Wall clock time and date at job start Wed Apr 1 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00001 * 2 1 4 4 H 1.48494 * 109.47455 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47059 * 300.00492 * 3 2 1 6 6 H 1.48501 * 109.46773 * 59.99727 * 3 2 1 7 7 C 1.38811 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99883 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.50235 * 130.83755 * 0.02562 * 9 7 2 11 11 H 1.09006 * 116.45641 * 0.02562 * 10 9 7 12 12 C 1.55849 * 101.05270 * 233.99005 * 10 9 7 13 13 C 1.54852 * 103.44410 * 327.06246 * 12 10 9 14 14 C 1.50235 * 130.83999 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.45962 * 359.97438 * 14 9 7 16 16 C 1.55843 * 101.05211 * 233.94403 * 14 9 7 17 17 H 1.09004 * 110.76732 * 208.50572 * 16 14 9 18 18 N 1.46501 * 110.62433 * 85.55197 * 16 14 9 19 19 C 1.34782 * 120.00117 * 159.52431 * 18 16 14 20 20 O 1.21277 * 119.99832 * 359.97438 * 19 18 16 21 21 C 1.50693 * 120.00012 * 180.02562 * 19 18 16 22 22 C 1.53002 * 109.47423 * 179.97438 * 21 19 18 23 23 N 1.46501 * 109.47529 * 179.97438 * 22 21 19 24 24 C 1.34773 * 119.99933 * 179.97438 * 23 22 21 25 25 O 1.21698 * 120.00150 * 0.02562 * 24 23 22 26 26 C 1.46659 * 119.99972 * 180.02562 * 24 23 22 27 27 C 1.36540 * 125.98809 * 180.29870 * 26 24 23 28 28 C 1.40362 * 106.70990 * 180.15316 * 27 26 24 29 29 C 1.35136 * 107.11382 * 359.57420 * 28 27 26 30 30 O 1.33930 * 108.76460 * 0.26583 * 29 28 27 31 31 C 1.54852 * 103.44521 * 327.06285 * 16 14 9 32 32 H 0.96996 * 120.00234 * 359.97438 * 1 2 3 33 33 H 1.09002 * 110.62638 * 85.55378 * 12 10 9 34 34 H 1.09000 * 110.62794 * 208.57487 * 12 10 9 35 35 H 1.09000 * 110.62806 * 118.48881 * 13 12 10 36 36 H 1.08996 * 110.62669 * 241.35008 * 13 12 10 37 37 H 0.97001 * 120.00064 * 339.52277 * 18 16 14 38 38 H 1.09000 * 109.47388 * 59.99620 * 21 19 18 39 39 H 1.08998 * 109.47386 * 299.99715 * 21 19 18 40 40 H 1.09000 * 109.47117 * 59.99492 * 22 21 19 41 41 H 1.09006 * 109.46486 * 299.99938 * 22 21 19 42 42 H 0.97002 * 119.99476 * 359.97438 * 23 22 21 43 43 H 1.08007 * 126.64713 * 359.97438 * 27 26 24 44 44 H 1.08002 * 126.44813 * 179.84294 * 28 27 26 45 45 H 1.07993 * 125.62080 * 180.23360 * 29 28 27 46 46 H 1.09008 * 110.62695 * 118.48540 * 31 16 14 47 47 H 1.08998 * 110.62607 * 241.50506 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1499 -2.6706 -0.0005 11 1 -0.8104 -1.8035 -0.0010 12 6 -0.2742 -3.6101 1.2368 13 6 1.0669 -4.3843 1.2372 14 6 1.8188 -3.8072 -0.0005 15 1 2.9000 -3.9456 -0.0010 16 6 1.0665 -4.3849 -1.2371 17 1 0.8925 -5.4544 -1.1186 18 7 1.8157 -4.1188 -2.4676 19 6 1.5847 -4.8581 -3.5705 20 8 0.7568 -5.7440 -3.5442 21 6 2.3557 -4.5847 -4.8361 22 6 1.9054 -5.5574 -5.9279 23 7 2.6546 -5.2913 -7.1584 24 6 2.4242 -6.0312 -8.2610 25 8 1.5934 -6.9202 -8.2346 26 6 3.1745 -5.7651 -9.4927 27 6 3.0365 -6.4320 -10.6762 28 6 3.9470 -5.8532 -11.5741 29 6 4.5860 -4.8645 -10.9105 30 8 4.1178 -4.8146 -9.6567 31 6 -0.2745 -3.6107 -1.2367 32 1 -0.4850 0.8400 0.0004 33 1 -0.3817 -3.0276 2.1518 34 1 -1.1131 -4.2954 1.1158 35 1 1.6246 -4.1858 2.1524 36 1 0.8929 -5.4538 1.1193 37 1 2.4781 -3.4104 -2.4885 38 1 3.4212 -4.7177 -4.6483 39 1 2.1691 -3.5613 -5.1613 40 1 0.8400 -5.4249 -6.1158 41 1 2.0924 -6.5808 -5.6024 42 1 3.3165 -4.5825 -7.1795 43 1 2.3600 -7.2487 -10.8809 44 1 4.1040 -6.1407 -12.6032 45 1 5.3489 -4.2211 -11.3230 46 1 -0.3822 -3.0287 -2.1521 47 1 -1.1134 -4.2959 -1.1152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111370948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:25 Heat of formation + Delta-G solvation = -12.817363 kcal Electronic energy + Delta-G solvation = -29780.312461 eV Core-core repulsion = 25545.076784 eV Total energy + Delta-G solvation = -4235.235677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.04678 -40.01807 -39.56214 -38.44597 -35.47571 -33.81604 -33.46169 -32.57755 -31.56729 -29.99927 -29.15540 -28.80414 -27.71637 -24.91478 -24.19126 -22.81247 -22.10053 -21.33471 -20.72375 -19.92394 -19.74693 -18.90328 -18.57405 -17.07072 -17.02822 -16.75516 -16.61550 -15.94905 -15.74321 -15.64022 -14.87257 -14.69189 -14.40695 -14.02684 -13.95547 -13.52312 -13.44081 -13.38907 -13.25109 -13.06046 -12.74129 -12.09208 -12.02249 -11.88852 -11.64652 -11.23813 -11.14781 -10.97437 -10.95215 -10.63114 -10.53864 -10.46324 -10.38837 -10.11862 -9.96664 -9.74738 -9.46650 -9.27811 -9.17817 -9.04077 -9.00963 -8.49420 -6.99591 -5.79204 -3.18453 0.70201 1.96953 2.28689 2.82213 2.89071 2.90025 3.31954 3.37028 3.40307 3.65692 4.29250 4.35971 4.50443 4.55270 4.70305 4.93431 5.02974 5.08993 5.23197 5.30527 5.36917 5.37877 5.49120 5.61183 5.65835 5.73862 5.82156 5.84425 5.91382 6.02737 6.04434 6.09191 6.12422 6.28461 6.39855 6.42106 6.47132 6.57604 6.72071 6.80747 6.92579 7.08576 7.13954 7.29921 7.43023 7.75475 7.78182 7.93382 8.11500 8.55799 9.02458 9.65682 10.46970 11.29945 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013497 B = 0.002119 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.972974 B =13210.065012 C =14748.556567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.215 4.215 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.156 3.844 11 H 0.151 0.849 12 C -0.140 4.140 13 C -0.128 4.128 14 C 0.126 3.874 15 H 0.088 0.912 16 C 0.129 3.871 17 H 0.078 0.922 18 N -0.704 5.704 19 C 0.514 3.486 20 O -0.549 6.549 21 C -0.156 4.156 22 C 0.135 3.865 23 N -0.720 5.720 24 C 0.602 3.398 25 O -0.516 6.516 26 C -0.078 4.078 27 C -0.121 4.121 28 C -0.226 4.226 29 C -0.007 4.007 30 O -0.164 6.164 31 C -0.142 4.142 32 H 0.254 0.746 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.403 0.597 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.405 0.595 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.211 0.789 46 H 0.059 0.941 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 -8.890 -16.722 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.343 4.343 8 H 0.096 0.904 9 N -0.311 5.311 10 C 0.049 3.951 11 H 0.168 0.832 12 C -0.179 4.179 13 C -0.168 4.168 14 C 0.018 3.982 15 H 0.106 0.894 16 C 0.022 3.978 17 H 0.096 0.904 18 N -0.353 5.353 19 C 0.299 3.701 20 O -0.427 6.427 21 C -0.196 4.196 22 C 0.012 3.988 23 N -0.371 5.371 24 C 0.387 3.613 25 O -0.393 6.393 26 C -0.130 4.130 27 C -0.141 4.141 28 C -0.245 4.245 29 C -0.077 4.077 30 O -0.060 6.060 31 C -0.183 4.183 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.237 0.763 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.240 0.760 43 H 0.179 0.821 44 H 0.175 0.825 45 H 0.227 0.773 46 H 0.077 0.923 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.195 -9.613 -16.375 20.681 hybrid contribution 1.182 1.531 -0.269 1.952 sum 9.377 -8.083 -16.644 20.743 Atomic orbital electron populations 1.69501 1.05008 1.24916 1.57166 1.24716 0.95600 0.97514 1.02798 0.86000 0.78528 0.83651 0.77263 1.20623 1.21846 1.21816 1.19034 0.90193 0.81884 1.43169 0.90362 1.46516 1.01623 0.98562 1.84389 1.23687 0.87323 0.95189 0.88901 0.83208 1.23073 0.95274 0.98282 1.01267 1.22893 0.97744 0.97654 0.98554 1.23139 0.95977 0.86916 0.92202 0.89433 1.22645 0.92940 0.98441 0.83731 0.90410 1.46007 1.41891 1.36115 1.11297 1.20144 0.83288 0.82030 0.84674 1.90707 1.35070 1.32534 1.84415 1.21810 1.01860 1.01909 0.94035 1.21135 0.96756 0.99554 0.81366 1.45906 1.42601 1.37036 1.11542 1.16507 0.81769 0.82020 0.80960 1.90923 1.33556 1.31652 1.83147 1.22123 0.97483 0.95744 0.97661 1.22013 1.00004 1.00922 0.91208 1.21891 1.00628 0.99959 1.02009 1.24442 1.00663 1.00826 0.81729 1.84064 1.43883 1.46933 1.31079 1.23446 0.95011 0.98346 1.01473 0.93573 0.92626 0.93289 0.92458 0.92980 0.76280 0.88336 0.88102 0.89988 0.90049 0.75991 0.82149 0.82534 0.77262 0.92272 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.28 10.48 55.49 0.58 -24.70 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 20.88 29.55 -169.99 -5.02 15.85 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.21 -5.44 10.59 -15.06 -0.16 -5.59 16 8 H 0.08 1.91 7.83 -52.48 -0.41 1.49 16 9 N -0.59 -13.52 2.99 -145.81 -0.44 -13.96 16 10 C 0.16 3.47 4.68 -62.83 -0.29 3.18 16 11 H 0.15 3.86 5.57 -51.93 -0.29 3.57 16 12 C -0.14 -2.72 6.44 -24.23 -0.16 -2.87 16 13 C -0.13 -2.28 6.44 -24.21 -0.16 -2.43 16 14 C 0.13 2.36 5.04 -62.78 -0.32 2.04 16 15 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 16 C 0.13 2.31 2.73 -65.44 -0.18 2.13 16 17 H 0.08 1.41 7.37 -51.93 -0.38 1.03 16 18 N -0.70 -11.18 5.10 -51.40 -0.26 -11.44 16 19 C 0.51 7.83 7.83 -10.99 -0.09 7.74 16 20 O -0.55 -10.36 15.70 5.56 0.09 -10.27 16 21 C -0.16 -1.64 5.81 -27.89 -0.16 -1.80 16 22 C 0.14 1.59 4.96 -4.04 -0.02 1.57 16 23 N -0.72 -7.29 5.55 -61.62 -0.34 -7.64 16 24 C 0.60 7.37 7.79 -12.86 -0.10 7.27 16 25 O -0.52 -8.12 16.87 5.19 0.09 -8.03 16 26 C -0.08 -0.80 7.13 -36.80 -0.26 -1.07 16 27 C -0.12 -1.11 10.62 -39.40 -0.42 -1.53 16 28 C -0.23 -1.49 10.87 -39.89 -0.43 -1.93 16 29 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 30 O -0.16 -1.39 10.40 5.00 0.05 -1.34 16 31 C -0.14 -2.86 6.22 -24.26 -0.15 -3.01 16 32 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.81 7.83 -51.93 -0.41 0.41 16 37 H 0.40 6.02 8.62 -40.82 -0.35 5.66 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 41 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 42 H 0.41 3.05 8.23 -40.82 -0.34 2.71 16 43 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 44 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.21 0.35 8.06 -52.49 -0.42 -0.07 16 46 H 0.06 1.29 7.98 -51.92 -0.41 0.87 16 47 H 0.05 1.03 7.81 -51.93 -0.41 0.62 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -32.70 391.14 -8.75 -41.46 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.76 Total: 10.52 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -2.63 Total: 3.66 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.46 Total: -57.73 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.23 Total: -19.64 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.70 -8.75 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111370948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.639 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds