Wall clock time and date at job start Wed Apr 1 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99757 * 2 1 4 4 H 1.48506 * 109.46747 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47129 * 299.99444 * 3 2 1 6 6 H 1.48497 * 109.47306 * 59.99822 * 3 2 1 7 7 C 1.38809 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.47572 * 134.49017 * 180.02562 * 9 7 2 11 11 C 1.53946 * 86.11734 * 155.35891 * 10 9 7 12 12 N 1.46497 * 113.74321 * 137.95042 * 11 10 9 13 13 C 1.46762 * 124.34850 * 122.12097 * 12 11 10 14 14 C 1.54479 * 105.53509 * 163.21275 * 13 12 11 15 15 H 1.09002 * 110.97085 * 143.33080 * 14 13 12 16 16 N 1.46501 * 111.00223 * 267.07465 * 14 13 12 17 17 C 1.34780 * 119.99988 * 198.84560 * 16 14 13 18 18 O 1.21280 * 119.99755 * 0.02562 * 17 16 14 19 19 C 1.50699 * 119.99789 * 180.02562 * 17 16 14 20 20 C 1.52999 * 109.46846 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.47202 * 180.02562 * 20 19 17 22 22 C 1.34513 * 125.79033 * 89.70950 * 21 20 19 23 23 C 1.41383 * 106.84055 * 179.89395 * 22 21 20 24 24 C 1.34519 * 106.84016 * 0.37253 * 23 22 21 25 25 O 1.34301 * 108.41887 * 359.77450 * 24 23 22 26 26 C 1.54623 * 101.76448 * 25.20998 * 14 13 12 27 27 C 1.34417 * 124.35094 * 301.94861 * 12 11 10 28 28 O 1.21283 * 124.94355 * 0.43141 * 27 12 11 29 29 C 1.47809 * 134.45428 * 359.86813 * 9 7 2 30 30 H 0.96999 * 119.99865 * 0.02562 * 1 2 3 31 31 H 1.08996 * 113.77356 * 41.05688 * 10 9 7 32 32 H 1.09000 * 113.77234 * 269.65830 * 10 9 7 33 33 H 1.09000 * 113.74381 * 269.15345 * 11 10 9 34 34 H 1.09004 * 110.38933 * 44.10688 * 13 12 11 35 35 H 1.08995 * 110.11843 * 282.18104 * 13 12 11 36 36 H 0.97004 * 119.99926 * 18.85712 * 16 14 13 37 37 H 1.09007 * 109.47307 * 300.00490 * 19 17 16 38 38 H 1.09002 * 109.47338 * 60.00566 * 19 17 16 39 39 H 1.09003 * 109.47165 * 299.99481 * 20 19 17 40 40 H 1.08997 * 109.47472 * 60.00260 * 20 19 17 41 41 H 1.07998 * 126.58255 * 0.03113 * 22 21 20 42 42 H 1.08009 * 126.57992 * 180.12565 * 23 22 21 43 43 H 1.07999 * 125.78532 * 179.75411 * 24 23 22 44 44 H 1.09000 * 110.48720 * 216.52574 * 26 14 13 45 45 H 1.08997 * 110.48721 * 93.88170 * 26 14 13 46 46 H 1.08997 * 113.76968 * 90.37992 * 29 9 7 47 47 H 1.09000 * 113.83983 * 318.91027 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8100 0.0015 11 6 0.3466 -4.0826 0.6409 12 7 -0.3333 -5.2613 0.0980 13 6 -0.7658 -6.4109 0.9012 14 6 -1.7821 -7.1716 0.0210 15 1 -1.6876 -8.2489 0.1581 16 7 -3.1510 -6.7289 0.2973 17 6 -4.1949 -7.5012 -0.0637 18 8 -4.0010 -8.5630 -0.6169 19 6 -5.6030 -7.0455 0.2201 20 6 -6.5914 -8.0979 -0.2862 21 6 -7.9996 -7.6419 -0.0030 22 6 -8.7664 -6.9009 -0.8230 23 6 -10.0035 -6.7100 -0.1655 24 6 -9.9156 -7.3389 1.0204 25 8 -8.6997 -7.9014 1.1133 26 6 -1.3420 -6.7542 -1.4013 27 6 -0.6440 -5.4272 -1.1991 28 8 -0.3962 -4.6314 -2.0802 29 6 -0.1057 -2.7570 0.0025 30 1 -0.4850 0.8400 -0.0004 31 1 2.5620 -4.0320 0.6574 32 1 1.8328 -4.2355 -0.9957 33 1 0.3582 -4.0631 1.7307 34 1 -1.2424 -6.0734 1.8216 35 1 0.0868 -7.0499 1.1309 36 1 -3.3061 -5.8798 0.7400 37 1 -5.7325 -6.9128 1.2943 38 1 -5.7879 -6.0989 -0.2877 39 1 -6.4621 -8.2308 -1.3604 40 1 -6.4066 -9.0443 0.2219 41 1 -8.4909 -6.5258 -1.7975 42 1 -10.8542 -6.1610 -0.5415 43 1 -10.6913 -7.3834 1.7706 44 1 -2.2101 -6.6337 -2.0493 45 1 -0.6525 -7.4883 -1.8181 46 1 -0.5311 -2.8722 -0.9944 47 1 -0.7188 -2.1400 0.6593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108508345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:59 Heat of formation + Delta-G solvation = 11.321477 kcal Electronic energy + Delta-G solvation = -29758.971246 eV Core-core repulsion = 25524.782307 eV Total energy + Delta-G solvation = -4234.188938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.85656 -40.82144 -39.60592 -37.29785 -36.43657 -34.39584 -33.98774 -33.09039 -32.18976 -30.57494 -29.09163 -27.59977 -27.12303 -24.95287 -24.74333 -23.42831 -22.05330 -21.84195 -20.84041 -20.56856 -20.30550 -18.32408 -17.92569 -17.15219 -17.04260 -16.76366 -16.28012 -16.21294 -15.97923 -15.23157 -14.91703 -14.75153 -14.53132 -14.05172 -13.97624 -13.78992 -13.49080 -13.37381 -13.12503 -13.01888 -12.85825 -12.69878 -12.51044 -12.37642 -11.97557 -11.80374 -11.74899 -11.45794 -11.40667 -11.36969 -10.86455 -10.70306 -10.26832 -10.22403 -10.12972 -9.97178 -9.63708 -9.50133 -9.17600 -8.76748 -8.68382 -8.20750 -6.83172 -5.74307 -3.05992 1.40306 2.30414 2.33543 2.61532 2.88382 2.95873 3.23443 3.40847 3.46320 3.48468 4.17552 4.27819 4.40892 4.49880 4.50241 4.61796 4.71797 4.74210 4.75484 4.89193 5.02318 5.14900 5.22411 5.34351 5.35823 5.39438 5.51877 5.52197 5.56105 5.58668 5.61319 5.67972 5.72744 5.81231 5.83776 6.17791 6.20459 6.27497 6.50608 6.57364 6.83472 6.85855 7.17333 7.26502 7.47700 7.56359 7.60578 7.90876 7.99460 8.55054 9.06864 9.72984 10.61843 11.43072 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.002072 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.913101 B =13511.310533 C =14998.728667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.112 3.888 11 C 0.098 3.902 12 N -0.609 5.609 13 C 0.095 3.905 14 C 0.134 3.866 15 H 0.114 0.886 16 N -0.721 5.721 17 C 0.519 3.481 18 O -0.539 6.539 19 C -0.140 4.140 20 C -0.023 4.023 21 C -0.011 4.011 22 C -0.208 4.208 23 C -0.213 4.213 24 C -0.045 4.045 25 O -0.176 6.176 26 C -0.166 4.166 27 C 0.512 3.488 28 O -0.509 6.509 29 C 0.154 3.846 30 H 0.253 0.747 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.406 0.594 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.202 0.798 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.055 0.945 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.637 -19.641 4.870 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.004 4.004 12 N -0.345 5.345 13 C -0.029 4.029 14 C 0.029 3.971 15 H 0.132 0.868 16 N -0.373 5.373 17 C 0.306 3.694 18 O -0.416 6.416 19 C -0.180 4.180 20 C -0.060 4.060 21 C -0.062 4.062 22 C -0.228 4.228 23 C -0.232 4.232 24 C -0.112 4.112 25 O -0.073 6.073 26 C -0.208 4.208 27 C 0.298 3.702 28 O -0.384 6.384 29 C 0.028 3.972 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.242 0.758 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.166 0.834 42 H 0.165 0.835 43 H 0.218 0.782 44 H 0.119 0.881 45 H 0.128 0.872 46 H 0.073 0.927 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.151 -19.710 4.278 25.839 hybrid contribution 0.140 1.575 0.025 1.581 sum -16.011 -18.135 4.303 24.571 Atomic orbital electron populations 1.69835 1.05016 1.25154 1.56661 1.24800 0.95707 0.97553 1.02479 0.86027 0.78724 0.83662 0.77231 1.20453 1.21727 1.21723 1.19039 0.90235 0.81716 1.43675 0.90138 1.45713 1.02428 0.99168 1.85838 1.22916 0.94218 0.86869 0.97566 1.24052 0.94319 0.83762 0.98287 1.48537 1.58882 1.18974 1.08095 1.22323 0.97190 0.88492 0.94893 1.21841 0.80939 1.00244 0.94088 0.86797 1.46061 1.05380 1.24018 1.61846 1.20559 0.86807 0.84135 0.77874 1.90723 1.86211 1.22838 1.41803 1.21695 0.91060 1.00968 1.04283 1.19827 0.84066 0.98645 1.03494 1.22440 0.95537 1.02123 0.86056 1.21668 0.94589 1.04258 1.02238 1.21873 0.99734 1.05610 0.96024 1.24039 0.86660 1.00203 1.00319 1.84021 1.24143 1.60851 1.38239 1.22817 1.02610 0.97120 0.98215 1.20702 0.79071 0.87810 0.82593 1.90792 1.54369 1.47927 1.45310 1.22763 0.88336 0.87232 0.98888 0.93735 0.93974 0.94221 0.87703 0.89797 0.89716 0.75823 0.88228 0.87990 0.87933 0.89184 0.83355 0.83467 0.78155 0.88101 0.87212 0.92733 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.88 11.39 55.49 0.63 -27.25 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 9 N -0.61 -16.15 3.70 -177.92 -0.66 -16.81 16 10 C 0.11 2.40 8.43 -2.97 -0.03 2.37 16 11 C 0.10 1.81 4.81 -70.16 -0.34 1.47 16 12 N -0.61 -8.83 3.16 -166.66 -0.53 -9.35 16 13 C 0.10 0.87 6.96 -3.12 -0.02 0.85 16 14 C 0.13 1.19 3.42 -66.30 -0.23 0.96 16 15 H 0.11 0.92 7.72 -51.93 -0.40 0.52 16 16 N -0.72 -5.94 5.16 -52.23 -0.27 -6.21 16 17 C 0.52 4.69 7.83 -10.98 -0.09 4.60 16 18 O -0.54 -6.55 15.72 5.56 0.09 -6.47 16 19 C -0.14 -0.95 5.68 -27.88 -0.16 -1.11 16 20 C -0.02 -0.17 5.04 -27.88 -0.14 -0.31 16 21 C -0.01 -0.10 6.58 -35.62 -0.23 -0.33 16 22 C -0.21 -1.77 10.81 -39.70 -0.43 -2.20 16 23 C -0.21 -1.65 10.91 -39.70 -0.43 -2.08 16 24 C -0.04 -0.32 12.09 29.42 0.36 0.03 16 25 O -0.18 -1.62 10.65 5.71 0.06 -1.56 16 26 C -0.17 -1.91 6.58 -26.74 -0.18 -2.09 16 27 C 0.51 8.37 7.42 -10.86 -0.08 8.29 16 28 O -0.51 -11.19 14.61 5.55 0.08 -11.11 16 29 C 0.15 3.75 6.90 -2.85 -0.02 3.73 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.91 7.22 -51.93 -0.37 0.54 16 33 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 34 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.41 2.90 8.58 -40.82 -0.35 2.55 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.20 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 45 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 1.48 5.75 -51.93 -0.30 1.18 16 47 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -37.89 392.84 -8.79 -46.69 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.83 Total: 1.25 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -2.27 Total: 7.32 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.82 Total: -59.61 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.23 Total: -19.13 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.89 -8.79 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108508345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.008 kcal (2) G-P(sol) polarization free energy of solvation -37.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds