.4708 2.1206 37 1 -0.4095 -6.0933 2.3537 38 1 0.5081 -7.3771 6.7318 39 1 -3.5366 -9.8170 6.7894 40 1 -3.1693 -10.2652 8.3663 41 1 -3.1376 -8.7830 4.9242 42 1 1.0075 -6.7974 0.5187 43 1 -0.2619 -6.0167 -0.4664 44 1 1.3040 -6.2350 -2.1790 45 1 2.6826 -6.2682 -1.0369 46 1 1.0833 -3.8445 -2.0185 47 1 2.8634 -4.0492 -1.9422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094508740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:33 Heat of formation + Delta-G solvation = -64.939261 kcal Electronic energy + Delta-G solvation = -30537.204156 eV Core-core repulsion = 26299.708304 eV Total energy + Delta-G solvation = -4237.495852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.92429 -41.36286 -40.29458 -40.10386 -36.40559 -35.47252 -34.95076 -34.02404 -33.34888 -32.19736 -31.14088 -29.41050 -28.44293 -26.07442 -25.54895 -25.06267 -23.88150 -22.16519 -22.05865 -21.45186 -20.83486 -20.14838 -19.45587 -18.89430 -18.03088 -17.64795 -17.46577 -17.11235 -16.97052 -16.77432 -16.28466 -16.03561 -15.64864 -15.54670 -15.24036 -15.15645 -14.92636 -14.64051 -14.31623 -14.23276 -14.06803 -13.74473 -13.59007 -13.36088 -12.83068 -12.82951 -12.53799 -12.14124 -11.99975 -11.83676 -11.71754 -11.58251 -11.56914 -11.41495 -11.36631 -11.24646 -11.22551 -11.04624 -10.73163 -10.69128 -10.31126 -9.82234 -8.84976 -7.71867 -5.18138 -0.11917 0.43505 1.42424 1.45838 1.46856 1.55224 1.92757 2.04042 2.27753 2.49900 2.53787 3.31801 3.43612 3.50635 3.60263 3.70085 3.75834 3.90205 4.00828 4.27880 4.32574 4.39382 4.45709 4.49693 4.56867 4.64035 4.66438 4.71459 4.78417 4.91129 4.94295 4.97425 5.06724 5.12788 5.19523 5.24435 5.31164 5.44618 5.50564 5.52054 5.54497 5.61491 5.71204 5.85759 5.91067 6.38096 6.42175 6.43145 6.96215 7.15145 7.29033 7.83401 8.49328 9.25821 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.002354 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.892678 B =11893.722210 C =12668.566779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.139 3.861 11 C -0.116 4.116 12 C -0.073 4.073 13 C 0.150 3.850 14 N -0.694 5.694 15 C 0.597 3.403 16 O -0.563 6.563 17 C -0.088 4.088 18 C -0.084 4.084 19 C -0.272 4.272 20 C 0.592 3.408 21 N -0.822 5.822 22 O -0.595 6.595 23 C 0.099 3.901 24 O -0.143 6.143 25 C -0.103 4.103 26 C -0.111 4.111 27 C -0.131 4.131 28 C 0.154 3.846 29 H 0.058 0.942 30 H 0.245 0.755 31 H 0.083 0.917 32 H -0.015 1.015 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.418 0.582 38 H 0.148 0.852 39 H 0.421 0.579 40 H 0.416 0.584 41 H 0.285 0.715 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.057 -24.604 5.298 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.198 1.198 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.013 3.987 11 C -0.155 4.155 12 C -0.074 4.074 13 C 0.027 3.973 14 N -0.344 5.344 15 C 0.384 3.616 16 O -0.444 6.444 17 C -0.139 4.139 18 C -0.105 4.105 19 C -0.277 4.277 20 C 0.379 3.621 21 N -0.387 5.387 22 O -0.476 6.476 23 C 0.026 3.974 24 O -0.036 6.036 25 C -0.141 4.141 26 C -0.149 4.149 27 C -0.171 4.171 28 C 0.046 3.954 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.003 0.997 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.256 0.744 38 H 0.166 0.834 39 H 0.253 0.747 40 H 0.248 0.752 41 H 0.301 0.699 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.869 -23.863 5.873 26.483 hybrid contribution 0.038 1.317 -0.003 1.317 sum -9.832 -22.547 5.870 25.288 Atomic orbital electron populations 1.69899 1.05984 1.24592 1.59207 1.25520 0.96556 1.00633 1.03361 0.85135 0.77614 0.79651 0.77320 1.21467 1.22183 1.19815 1.19423 0.90846 0.83854 1.41480 0.90452 1.44796 1.02520 1.00461 1.85350 1.21632 0.84660 0.96752 0.95614 1.22560 0.96130 0.96716 1.00092 1.21872 0.96133 0.96413 0.93016 1.21218 0.91431 0.92923 0.91734 1.45744 1.25638 1.50155 1.12875 1.16788 0.83994 0.79138 0.81689 1.90890 1.29164 1.58372 1.65973 1.21405 0.90068 1.07759 0.94643 1.21878 0.98684 0.95226 0.94734 1.20620 0.99444 1.09761 0.97827 1.17342 0.81526 0.77945 0.85335 1.43402 1.21890 1.51858 1.21530 1.90845 1.52412 1.64953 1.39415 1.26218 0.97359 0.89425 0.84439 1.83972 1.27841 1.51241 1.40496 1.22201 1.00917 0.94995 0.95945 1.22225 0.99871 0.94367 0.98473 1.22862 1.00202 0.96426 0.97617 1.21980 0.95020 0.84156 0.94215 0.92401 0.94501 0.89971 0.99684 0.89462 0.93008 0.94075 0.90900 0.74419 0.83448 0.74688 0.75163 0.69941 0.89884 0.90080 0.90367 0.90936 0.93598 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.27 10.06 21.65 0.22 -56.05 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 3 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.23 -12.65 10.33 84.03 0.87 -11.78 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.61 -30.39 2.98 -666.40 -1.99 -32.38 16 10 C 0.14 6.61 5.68 86.54 0.49 7.10 16 11 C -0.12 -3.98 5.81 31.11 0.18 -3.80 16 12 C -0.07 -2.21 0.65 -51.20 -0.03 -2.24 16 13 C 0.15 4.61 4.27 86.38 0.37 4.98 16 14 N -0.69 -17.37 4.84 -466.98 -2.26 -19.63 16 15 C 0.60 17.14 7.79 86.47 0.67 17.82 16 16 O -0.56 -21.08 16.85 -4.28 -0.07 -21.16 16 17 C -0.09 -1.97 7.09 24.00 0.17 -1.80 16 18 C -0.08 -1.98 10.41 22.63 0.24 -1.74 16 19 C -0.27 -4.29 6.16 -20.08 -0.12 -4.41 16 20 C 0.59 10.01 8.09 86.68 0.70 10.71 16 21 N -0.82 -3.86 8.86 -175.84 -1.56 -5.42 16 22 O -0.59 -16.94 17.77 -4.03 -0.07 -17.02 16 23 C 0.10 0.65 11.64 67.72 0.79 1.44 16 24 O -0.14 -1.97 10.32 -0.68 -0.01 -1.98 16 25 C -0.10 -2.28 5.62 31.17 0.18 -2.11 16 26 C -0.11 -2.64 6.83 31.59 0.22 -2.42 16 27 C -0.13 -4.44 6.37 31.81 0.20 -4.24 16 28 C 0.15 5.97 3.59 46.04 0.17 6.14 16 29 H 0.06 2.30 7.95 -2.39 -0.02 2.28 16 30 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.08 4.60 5.45 -2.38 -0.01 4.58 16 32 H -0.01 -0.75 7.71 -2.39 -0.02 -0.76 16 33 H 0.09 2.42 7.11 -2.39 -0.02 2.41 16 34 H 0.05 1.82 7.62 -2.39 -0.02 1.80 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.42 8.07 7.60 -92.71 -0.70 7.37 16 38 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 39 H 0.42 -1.83 7.78 -92.71 -0.72 -2.55 16 40 H 0.42 1.34 8.93 -92.71 -0.83 0.52 16 41 H 0.29 -2.23 7.46 -2.91 -0.02 -2.26 16 42 H 0.08 1.52 7.47 -2.38 -0.02 1.50 16 43 H 0.08 1.58 7.10 -2.39 -0.02 1.56 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.05 1.77 7.28 -2.39 -0.02 1.75 16 47 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -85.24 382.76 0.63 -84.61 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -1.21 Total: 10.36 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 5.55 Total: 10.22 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -5.59 Total: -113.48 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.15 Total: -40.15 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -85.24 0.63 -84.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094508740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.673 kcal (2) G-P(sol) polarization free energy of solvation -85.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds