Wall clock time and date at job start Wed Apr 1 2020 04:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00049 * 2 1 4 4 H 1.48497 * 109.47506 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47231 * 300.00366 * 3 2 1 6 6 H 1.48498 * 109.47323 * 60.00236 * 3 2 1 7 7 C 1.37873 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99971 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.64239 * 298.31311 * 9 7 2 11 11 C 1.55158 * 110.87144 * 175.06789 * 9 7 2 12 12 C 1.55137 * 101.48481 * 205.90110 * 11 9 7 13 13 N 1.47422 * 104.72346 * 37.29416 * 12 11 9 14 14 C 1.34774 * 125.65339 * 155.81923 * 13 12 11 15 15 O 1.21342 * 120.00629 * 179.69350 * 14 13 12 16 16 C 1.49457 * 119.99363 * 359.69259 * 14 13 12 17 17 O 1.21352 * 120.00272 * 359.97438 * 16 14 13 18 18 N 1.34780 * 119.99644 * 180.02562 * 16 14 13 19 19 C 1.47424 * 125.64823 * 0.03800 * 18 16 14 20 20 C 1.54908 * 104.82940 * 204.09088 * 19 18 16 21 21 C 1.55153 * 101.58630 * 322.99437 * 20 19 18 22 22 C 1.47022 * 125.64449 * 179.97438 * 18 16 14 23 23 H 1.09002 * 109.88254 * 59.55817 * 22 18 16 24 24 C 1.50697 * 109.88348 * 298.54737 * 22 18 16 25 25 C 1.34853 * 125.89142 * 326.40510 * 24 22 18 26 26 C 1.40890 * 107.41917 * 179.88544 * 25 24 22 27 27 C 1.34855 * 107.41619 * 0.38348 * 26 25 24 28 28 N 1.36339 * 125.89421 * 146.71849 * 24 22 18 29 29 H 0.97007 * 125.63089 * 0.02562 * 28 24 22 30 30 C 1.47031 * 108.70368 * 335.55316 * 13 12 11 31 31 H 0.97006 * 120.00459 * 359.97438 * 1 2 3 32 32 H 0.96701 * 113.99904 * 61.68810 * 10 9 7 33 33 H 1.09006 * 111.00432 * 324.13694 * 11 9 7 34 34 H 1.08993 * 111.00491 * 87.95524 * 11 9 7 35 35 H 1.09003 * 110.49232 * 278.45088 * 12 11 9 36 36 H 1.08996 * 110.34517 * 156.05920 * 12 11 9 37 37 H 1.08992 * 110.36764 * 322.93101 * 19 18 16 38 38 H 1.09001 * 110.36208 * 85.14843 * 19 18 16 39 39 H 1.09006 * 111.00041 * 81.06839 * 20 19 18 40 40 H 1.09003 * 111.00467 * 204.91623 * 20 19 18 41 41 H 1.09006 * 110.72087 * 277.13814 * 21 20 19 42 42 H 1.09003 * 110.72278 * 153.86459 * 21 20 19 43 43 H 1.07996 * 126.28849 * 0.03083 * 25 24 22 44 44 H 1.07997 * 126.29315 * 180.13209 * 26 25 24 45 45 H 1.07998 * 125.89068 * 179.80142 * 27 26 25 46 46 H 1.09002 * 109.88121 * 120.69978 * 30 13 12 47 47 H 1.08989 * 109.88372 * 241.87084 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2255 -3.7000 -0.1258 12 6 1.3105 -4.7743 -0.7703 13 7 0.4608 -4.0256 -1.7140 14 6 -0.1465 -4.5393 -2.8020 15 8 -0.8302 -3.8277 -3.5082 16 6 0.0223 -5.9856 -3.1388 17 8 0.7064 -6.6972 -2.4329 18 7 -0.5845 -6.4993 -4.2271 19 6 -1.4383 -5.7516 -5.1681 20 6 -2.3485 -6.8246 -5.8160 21 6 -1.3742 -8.0256 -5.9410 22 6 -0.5035 -7.8979 -4.6732 23 1 -0.8844 -8.5582 -3.8940 24 6 0.9262 -8.2524 -4.9913 25 6 1.8520 -7.4177 -5.5059 26 6 3.0487 -8.1484 -5.6435 27 6 2.8063 -9.4042 -5.2157 28 7 1.5053 -9.4740 -4.8142 29 1 1.0642 -10.2627 -4.4614 30 6 0.3802 -2.6268 -1.2682 31 1 -0.4851 0.8401 0.0004 32 1 -0.2278 -1.9344 1.2626 33 1 3.0650 -3.4556 -0.7767 34 1 2.5751 -4.0234 0.8546 35 1 0.6975 -5.2592 -0.0104 36 1 1.9099 -5.5125 -1.3031 37 1 -2.0397 -5.0169 -4.6329 38 1 -0.8279 -5.2614 -5.9266 39 1 -3.1884 -7.0689 -5.1654 40 1 -2.6973 -6.5007 -6.7966 41 1 -0.7630 -7.9345 -6.8389 42 1 -1.9217 -8.9681 -5.9398 43 1 1.7039 -6.3793 -5.7629 44 1 3.9865 -7.7731 -6.0255 45 1 3.5199 -10.2145 -5.1942 46 1 0.7612 -1.9668 -2.0476 47 1 -0.6533 -2.3709 -1.0353 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118247177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:10 Heat of formation + Delta-G solvation = -48.807507 kcal Electronic energy + Delta-G solvation = -31699.231100 eV Core-core repulsion = 27462.434773 eV Total energy + Delta-G solvation = -4236.796327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42216 -40.27559 -38.77743 -37.33721 -37.18506 -34.29093 -32.23700 -31.75773 -30.99171 -30.81828 -30.11517 -27.89080 -27.11108 -26.03585 -24.48859 -22.81032 -21.80518 -21.43072 -20.67666 -20.03333 -19.57207 -18.99263 -17.76682 -17.17096 -16.80952 -16.63923 -15.91894 -15.55874 -15.09257 -14.79448 -14.50081 -14.39000 -14.00564 -13.84841 -13.54792 -13.46304 -13.13906 -12.98096 -12.94782 -12.86699 -12.72368 -12.30728 -12.25215 -12.01092 -11.76838 -11.66916 -11.56687 -11.42136 -11.07668 -10.99495 -10.88262 -10.65710 -10.51563 -10.46005 -10.14226 -9.31135 -9.01638 -8.88053 -8.83520 -8.66821 -8.32808 -8.04837 -7.95751 -6.29484 -4.37691 1.82768 2.12907 2.52245 3.02864 3.20329 3.25473 3.29422 3.33406 3.63384 3.81258 4.26160 4.29578 4.42499 4.59007 4.69441 4.90889 4.98639 4.99142 5.11731 5.25602 5.47619 5.49641 5.52591 5.55168 5.65003 5.77853 5.83238 5.84093 5.92597 5.98555 6.07066 6.15482 6.21981 6.31851 6.35442 6.53910 6.78087 6.84311 6.86923 6.95201 7.08755 7.21099 7.28570 7.35367 7.51661 7.72221 7.84122 8.03574 8.06947 8.48341 8.66746 9.28901 9.37698 10.78404 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.002937 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.014509 B = 9530.039698 C =10167.067550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.247 3.753 10 O -0.583 6.583 11 C -0.120 4.120 12 C 0.099 3.901 13 N -0.575 5.575 14 C 0.510 3.490 15 O -0.534 6.534 16 C 0.527 3.473 17 O -0.508 6.508 18 N -0.587 5.587 19 C 0.098 3.902 20 C -0.135 4.135 21 C -0.122 4.122 22 C 0.208 3.792 23 H 0.079 0.921 24 C 0.012 3.988 25 C -0.177 4.177 26 C -0.199 4.199 27 C -0.014 4.014 28 N -0.552 5.552 29 H 0.411 0.589 30 C 0.102 3.898 31 H 0.270 0.730 32 H 0.382 0.618 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.127 0.873 44 H 0.133 0.867 45 H 0.162 0.838 46 H 0.072 0.928 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 -17.954 -12.167 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.392 6.392 11 C -0.158 4.158 12 C -0.023 4.023 13 N -0.307 5.307 14 C 0.293 3.707 15 O -0.413 6.413 16 C 0.311 3.689 17 O -0.382 6.382 18 N -0.322 5.322 19 C -0.024 4.024 20 C -0.173 4.173 21 C -0.160 4.160 22 C 0.103 3.897 23 H 0.097 0.903 24 C -0.101 4.101 25 C -0.202 4.202 26 C -0.224 4.224 27 C -0.145 4.145 28 N -0.147 5.147 29 H 0.246 0.754 30 C -0.018 4.018 31 H 0.079 0.921 32 H 0.232 0.768 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.145 0.855 44 H 0.151 0.849 45 H 0.179 0.821 46 H 0.091 0.909 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.107 -18.444 -11.953 22.079 hybrid contribution -0.023 1.080 0.030 1.080 sum -2.130 -17.364 -11.923 21.171 Atomic orbital electron populations 1.69700 1.05994 1.27834 1.49869 1.25077 0.95066 0.99797 0.93370 0.86340 0.80116 0.82674 0.77741 1.19555 1.20768 1.20745 1.21548 0.93791 0.89972 1.52051 0.91368 1.19535 0.86532 0.92306 0.80956 1.86132 1.51784 1.56530 1.44729 1.22851 0.97437 0.95064 1.00449 1.22676 0.92936 0.94971 0.91745 1.48684 1.45697 1.13264 1.23051 1.19440 0.81905 0.87455 0.81943 1.90665 1.39823 1.60853 1.49966 1.20124 0.79695 0.88907 0.80156 1.90705 1.37318 1.61121 1.49040 1.48176 1.49064 1.09695 1.25313 1.22662 0.92671 0.94684 0.92379 1.22873 0.97661 0.94923 1.01875 1.22728 0.97107 0.99483 0.96713 1.19800 0.89620 0.83765 0.96477 0.90264 1.20322 0.95702 0.86313 1.07753 1.20560 0.93171 0.99211 1.07227 1.20885 0.98953 0.93781 1.08756 1.21748 0.85729 0.99705 1.07312 1.41782 1.10402 1.10824 1.51709 0.75366 1.23212 1.02147 0.77299 0.99181 0.92050 0.76833 0.90430 0.90407 0.91496 0.89497 0.87614 0.90921 0.90420 0.89413 0.89753 0.89889 0.85465 0.84909 0.82072 0.90929 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.58 10.96 55.43 0.61 -22.98 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -14.02 8.13 -34.44 -0.28 -14.30 16 8 H 0.07 1.77 7.78 -52.49 -0.41 1.36 16 9 C 0.25 6.04 0.85 -89.94 -0.08 5.96 16 10 O -0.58 -14.74 13.07 -35.23 -0.46 -15.20 16 11 C -0.12 -2.53 6.24 -24.46 -0.15 -2.68 16 12 C 0.10 1.99 6.07 -2.41 -0.01 1.97 16 13 N -0.57 -12.41 3.32 -170.88 -0.57 -12.98 16 14 C 0.51 10.40 7.88 -11.58 -0.09 10.30 16 15 O -0.53 -11.41 14.11 5.50 0.08 -11.33 16 16 C 0.53 9.36 7.52 -11.58 -0.09 9.28 16 17 O -0.51 -9.68 13.60 5.49 0.07 -9.61 16 18 N -0.59 -8.26 2.73 -164.82 -0.45 -8.71 16 19 C 0.10 1.18 6.06 -2.53 -0.02 1.16 16 20 C -0.14 -1.09 7.08 -24.59 -0.17 -1.26 16 21 C -0.12 -0.96 6.47 -24.90 -0.16 -1.12 16 22 C 0.21 2.33 3.36 -68.10 -0.23 2.10 16 23 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 24 C 0.01 0.15 5.34 -81.79 -0.44 -0.28 16 25 C -0.18 -2.45 10.19 -39.78 -0.41 -2.85 16 26 C -0.20 -2.47 10.86 -39.78 -0.43 -2.90 16 27 C -0.01 -0.14 11.94 -16.75 -0.20 -0.34 16 28 N -0.55 -5.56 6.07 -9.12 -0.06 -5.62 16 29 H 0.41 2.88 8.96 -40.82 -0.37 2.51 16 30 C 0.10 2.48 5.24 -3.06 -0.02 2.46 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.38 9.76 7.45 45.56 0.34 10.10 16 33 H 0.08 1.58 8.05 -51.93 -0.42 1.16 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.68 6.14 -51.93 -0.32 1.36 16 37 H 0.11 1.48 6.16 -51.93 -0.32 1.16 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.67 7.85 -51.93 -0.41 0.27 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 44 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 45 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.07 1.89 7.81 -51.93 -0.41 1.48 16 47 H 0.07 1.83 7.91 -51.94 -0.41 1.42 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -30.86 380.83 -9.00 -39.87 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -6.08 Total: 16.21 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -2.87 Total: 9.21 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.47 Total: -50.28 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.31 Total: -36.14 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.86 -9.00 -39.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118247177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.942 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds