Wall clock time and date at job start Wed Apr 1 2020 04:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99757 * 2 1 4 4 H 1.48506 * 109.46747 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47129 * 299.99444 * 3 2 1 6 6 H 1.48497 * 109.47306 * 59.99822 * 3 2 1 7 7 C 1.38809 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.47572 * 134.49017 * 180.02562 * 9 7 2 11 11 C 1.53946 * 86.11734 * 155.35891 * 10 9 7 12 12 N 1.46497 * 113.74321 * 137.95042 * 11 10 9 13 13 C 1.46762 * 124.34850 * 122.12097 * 12 11 10 14 14 C 1.54479 * 105.53509 * 163.21275 * 13 12 11 15 15 H 1.09002 * 110.97085 * 143.33080 * 14 13 12 16 16 N 1.46501 * 111.00223 * 267.07465 * 14 13 12 17 17 C 1.34780 * 119.99988 * 198.84560 * 16 14 13 18 18 O 1.21280 * 119.99755 * 0.02562 * 17 16 14 19 19 C 1.50699 * 119.99789 * 180.02562 * 17 16 14 20 20 C 1.52999 * 109.46846 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.47202 * 180.02562 * 20 19 17 22 22 C 1.34513 * 125.79033 * 89.70950 * 21 20 19 23 23 C 1.41383 * 106.84055 * 179.89395 * 22 21 20 24 24 C 1.34519 * 106.84016 * 0.37253 * 23 22 21 25 25 O 1.34301 * 108.41887 * 359.77450 * 24 23 22 26 26 C 1.54623 * 101.76448 * 25.20998 * 14 13 12 27 27 C 1.34417 * 124.35094 * 301.94861 * 12 11 10 28 28 O 1.21283 * 124.94355 * 0.43141 * 27 12 11 29 29 C 1.47809 * 134.45428 * 359.86813 * 9 7 2 30 30 H 0.96999 * 119.99865 * 0.02562 * 1 2 3 31 31 H 1.08996 * 113.77356 * 41.05688 * 10 9 7 32 32 H 1.09000 * 113.77234 * 269.65830 * 10 9 7 33 33 H 1.09000 * 113.74381 * 269.15345 * 11 10 9 34 34 H 1.09004 * 110.38933 * 44.10688 * 13 12 11 35 35 H 1.08995 * 110.11843 * 282.18104 * 13 12 11 36 36 H 0.97004 * 119.99926 * 18.85712 * 16 14 13 37 37 H 1.09007 * 109.47307 * 300.00490 * 19 17 16 38 38 H 1.09002 * 109.47338 * 60.00566 * 19 17 16 39 39 H 1.09003 * 109.47165 * 299.99481 * 20 19 17 40 40 H 1.08997 * 109.47472 * 60.00260 * 20 19 17 41 41 H 1.07998 * 126.58255 * 0.03113 * 22 21 20 42 42 H 1.08009 * 126.57992 * 180.12565 * 23 22 21 43 43 H 1.07999 * 125.78532 * 179.75411 * 24 23 22 44 44 H 1.09000 * 110.48720 * 216.52574 * 26 14 13 45 45 H 1.08997 * 110.48721 * 93.88170 * 26 14 13 46 46 H 1.08997 * 113.76968 * 90.37992 * 29 9 7 47 47 H 1.09000 * 113.83983 * 318.91027 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8100 0.0015 11 6 0.3466 -4.0826 0.6409 12 7 -0.3333 -5.2613 0.0980 13 6 -0.7658 -6.4109 0.9012 14 6 -1.7821 -7.1716 0.0210 15 1 -1.6876 -8.2489 0.1581 16 7 -3.1510 -6.7289 0.2973 17 6 -4.1949 -7.5012 -0.0637 18 8 -4.0010 -8.5630 -0.6169 19 6 -5.6030 -7.0455 0.2201 20 6 -6.5914 -8.0979 -0.2862 21 6 -7.9996 -7.6419 -0.0030 22 6 -8.7664 -6.9009 -0.8230 23 6 -10.0035 -6.7100 -0.1655 24 6 -9.9156 -7.3389 1.0204 25 8 -8.6997 -7.9014 1.1133 26 6 -1.3420 -6.7542 -1.4013 27 6 -0.6440 -5.4272 -1.1991 28 8 -0.3962 -4.6314 -2.0802 29 6 -0.1057 -2.7570 0.0025 30 1 -0.4850 0.8400 -0.0004 31 1 2.5620 -4.0320 0.6574 32 1 1.8328 -4.2355 -0.9957 33 1 0.3582 -4.0631 1.7307 34 1 -1.2424 -6.0734 1.8216 35 1 0.0868 -7.0499 1.1309 36 1 -3.3061 -5.8798 0.7400 37 1 -5.7325 -6.9128 1.2943 38 1 -5.7879 -6.0989 -0.2877 39 1 -6.4621 -8.2308 -1.3604 40 1 -6.4066 -9.0443 0.2219 41 1 -8.4909 -6.5258 -1.7975 42 1 -10.8542 -6.1610 -0.5415 43 1 -10.6913 -7.3834 1.7706 44 1 -2.2101 -6.6337 -2.0493 45 1 -0.6525 -7.4883 -1.8181 46 1 -0.5311 -2.8722 -0.9944 47 1 -0.7188 -2.1400 0.6593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108508345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:58 Heat of formation + Delta-G solvation = -15.952722 kcal Electronic energy + Delta-G solvation = -29760.153944 eV Core-core repulsion = 25524.782307 eV Total energy + Delta-G solvation = -4235.371636 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.44949 -41.91899 -40.56903 -38.93537 -37.63686 -35.12618 -35.00281 -34.11162 -33.67261 -31.77167 -29.81290 -29.14988 -28.31751 -26.61356 -25.66255 -25.13721 -22.70464 -22.62841 -22.08760 -21.51575 -21.09945 -19.71709 -18.79452 -18.55967 -17.93673 -17.82740 -17.55272 -16.99612 -16.87770 -16.64671 -16.21259 -15.93280 -15.57496 -15.43732 -15.05641 -14.85733 -14.68703 -14.36798 -14.18664 -13.94817 -13.71384 -13.54016 -13.43193 -13.35642 -13.27005 -13.18681 -12.99749 -12.84930 -12.72118 -12.66139 -12.38910 -12.03660 -12.02995 -11.85450 -11.52832 -11.05867 -10.95997 -10.80974 -10.63417 -10.09499 -9.55530 -9.34814 -8.94142 -7.93437 -5.27587 0.81461 1.42799 1.45358 1.55437 1.60450 1.65465 1.71779 1.98986 2.04590 2.30055 2.47965 3.25151 3.36564 3.46385 3.49930 3.65190 3.80215 3.88911 3.93102 4.08385 4.16997 4.18233 4.25614 4.26851 4.36221 4.54087 4.60371 4.64691 4.71456 4.77952 4.79021 4.84339 4.90832 4.93191 4.97777 5.02818 5.10504 5.21626 5.23570 5.28836 5.47238 5.48203 5.63869 5.86237 5.89983 6.24510 6.28659 6.50510 6.88371 7.22137 7.26986 7.56852 8.52432 9.23888 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.002072 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.913101 B =13511.310533 C =14998.728667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.285 1.285 7 C -0.236 4.236 8 H 0.085 0.915 9 N -0.636 5.636 10 C 0.111 3.889 11 C 0.138 3.862 12 N -0.606 5.606 13 C 0.096 3.904 14 C 0.145 3.855 15 H 0.135 0.865 16 N -0.717 5.717 17 C 0.522 3.478 18 O -0.570 6.570 19 C -0.133 4.133 20 C -0.018 4.018 21 C -0.024 4.024 22 C -0.223 4.223 23 C -0.231 4.231 24 C -0.044 4.044 25 O -0.191 6.191 26 C -0.154 4.154 27 C 0.501 3.499 28 O -0.577 6.577 29 C 0.150 3.850 30 H 0.248 0.752 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.413 0.587 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.235 0.765 44 H 0.092 0.908 45 H 0.129 0.871 46 H 0.019 0.981 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.646 -21.192 7.024 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.811 3.189 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.103 0.897 9 N -0.363 5.363 10 C -0.015 4.015 11 C 0.035 3.965 12 N -0.339 5.339 13 C -0.026 4.026 14 C 0.040 3.960 15 H 0.153 0.847 16 N -0.369 5.369 17 C 0.310 3.690 18 O -0.450 6.450 19 C -0.173 4.173 20 C -0.056 4.056 21 C -0.074 4.074 22 C -0.242 4.242 23 C -0.250 4.250 24 C -0.111 4.111 25 O -0.088 6.088 26 C -0.196 4.196 27 C 0.290 3.710 28 O -0.457 6.457 29 C 0.024 3.976 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.156 0.844 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.250 0.750 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.172 0.828 42 H 0.181 0.819 43 H 0.251 0.749 44 H 0.110 0.890 45 H 0.147 0.853 46 H 0.037 0.963 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.160 -21.322 6.481 27.528 hybrid contribution 0.096 1.999 -0.698 2.119 sum -16.064 -19.323 5.783 25.786 Atomic orbital electron populations 1.70037 1.06559 1.25571 1.57987 1.25716 0.96665 1.01109 1.02755 0.84941 0.78179 0.78977 0.76785 1.18802 1.22353 1.21135 1.19465 0.90839 0.83188 1.42917 0.89749 1.46160 1.03679 1.00588 1.85844 1.23010 0.96980 0.84126 0.97398 1.23342 0.91505 0.82596 0.99100 1.48479 1.57824 1.19239 1.08378 1.22701 0.98497 0.86648 0.94722 1.21855 0.81036 1.01241 0.91883 0.84730 1.46074 1.05168 1.24197 1.61449 1.20844 0.87541 0.83570 0.77021 1.90714 1.86693 1.24267 1.43279 1.21665 0.89446 1.00798 1.05346 1.19765 0.83931 0.98660 1.03207 1.22585 0.95978 1.02597 0.86217 1.21933 0.95199 1.04421 1.02676 1.22186 1.00057 1.06283 0.96446 1.24748 0.86471 0.98975 1.00892 1.84015 1.24962 1.61320 1.38499 1.22783 1.02100 0.94489 1.00212 1.21574 0.78398 0.88666 0.82373 1.90760 1.57011 1.50472 1.47427 1.22563 0.87240 0.90692 0.97119 0.94256 0.91393 0.96046 0.84403 0.87161 0.86562 0.75016 0.86605 0.87291 0.88367 0.89624 0.82795 0.81945 0.74903 0.88995 0.85262 0.96272 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.63 11.39 21.65 0.25 -59.38 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 3 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 7 C -0.24 -13.85 10.70 84.03 0.90 -12.95 16 8 H 0.08 4.72 7.83 -2.91 -0.02 4.70 16 9 N -0.64 -34.55 3.70 -716.82 -2.65 -37.21 16 10 C 0.11 4.72 8.43 86.49 0.73 5.45 16 11 C 0.14 4.90 4.81 46.75 0.22 5.12 16 12 N -0.61 -16.37 3.16 -799.77 -2.52 -18.89 16 13 C 0.10 1.34 6.96 86.83 0.60 1.94 16 14 C 0.15 2.09 3.42 46.05 0.16 2.25 16 15 H 0.14 1.58 7.72 -2.39 -0.02 1.56 16 16 N -0.72 -9.97 5.16 -437.54 -2.26 -12.23 16 17 C 0.52 8.47 7.83 87.66 0.69 9.15 16 18 O -0.57 -12.98 15.72 -3.03 -0.05 -13.03 16 19 C -0.13 -1.61 5.68 29.85 0.17 -1.44 16 20 C -0.02 -0.26 5.04 29.85 0.15 -0.11 16 21 C -0.02 -0.40 6.58 24.83 0.16 -0.24 16 22 C -0.22 -3.69 10.81 22.19 0.24 -3.45 16 23 C -0.23 -3.32 10.91 22.19 0.24 -3.08 16 24 C -0.04 -0.57 12.09 66.97 0.81 0.24 16 25 O -0.19 -3.31 10.65 -2.47 -0.03 -3.33 16 26 C -0.15 -3.31 6.58 30.59 0.20 -3.11 16 27 C 0.50 16.27 7.42 87.90 0.65 16.92 16 28 O -0.58 -26.59 14.61 -3.04 -0.04 -26.64 16 29 C 0.15 7.55 6.90 86.44 0.60 8.15 16 30 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 32 H 0.02 1.01 7.22 -2.39 -0.02 0.99 16 33 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 34 H 0.11 1.08 8.04 -2.38 -0.02 1.07 16 35 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.41 4.80 8.58 -92.70 -0.79 4.01 16 37 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 1.48 8.10 -2.39 -0.02 1.46 16 40 H 0.09 1.31 8.10 -2.39 -0.02 1.29 16 41 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 42 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.23 1.07 8.06 -2.91 -0.02 1.05 16 44 H 0.09 2.19 8.09 -2.39 -0.02 2.17 16 45 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.02 1.12 5.75 -2.39 -0.01 1.10 16 47 H 0.04 2.38 7.16 -2.39 -0.02 2.36 16 Total: -1.00 -87.71 392.84 1.91 -85.79 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.20 Total: 14.58 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 6.99 Total: 21.20 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -7.19 Total: -127.71 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.12 Total: -43.00 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -87.71 1.91 -85.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108508345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.840 kcal (2) G-P(sol) polarization free energy of solvation -87.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds