Wall clock time and date at job start Wed Apr 1 2020 05:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99534 * 2 1 4 4 H 1.48508 * 109.47128 * 239.99746 * 3 2 1 5 5 H 1.48499 * 109.47577 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46898 * 120.00324 * 3 2 1 7 7 C 1.38816 * 120.00498 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00191 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99615 * 0.02562 * 7 2 1 10 10 C 1.50242 * 130.83903 * 359.97264 * 9 7 2 11 11 H 1.08996 * 115.85662 * 0.39393 * 10 9 7 12 12 C 1.55843 * 101.04891 * 234.00430 * 10 9 7 13 13 C 1.54860 * 103.44723 * 327.06409 * 12 10 9 14 14 C 1.50240 * 130.83614 * 180.02562 * 9 7 2 15 15 H 1.09001 * 115.85838 * 359.60836 * 14 9 7 16 16 C 1.55846 * 101.04866 * 233.93023 * 14 9 7 17 17 H 1.09002 * 110.75866 * 85.61817 * 16 14 9 18 18 N 1.46496 * 110.62591 * 208.56996 * 16 14 9 19 19 C 1.34777 * 120.00251 * 270.02664 * 18 16 14 20 20 O 1.21274 * 120.00029 * 0.02562 * 19 18 16 21 21 C 1.50706 * 119.99920 * 179.97438 * 19 18 16 22 22 C 1.52998 * 109.46751 * 180.02562 * 21 19 18 23 23 N 1.46506 * 109.46706 * 180.02562 * 22 21 19 24 24 C 1.34777 * 119.99875 * 180.02562 * 23 22 21 25 25 O 1.21701 * 119.99981 * 359.72783 * 24 23 22 26 26 C 1.46656 * 120.00261 * 179.97438 * 24 23 22 27 27 C 1.36537 * 125.99273 * 179.43956 * 26 24 23 28 28 C 1.40362 * 106.70935 * 179.88533 * 27 26 24 29 29 C 1.35127 * 107.11647 * 0.38003 * 28 27 26 30 30 O 1.33929 * 108.76700 * 359.75829 * 29 28 27 31 31 C 1.54850 * 103.44543 * 327.06367 * 16 14 9 32 32 H 0.96994 * 120.00444 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.62834 * 85.55014 * 12 10 9 34 34 H 1.08998 * 110.62596 * 208.57564 * 12 10 9 35 35 H 1.09000 * 110.62534 * 241.51470 * 13 12 10 36 36 H 1.08997 * 110.62885 * 118.48908 * 13 12 10 37 37 H 0.97003 * 119.99722 * 90.02723 * 18 16 14 38 38 H 1.09005 * 109.46855 * 60.00257 * 21 19 18 39 39 H 1.08997 * 109.47288 * 300.00016 * 21 19 18 40 40 H 1.08999 * 109.47509 * 60.00175 * 22 21 19 41 41 H 1.08997 * 109.47228 * 300.00040 * 22 21 19 42 42 H 0.96995 * 120.00379 * 359.97438 * 23 22 21 43 43 H 1.08002 * 126.64399 * 0.02562 * 27 26 24 44 44 H 1.08005 * 126.44210 * 180.10225 * 28 27 26 45 45 H 1.08001 * 125.61587 * 179.79112 * 29 28 27 46 46 H 1.09008 * 110.62743 * 118.49329 * 31 16 14 47 47 H 1.09001 * 110.62237 * 241.50613 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1499 -2.6706 0.0006 11 1 -0.8012 -1.7967 -0.0061 12 6 -0.2741 -3.6097 1.2381 13 6 1.0670 -4.3839 1.2387 14 6 1.8189 -3.8072 0.0016 15 1 2.9015 -3.9342 -0.0043 16 6 1.0673 -4.3855 -1.2351 17 1 1.6240 -4.1901 -2.1517 18 7 0.8336 -5.8224 -1.0715 19 6 1.7488 -6.7085 -1.5119 20 8 2.7659 -6.3162 -2.0432 21 6 1.5086 -8.1866 -1.3430 22 6 2.6913 -8.9649 -1.9229 23 7 2.4575 -10.4019 -1.7592 24 6 3.3731 -11.2879 -2.1988 25 8 4.3917 -10.8944 -2.7361 26 6 3.1394 -12.7264 -2.0345 27 6 3.9748 -13.7267 -2.4418 28 6 3.3608 -14.9366 -2.0824 29 6 2.1883 -14.6261 -1.4868 30 8 2.0585 -13.2934 -1.4597 31 6 -0.2738 -3.6113 -1.2358 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3815 -3.0271 2.1530 34 1 -1.1130 -4.2951 1.1173 35 1 0.8932 -5.4532 1.1182 36 1 1.6247 -4.1853 2.1539 37 1 0.0202 -6.1361 -0.6462 38 1 0.5954 -8.4686 -1.8673 39 1 1.4056 -8.4193 -0.2831 40 1 3.6042 -8.6829 -1.3983 41 1 2.7947 -8.7324 -2.9827 42 1 1.6442 -10.7157 -1.3339 43 1 4.9251 -13.6095 -2.9413 44 1 3.7500 -15.9294 -2.2541 45 1 1.4738 -15.3357 -1.0964 46 1 -0.3810 -3.0298 -2.1516 47 1 -1.1127 -4.2965 -1.1145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110076205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:21 Heat of formation + Delta-G solvation = -6.392077 kcal Electronic energy + Delta-G solvation = -29690.340565 eV Core-core repulsion = 25455.383509 eV Total energy + Delta-G solvation = -4234.957056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.10591 -40.19682 -39.66912 -38.44566 -35.54996 -33.96595 -33.52134 -32.37950 -31.62497 -30.07362 -29.27031 -29.01341 -27.56232 -25.04831 -24.08576 -22.81355 -22.14864 -21.37161 -20.88837 -20.38691 -19.54330 -18.95359 -18.53265 -17.32012 -16.92113 -16.81783 -16.67995 -16.05178 -15.77560 -15.34940 -14.98621 -14.82488 -14.49890 -14.34523 -13.97945 -13.63613 -13.44851 -13.40597 -13.32398 -13.09636 -12.37410 -12.29217 -12.10635 -11.81091 -11.68370 -11.49880 -11.06374 -10.93459 -10.91318 -10.83346 -10.69129 -10.51931 -10.24518 -10.12986 -9.89676 -9.70147 -9.53969 -9.38388 -9.26594 -9.10203 -8.94217 -8.54029 -6.92908 -5.73703 -3.11763 0.64177 1.91448 2.21925 2.73897 2.78004 2.83046 3.40310 3.44416 3.45083 3.51432 4.22243 4.44490 4.45010 4.46095 4.62570 4.81494 4.87752 5.17446 5.17798 5.21664 5.32053 5.36983 5.43505 5.55301 5.63078 5.74824 5.78696 5.82770 5.85922 5.93912 5.97476 6.04360 6.09006 6.27691 6.30456 6.35703 6.51073 6.56991 6.65207 6.79226 6.93466 6.96979 7.06521 7.24943 7.51153 7.70715 7.71738 7.80696 8.15645 8.43242 9.09517 9.72129 10.52023 11.35860 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029564 B = 0.001740 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.879706 B =16083.516087 C =16586.075001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.211 4.211 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.153 3.847 11 H 0.155 0.845 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.085 0.915 16 C 0.126 3.874 17 H 0.084 0.916 18 N -0.711 5.711 19 C 0.512 3.488 20 O -0.539 6.539 21 C -0.155 4.155 22 C 0.133 3.867 23 N -0.720 5.720 24 C 0.602 3.398 25 O -0.514 6.514 26 C -0.079 4.079 27 C -0.120 4.120 28 C -0.225 4.225 29 C -0.007 4.007 30 O -0.165 6.165 31 C -0.141 4.141 32 H 0.254 0.746 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.395 0.605 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.405 0.595 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.211 0.789 46 H 0.065 0.935 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 -28.747 -0.895 28.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.339 4.339 8 H 0.097 0.903 9 N -0.310 5.310 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.176 4.176 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.103 0.897 16 C 0.020 3.980 17 H 0.102 0.898 18 N -0.361 5.361 19 C 0.297 3.703 20 O -0.416 6.416 21 C -0.195 4.195 22 C 0.010 3.990 23 N -0.372 5.372 24 C 0.387 3.613 25 O -0.391 6.391 26 C -0.131 4.131 27 C -0.141 4.141 28 C -0.244 4.244 29 C -0.077 4.077 30 O -0.061 6.061 31 C -0.181 4.181 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.230 0.770 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.239 0.761 43 H 0.179 0.821 44 H 0.175 0.825 45 H 0.227 0.773 46 H 0.084 0.916 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.590 -27.565 -1.557 27.655 hybrid contribution -0.286 0.123 0.443 0.541 sum -1.876 -27.442 -1.115 27.528 Atomic orbital electron populations 1.69417 1.04989 1.25113 1.57723 1.24698 0.95659 0.97526 1.02854 0.86101 0.78377 0.82813 0.77922 1.21193 1.21570 1.21252 1.19021 0.90366 0.81862 1.42605 0.90342 1.46477 1.01585 0.98820 1.84146 1.23775 0.87737 0.95199 0.88618 0.82853 1.23044 0.95062 0.98176 1.01322 1.22906 0.97644 0.97451 0.98962 1.23193 0.96198 0.86158 0.92568 0.89698 1.22678 0.98142 0.76745 1.00409 0.89773 1.46235 1.22193 1.07321 1.60386 1.20172 0.83873 0.87603 0.78700 1.90751 1.26998 1.80594 1.43216 1.21819 1.00288 0.93508 1.03918 1.21145 0.98033 0.76943 1.02847 1.45887 1.22846 1.07075 1.61362 1.16509 0.83588 0.82236 0.78936 1.90935 1.26945 1.77978 1.43193 1.22115 0.89572 0.94038 1.07348 1.22023 1.00879 0.90785 1.00372 1.21896 0.96768 0.99917 1.05834 1.24437 0.99741 0.81484 1.02032 1.84056 1.39446 1.20538 1.62013 1.23309 0.93978 0.98455 1.02388 0.93511 0.92650 0.93661 0.93140 0.93056 0.77018 0.88324 0.88219 0.89886 0.89970 0.76079 0.82128 0.82515 0.77252 0.91634 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.00 10.47 55.49 0.58 -25.42 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.92 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.21 -5.79 10.59 -15.06 -0.16 -5.94 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.59 -14.53 2.99 -145.81 -0.44 -14.96 16 10 C 0.15 3.37 4.72 -62.80 -0.30 3.08 16 11 H 0.15 3.88 5.52 -51.93 -0.29 3.60 16 12 C -0.14 -2.54 6.44 -24.23 -0.16 -2.69 16 13 C -0.13 -2.30 6.32 -24.24 -0.15 -2.46 16 14 C 0.13 2.63 5.35 -62.80 -0.34 2.29 16 15 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 16 C 0.13 2.28 3.14 -65.44 -0.21 2.07 16 17 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 18 N -0.71 -9.54 3.71 -51.40 -0.19 -9.73 16 19 C 0.51 6.95 7.83 -10.98 -0.09 6.87 16 20 O -0.54 -9.87 15.64 5.56 0.09 -9.78 16 21 C -0.15 -1.31 5.81 -27.88 -0.16 -1.47 16 22 C 0.13 1.41 4.96 -4.04 -0.02 1.39 16 23 N -0.72 -6.38 5.55 -61.62 -0.34 -6.72 16 24 C 0.60 6.80 7.79 -12.86 -0.10 6.70 16 25 O -0.51 -7.74 16.87 5.19 0.09 -7.65 16 26 C -0.08 -0.74 7.13 -36.80 -0.26 -1.00 16 27 C -0.12 -1.01 10.62 -39.40 -0.42 -1.43 16 28 C -0.23 -1.32 10.87 -39.89 -0.43 -1.75 16 29 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 30 O -0.17 -1.22 10.40 4.98 0.05 -1.17 16 31 C -0.14 -2.60 6.20 -24.24 -0.15 -2.75 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.04 0.70 7.82 -51.93 -0.41 0.29 16 35 H 0.05 0.73 6.39 -51.93 -0.33 0.40 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 4.13 7.92 -40.82 -0.32 3.81 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.40 2.42 8.23 -40.82 -0.34 2.09 16 43 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.16 0.54 8.06 -52.48 -0.42 0.11 16 45 H 0.21 0.16 8.06 -52.49 -0.42 -0.27 16 46 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 47 H 0.05 0.82 7.38 -51.93 -0.38 0.44 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -34.42 388.04 -8.67 -43.09 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.65 Total: 6.73 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.68 Total: 2.78 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.39 Total: -56.83 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.23 Total: -18.60 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.42 -8.67 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110076205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.697 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds