Wall clock time and date at job start Wed Apr 1 2020 05:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99534 * 2 1 4 4 H 1.48508 * 109.47128 * 239.99746 * 3 2 1 5 5 H 1.48499 * 109.47577 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46898 * 120.00324 * 3 2 1 7 7 C 1.38816 * 120.00498 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00191 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99615 * 0.02562 * 7 2 1 10 10 C 1.50242 * 130.83903 * 359.97264 * 9 7 2 11 11 H 1.08996 * 115.85662 * 0.39393 * 10 9 7 12 12 C 1.55843 * 101.04891 * 234.00430 * 10 9 7 13 13 C 1.54860 * 103.44723 * 327.06409 * 12 10 9 14 14 C 1.50240 * 130.83614 * 180.02562 * 9 7 2 15 15 H 1.09001 * 115.85838 * 359.60836 * 14 9 7 16 16 C 1.55846 * 101.04866 * 233.93023 * 14 9 7 17 17 H 1.09002 * 110.75866 * 85.61817 * 16 14 9 18 18 N 1.46496 * 110.62591 * 208.56996 * 16 14 9 19 19 C 1.34777 * 120.00251 * 270.02664 * 18 16 14 20 20 O 1.21274 * 120.00029 * 0.02562 * 19 18 16 21 21 C 1.50706 * 119.99920 * 179.97438 * 19 18 16 22 22 C 1.52998 * 109.46751 * 180.02562 * 21 19 18 23 23 N 1.46506 * 109.46706 * 180.02562 * 22 21 19 24 24 C 1.34777 * 119.99875 * 180.02562 * 23 22 21 25 25 O 1.21701 * 119.99981 * 359.72783 * 24 23 22 26 26 C 1.46656 * 120.00261 * 179.97438 * 24 23 22 27 27 C 1.36537 * 125.99273 * 179.43956 * 26 24 23 28 28 C 1.40362 * 106.70935 * 179.88533 * 27 26 24 29 29 C 1.35127 * 107.11647 * 0.38003 * 28 27 26 30 30 O 1.33929 * 108.76700 * 359.75829 * 29 28 27 31 31 C 1.54850 * 103.44543 * 327.06367 * 16 14 9 32 32 H 0.96994 * 120.00444 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.62834 * 85.55014 * 12 10 9 34 34 H 1.08998 * 110.62596 * 208.57564 * 12 10 9 35 35 H 1.09000 * 110.62534 * 241.51470 * 13 12 10 36 36 H 1.08997 * 110.62885 * 118.48908 * 13 12 10 37 37 H 0.97003 * 119.99722 * 90.02723 * 18 16 14 38 38 H 1.09005 * 109.46855 * 60.00257 * 21 19 18 39 39 H 1.08997 * 109.47288 * 300.00016 * 21 19 18 40 40 H 1.08999 * 109.47509 * 60.00175 * 22 21 19 41 41 H 1.08997 * 109.47228 * 300.00040 * 22 21 19 42 42 H 0.96995 * 120.00379 * 359.97438 * 23 22 21 43 43 H 1.08002 * 126.64399 * 0.02562 * 27 26 24 44 44 H 1.08005 * 126.44210 * 180.10225 * 28 27 26 45 45 H 1.08001 * 125.61587 * 179.79112 * 29 28 27 46 46 H 1.09008 * 110.62743 * 118.49329 * 31 16 14 47 47 H 1.09001 * 110.62237 * 241.50613 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1499 -2.6706 0.0006 11 1 -0.8012 -1.7967 -0.0061 12 6 -0.2741 -3.6097 1.2381 13 6 1.0670 -4.3839 1.2387 14 6 1.8189 -3.8072 0.0016 15 1 2.9015 -3.9342 -0.0043 16 6 1.0673 -4.3855 -1.2351 17 1 1.6240 -4.1901 -2.1517 18 7 0.8336 -5.8224 -1.0715 19 6 1.7488 -6.7085 -1.5119 20 8 2.7659 -6.3162 -2.0432 21 6 1.5086 -8.1866 -1.3430 22 6 2.6913 -8.9649 -1.9229 23 7 2.4575 -10.4019 -1.7592 24 6 3.3731 -11.2879 -2.1988 25 8 4.3917 -10.8944 -2.7361 26 6 3.1394 -12.7264 -2.0345 27 6 3.9748 -13.7267 -2.4418 28 6 3.3608 -14.9366 -2.0824 29 6 2.1883 -14.6261 -1.4868 30 8 2.0585 -13.2934 -1.4597 31 6 -0.2738 -3.6113 -1.2358 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3815 -3.0271 2.1530 34 1 -1.1130 -4.2951 1.1173 35 1 0.8932 -5.4532 1.1182 36 1 1.6247 -4.1853 2.1539 37 1 0.0202 -6.1361 -0.6462 38 1 0.5954 -8.4686 -1.8673 39 1 1.4056 -8.4193 -0.2831 40 1 3.6042 -8.6829 -1.3983 41 1 2.7947 -8.7324 -2.9827 42 1 1.6442 -10.7157 -1.3339 43 1 4.9251 -13.6095 -2.9413 44 1 3.7500 -15.9294 -2.2541 45 1 1.4738 -15.3357 -1.0964 46 1 -0.3810 -3.0298 -2.1516 47 1 -1.1127 -4.2965 -1.1145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110076205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:20 Heat of formation + Delta-G solvation = -31.480382 kcal Electronic energy + Delta-G solvation = -29691.428475 eV Core-core repulsion = 25455.383509 eV Total energy + Delta-G solvation = -4236.044966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.62435 -41.50350 -40.63749 -39.79102 -36.44502 -35.44121 -34.21275 -34.04074 -32.49412 -31.00744 -30.87139 -30.43147 -29.06724 -26.35224 -25.52092 -23.61146 -22.79036 -22.64528 -21.89173 -21.45895 -21.05394 -20.13726 -19.59192 -18.90414 -18.18856 -17.45540 -17.28329 -16.93804 -16.85035 -16.65168 -16.63658 -16.16334 -15.85641 -15.48233 -15.19865 -14.84460 -14.46060 -14.13141 -14.01539 -13.93577 -13.82174 -13.54399 -13.45610 -13.22512 -12.92714 -12.87356 -12.79470 -12.57187 -12.48092 -12.34323 -12.01936 -11.89511 -11.61950 -11.55652 -11.18031 -11.04512 -11.04019 -10.80889 -10.75996 -10.38121 -9.95523 -9.63820 -8.85151 -7.80056 -5.19029 0.01790 1.43819 1.45075 1.47287 1.53289 1.57172 1.70793 2.00597 2.06653 2.42581 2.54926 3.33067 3.52745 3.59321 3.79428 3.91697 3.96366 4.04716 4.07570 4.14551 4.16071 4.18150 4.44405 4.48612 4.55673 4.62530 4.63928 4.73789 4.83401 4.85274 4.87147 4.93905 4.97741 5.00383 5.09397 5.17354 5.19048 5.26982 5.34655 5.40262 5.48740 5.56859 5.78882 5.82749 5.90754 6.28931 6.38559 6.68571 6.96740 7.05838 7.38531 7.69203 8.55127 9.26336 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029564 B = 0.001740 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.879706 B =16083.516087 C =16586.075001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.068 0.932 9 N -0.621 5.621 10 C 0.136 3.864 11 H 0.119 0.881 12 C -0.124 4.124 13 C -0.115 4.115 14 C 0.116 3.884 15 H 0.062 0.938 16 C 0.145 3.855 17 H 0.049 0.951 18 N -0.695 5.695 19 C 0.509 3.491 20 O -0.593 6.593 21 C -0.134 4.134 22 C 0.137 3.863 23 N -0.701 5.701 24 C 0.598 3.402 25 O -0.566 6.566 26 C -0.108 4.108 27 C -0.129 4.129 28 C -0.237 4.237 29 C 0.016 3.984 30 O -0.166 6.166 31 C -0.126 4.126 32 H 0.249 0.751 33 H 0.033 0.967 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.418 0.582 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.422 0.578 43 H 0.153 0.847 44 H 0.181 0.819 45 H 0.258 0.742 46 H 0.042 0.958 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 -32.678 0.359 33.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.355 4.355 8 H 0.086 0.914 9 N -0.343 5.343 10 C 0.030 3.970 11 H 0.137 0.863 12 C -0.163 4.163 13 C -0.154 4.154 14 C 0.008 3.992 15 H 0.080 0.920 16 C 0.038 3.962 17 H 0.067 0.933 18 N -0.348 5.348 19 C 0.297 3.703 20 O -0.473 6.473 21 C -0.174 4.174 22 C 0.013 3.987 23 N -0.353 5.353 24 C 0.385 3.615 25 O -0.447 6.447 26 C -0.160 4.160 27 C -0.150 4.150 28 C -0.256 4.256 29 C -0.054 4.054 30 O -0.061 6.061 31 C -0.165 4.165 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.257 0.743 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.260 0.740 43 H 0.171 0.829 44 H 0.199 0.801 45 H 0.274 0.726 46 H 0.061 0.939 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.222 -31.561 -0.264 31.843 hybrid contribution 0.539 1.201 0.035 1.317 sum -3.683 -30.360 -0.230 30.583 Atomic orbital electron populations 1.69651 1.05764 1.25117 1.58666 1.25394 0.96586 1.00111 1.03492 0.85210 0.77228 0.79464 0.77760 1.21169 1.21477 1.20846 1.19245 0.90417 0.83734 1.42116 0.91367 1.46753 1.03197 0.99491 1.84814 1.23713 0.85771 0.95574 0.91952 0.86344 1.22937 0.97063 0.97973 0.98367 1.22815 0.96346 0.99599 0.96633 1.23349 0.95690 0.84817 0.95336 0.91972 1.22044 0.97076 0.79555 0.97546 0.93287 1.45926 1.23235 1.05058 1.60567 1.21065 0.82614 0.89616 0.77044 1.90753 1.29384 1.81792 1.45402 1.21750 1.00460 0.88557 1.06637 1.20925 0.98335 0.78173 1.01242 1.45650 1.23029 1.06006 1.60608 1.16815 0.83107 0.83386 0.78170 1.90899 1.29061 1.79085 1.45666 1.21683 0.91128 0.93112 1.10050 1.22269 1.00723 0.92137 0.99871 1.22221 0.97171 0.99997 1.06215 1.25411 0.99755 0.80818 0.99377 1.84047 1.38526 1.21760 1.61787 1.23132 0.95574 0.98251 0.99581 0.94119 0.94816 0.88977 0.88762 0.94168 0.74327 0.84323 0.84420 0.92532 0.92443 0.73954 0.82883 0.80144 0.72643 0.93945 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.76 10.47 21.65 0.23 -54.54 16 2 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 3 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.23 -12.94 10.59 84.03 0.89 -12.05 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 9 N -0.62 -31.44 2.99 -615.24 -1.84 -33.27 16 10 C 0.14 5.95 4.72 46.23 0.22 6.17 16 11 H 0.12 6.14 5.52 -2.39 -0.01 6.13 16 12 C -0.12 -4.31 6.44 32.21 0.21 -4.10 16 13 C -0.11 -3.79 6.32 32.21 0.20 -3.58 16 14 C 0.12 4.79 5.35 46.23 0.25 5.04 16 15 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 16 C 0.15 5.14 3.14 46.61 0.15 5.28 16 17 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 18 N -0.70 -16.34 3.71 -434.92 -1.61 -17.95 16 19 C 0.51 12.72 7.83 87.66 0.69 13.41 16 20 O -0.59 -22.05 15.64 -3.01 -0.05 -22.10 16 21 C -0.13 -1.75 5.81 29.85 0.17 -1.57 16 22 C 0.14 2.78 4.96 86.38 0.43 3.21 16 23 N -0.70 -11.35 5.55 -467.09 -2.59 -13.95 16 24 C 0.60 13.60 7.79 86.44 0.67 14.27 16 25 O -0.57 -18.10 16.87 -4.35 -0.07 -18.17 16 26 C -0.11 -1.93 7.13 24.07 0.17 -1.76 16 27 C -0.13 -2.10 10.62 22.39 0.24 -1.87 16 28 C -0.24 -2.14 10.87 22.07 0.24 -1.90 16 29 C 0.02 0.09 12.08 67.10 0.81 0.90 16 30 O -0.17 -1.97 10.40 -5.10 -0.05 -2.03 16 31 C -0.13 -4.44 6.20 32.21 0.20 -4.24 16 32 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 2.34 7.82 -2.39 -0.02 2.32 16 35 H 0.09 2.27 6.39 -2.39 -0.02 2.26 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.42 6.22 7.92 -92.71 -0.73 5.48 16 38 H 0.14 0.84 8.14 -2.38 -0.02 0.83 16 39 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 41 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 42 H 0.42 3.66 8.23 -92.71 -0.76 2.89 16 43 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 45 H 0.26 -1.14 8.06 -2.91 -0.02 -1.16 16 46 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.10 2.59 7.38 -2.39 -0.02 2.57 16 Total: -1.00 -84.36 388.04 1.56 -82.80 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.48 Total: 16.46 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.00 Total: 14.09 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -5.81 Total: -119.71 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.17 Total: -42.30 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -84.36 1.56 -82.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110076205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.320 kcal (2) G-P(sol) polarization free energy of solvation -84.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds