Wall clock time and date at job start Wed Apr 1 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00001 * 2 1 4 4 H 1.48494 * 109.47455 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47059 * 300.00492 * 3 2 1 6 6 H 1.48501 * 109.46773 * 59.99727 * 3 2 1 7 7 C 1.38811 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99883 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.50235 * 130.83755 * 0.02562 * 9 7 2 11 11 H 1.09006 * 116.45641 * 0.02562 * 10 9 7 12 12 C 1.55849 * 101.05270 * 233.99005 * 10 9 7 13 13 C 1.54852 * 103.44410 * 327.06246 * 12 10 9 14 14 C 1.50235 * 130.83999 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.45962 * 359.97438 * 14 9 7 16 16 C 1.55843 * 101.05211 * 233.94403 * 14 9 7 17 17 H 1.09004 * 110.76732 * 208.50572 * 16 14 9 18 18 N 1.46501 * 110.62433 * 85.55197 * 16 14 9 19 19 C 1.34782 * 120.00117 * 159.52431 * 18 16 14 20 20 O 1.21277 * 119.99832 * 359.97438 * 19 18 16 21 21 C 1.50693 * 120.00012 * 180.02562 * 19 18 16 22 22 C 1.53002 * 109.47423 * 179.97438 * 21 19 18 23 23 N 1.46501 * 109.47529 * 179.97438 * 22 21 19 24 24 C 1.34773 * 119.99933 * 179.97438 * 23 22 21 25 25 O 1.21698 * 120.00150 * 0.02562 * 24 23 22 26 26 C 1.46659 * 119.99972 * 180.02562 * 24 23 22 27 27 C 1.36540 * 125.98809 * 180.29870 * 26 24 23 28 28 C 1.40362 * 106.70990 * 180.15316 * 27 26 24 29 29 C 1.35136 * 107.11382 * 359.57420 * 28 27 26 30 30 O 1.33930 * 108.76460 * 0.26583 * 29 28 27 31 31 C 1.54852 * 103.44521 * 327.06285 * 16 14 9 32 32 H 0.96996 * 120.00234 * 359.97438 * 1 2 3 33 33 H 1.09002 * 110.62638 * 85.55378 * 12 10 9 34 34 H 1.09000 * 110.62794 * 208.57487 * 12 10 9 35 35 H 1.09000 * 110.62806 * 118.48881 * 13 12 10 36 36 H 1.08996 * 110.62669 * 241.35008 * 13 12 10 37 37 H 0.97001 * 120.00064 * 339.52277 * 18 16 14 38 38 H 1.09000 * 109.47388 * 59.99620 * 21 19 18 39 39 H 1.08998 * 109.47386 * 299.99715 * 21 19 18 40 40 H 1.09000 * 109.47117 * 59.99492 * 22 21 19 41 41 H 1.09006 * 109.46486 * 299.99938 * 22 21 19 42 42 H 0.97002 * 119.99476 * 359.97438 * 23 22 21 43 43 H 1.08007 * 126.64713 * 359.97438 * 27 26 24 44 44 H 1.08002 * 126.44813 * 179.84294 * 28 27 26 45 45 H 1.07993 * 125.62080 * 180.23360 * 29 28 27 46 46 H 1.09008 * 110.62695 * 118.48540 * 31 16 14 47 47 H 1.08998 * 110.62607 * 241.50506 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1499 -2.6706 -0.0005 11 1 -0.8104 -1.8035 -0.0010 12 6 -0.2742 -3.6101 1.2368 13 6 1.0669 -4.3843 1.2372 14 6 1.8188 -3.8072 -0.0005 15 1 2.9000 -3.9456 -0.0010 16 6 1.0665 -4.3849 -1.2371 17 1 0.8925 -5.4544 -1.1186 18 7 1.8157 -4.1188 -2.4676 19 6 1.5847 -4.8581 -3.5705 20 8 0.7568 -5.7440 -3.5442 21 6 2.3557 -4.5847 -4.8361 22 6 1.9054 -5.5574 -5.9279 23 7 2.6546 -5.2913 -7.1584 24 6 2.4242 -6.0312 -8.2610 25 8 1.5934 -6.9202 -8.2346 26 6 3.1745 -5.7651 -9.4927 27 6 3.0365 -6.4320 -10.6762 28 6 3.9470 -5.8532 -11.5741 29 6 4.5860 -4.8645 -10.9105 30 8 4.1178 -4.8146 -9.6567 31 6 -0.2745 -3.6107 -1.2367 32 1 -0.4850 0.8400 0.0004 33 1 -0.3817 -3.0276 2.1518 34 1 -1.1131 -4.2954 1.1158 35 1 1.6246 -4.1858 2.1524 36 1 0.8929 -5.4538 1.1193 37 1 2.4781 -3.4104 -2.4885 38 1 3.4212 -4.7177 -4.6483 39 1 2.1691 -3.5613 -5.1613 40 1 0.8400 -5.4249 -6.1158 41 1 2.0924 -6.5808 -5.6024 42 1 3.3165 -4.5825 -7.1795 43 1 2.3600 -7.2487 -10.8809 44 1 4.1040 -6.1407 -12.6032 45 1 5.3489 -4.2211 -11.3230 46 1 -0.3822 -3.0287 -2.1521 47 1 -1.1134 -4.2959 -1.1152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111370948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:25 Heat of formation + Delta-G solvation = -35.780156 kcal Electronic energy + Delta-G solvation = -29781.308202 eV Core-core repulsion = 25545.076784 eV Total energy + Delta-G solvation = -4236.231419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.64423 -41.34583 -40.64581 -39.84429 -36.46620 -35.26389 -34.39222 -34.06035 -32.52809 -30.95996 -30.79791 -30.27840 -29.17527 -26.21502 -25.68424 -23.70990 -22.76489 -22.58659 -21.60277 -21.52510 -21.02227 -20.26386 -19.57088 -18.83304 -18.15997 -17.47878 -17.36299 -17.10597 -16.85704 -16.71802 -16.66070 -15.87586 -15.63859 -15.40843 -15.22751 -14.96124 -14.46856 -14.29840 -14.06641 -13.93781 -13.69636 -13.64257 -13.55700 -12.97758 -12.89871 -12.88598 -12.76595 -12.69317 -12.48852 -12.07596 -11.92657 -11.85773 -11.69877 -11.63281 -11.21303 -11.05936 -10.94332 -10.93100 -10.63775 -10.40540 -9.90874 -9.65805 -8.85707 -7.73786 -5.13626 0.00005 1.42127 1.50490 1.52073 1.56443 1.60753 1.68864 2.01602 2.04764 2.51023 2.53834 3.39871 3.46647 3.56550 3.77307 3.93933 3.95672 4.02141 4.06029 4.12120 4.12578 4.28961 4.46918 4.47683 4.51456 4.60858 4.65162 4.73223 4.80098 4.83629 4.85469 4.91666 4.92689 4.95759 5.11092 5.15865 5.19120 5.20508 5.38973 5.39904 5.54516 5.62371 5.74021 5.81258 5.91930 6.27137 6.35355 6.68140 6.92874 7.07688 7.32789 7.74828 8.60722 9.34050 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013497 B = 0.002119 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.972974 B =13210.065012 C =14748.556567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.299 1.299 6 H -0.303 1.303 7 C -0.209 4.209 8 H 0.089 0.911 9 N -0.609 5.609 10 C 0.141 3.859 11 H 0.112 0.888 12 C -0.134 4.134 13 C -0.121 4.121 14 C 0.130 3.870 15 H 0.108 0.892 16 C 0.140 3.860 17 H 0.083 0.917 18 N -0.702 5.702 19 C 0.512 3.488 20 O -0.588 6.588 21 C -0.139 4.139 22 C 0.142 3.858 23 N -0.704 5.704 24 C 0.599 3.401 25 O -0.564 6.564 26 C -0.109 4.109 27 C -0.127 4.127 28 C -0.236 4.236 29 C 0.014 3.986 30 O -0.168 6.168 31 C -0.133 4.133 32 H 0.244 0.756 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.410 0.590 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.421 0.579 43 H 0.156 0.844 44 H 0.183 0.817 45 H 0.256 0.744 46 H 0.034 0.966 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.488 -9.086 -18.040 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.263 4.263 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.226 1.226 6 H -0.231 1.231 7 C -0.338 4.338 8 H 0.107 0.893 9 N -0.330 5.330 10 C 0.035 3.965 11 H 0.130 0.870 12 C -0.173 4.173 13 C -0.161 4.161 14 C 0.023 3.977 15 H 0.126 0.874 16 C 0.033 3.967 17 H 0.101 0.899 18 N -0.352 5.352 19 C 0.299 3.701 20 O -0.469 6.469 21 C -0.179 4.179 22 C 0.018 3.982 23 N -0.356 5.356 24 C 0.386 3.614 25 O -0.445 6.445 26 C -0.161 4.161 27 C -0.148 4.148 28 C -0.255 4.255 29 C -0.056 4.056 30 O -0.064 6.064 31 C -0.174 4.174 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.245 0.755 38 H 0.153 0.847 39 H 0.139 0.861 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.258 0.742 43 H 0.174 0.826 44 H 0.200 0.800 45 H 0.272 0.728 46 H 0.052 0.948 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.460 -9.805 -17.691 23.248 hybrid contribution 0.210 1.559 0.053 1.574 sum 11.671 -8.246 -17.638 22.700 Atomic orbital electron populations 1.69761 1.06312 1.24633 1.59278 1.25451 0.96288 1.00448 1.04092 0.85050 0.78363 0.80073 0.76067 1.18726 1.22638 1.23095 1.19409 0.90840 0.82792 1.40779 0.89301 1.46699 1.02064 0.99728 1.84497 1.23504 0.86906 0.94938 0.91195 0.87047 1.22975 0.97401 0.98036 0.98907 1.22859 0.96166 0.98920 0.98121 1.23344 0.97254 0.84400 0.92723 0.87406 1.22405 0.91725 0.98089 0.84503 0.89881 1.45950 1.41770 1.36453 1.10984 1.20860 0.82789 0.80923 0.85556 1.90696 1.36877 1.34228 1.85090 1.21733 1.03001 1.02330 0.90851 1.20894 0.95667 0.99217 0.82392 1.45710 1.42364 1.36998 1.10513 1.16802 0.81315 0.81405 0.81846 1.90885 1.35759 1.33729 1.84102 1.21708 0.99416 0.97795 0.97197 1.22277 1.00182 1.00618 0.91681 1.22230 1.00111 1.00111 1.03003 1.25415 0.99770 1.00069 0.80301 1.84054 1.43475 1.46361 1.32492 1.23305 0.96917 0.97926 0.99241 0.94663 0.94418 0.91384 0.92155 0.90123 0.75479 0.84705 0.86083 0.92550 0.91641 0.74173 0.82602 0.79974 0.72778 0.94756 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.04 10.48 21.65 0.23 -53.82 16 2 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 3 Si 0.97 43.19 29.55 68.60 2.03 45.21 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.21 -10.44 10.59 84.03 0.89 -9.55 16 8 H 0.09 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.61 -27.50 2.99 -615.24 -1.84 -29.34 16 10 C 0.14 6.38 4.68 46.21 0.22 6.60 16 11 H 0.11 6.01 5.57 -2.38 -0.01 6.00 16 12 C -0.13 -5.12 6.44 32.21 0.21 -4.92 16 13 C -0.12 -3.99 6.44 32.23 0.21 -3.78 16 14 C 0.13 4.56 5.04 46.25 0.23 4.80 16 15 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 16 C 0.14 4.80 2.73 46.61 0.13 4.93 16 17 H 0.08 2.83 7.37 -2.39 -0.02 2.82 16 18 N -0.70 -21.06 5.10 -434.92 -2.22 -23.28 16 19 C 0.51 14.92 7.83 87.65 0.69 15.61 16 20 O -0.59 -22.07 15.70 -3.02 -0.05 -22.11 16 21 C -0.14 -2.64 5.81 29.85 0.17 -2.46 16 22 C 0.14 3.33 4.96 86.38 0.43 3.76 16 23 N -0.70 -13.79 5.55 -467.09 -2.59 -16.39 16 24 C 0.60 14.92 7.79 86.44 0.67 15.59 16 25 O -0.56 -18.71 16.87 -4.34 -0.07 -18.79 16 26 C -0.11 -2.19 7.13 24.07 0.17 -2.02 16 27 C -0.13 -2.25 10.62 22.39 0.24 -2.01 16 28 C -0.24 -2.51 10.87 22.07 0.24 -2.27 16 29 C 0.01 0.11 12.08 67.10 0.81 0.92 16 30 O -0.17 -2.47 10.40 -5.03 -0.05 -2.52 16 31 C -0.13 -5.37 6.22 32.19 0.20 -5.17 16 32 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 34 H 0.07 2.31 7.81 -2.39 -0.02 2.29 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 2.23 7.83 -2.39 -0.02 2.21 16 37 H 0.41 11.27 8.62 -92.71 -0.80 10.47 16 38 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 41 H 0.07 1.75 8.10 -2.38 -0.02 1.73 16 42 H 0.42 5.51 8.23 -92.71 -0.76 4.74 16 43 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 44 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 45 H 0.26 -0.51 8.06 -2.91 -0.02 -0.53 16 46 H 0.03 1.52 7.98 -2.38 -0.02 1.50 16 47 H 0.06 2.32 7.81 -2.39 -0.02 2.30 16 Total: -1.00 -74.94 391.14 0.86 -74.09 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.55 Total: 30.17 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 5.97 Total: 16.77 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -6.42 Total: -122.82 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.17 Total: -43.42 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -74.94 0.86 -74.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111370948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.305 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds