Wall clock time and date at job start Wed Apr 1 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00049 * 2 1 4 4 H 1.48497 * 109.47506 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47231 * 300.00366 * 3 2 1 6 6 H 1.48498 * 109.47323 * 60.00236 * 3 2 1 7 7 C 1.37873 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99971 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.64239 * 298.31311 * 9 7 2 11 11 C 1.55158 * 110.87144 * 175.06789 * 9 7 2 12 12 C 1.55137 * 101.48481 * 205.90110 * 11 9 7 13 13 N 1.47422 * 104.72346 * 37.29416 * 12 11 9 14 14 C 1.34774 * 125.65339 * 155.81923 * 13 12 11 15 15 O 1.21342 * 120.00629 * 179.69350 * 14 13 12 16 16 C 1.49457 * 119.99363 * 359.69259 * 14 13 12 17 17 O 1.21352 * 120.00272 * 359.97438 * 16 14 13 18 18 N 1.34780 * 119.99644 * 180.02562 * 16 14 13 19 19 C 1.47424 * 125.64823 * 0.03800 * 18 16 14 20 20 C 1.54908 * 104.82940 * 204.09088 * 19 18 16 21 21 C 1.55153 * 101.58630 * 322.99437 * 20 19 18 22 22 C 1.47022 * 125.64449 * 179.97438 * 18 16 14 23 23 H 1.09002 * 109.88254 * 59.55817 * 22 18 16 24 24 C 1.50697 * 109.88348 * 298.54737 * 22 18 16 25 25 C 1.34853 * 125.89142 * 326.40510 * 24 22 18 26 26 C 1.40890 * 107.41917 * 179.88544 * 25 24 22 27 27 C 1.34855 * 107.41619 * 0.38348 * 26 25 24 28 28 N 1.36339 * 125.89421 * 146.71849 * 24 22 18 29 29 H 0.97007 * 125.63089 * 0.02562 * 28 24 22 30 30 C 1.47031 * 108.70368 * 335.55316 * 13 12 11 31 31 H 0.97006 * 120.00459 * 359.97438 * 1 2 3 32 32 H 0.96701 * 113.99904 * 61.68810 * 10 9 7 33 33 H 1.09006 * 111.00432 * 324.13694 * 11 9 7 34 34 H 1.08993 * 111.00491 * 87.95524 * 11 9 7 35 35 H 1.09003 * 110.49232 * 278.45088 * 12 11 9 36 36 H 1.08996 * 110.34517 * 156.05920 * 12 11 9 37 37 H 1.08992 * 110.36764 * 322.93101 * 19 18 16 38 38 H 1.09001 * 110.36208 * 85.14843 * 19 18 16 39 39 H 1.09006 * 111.00041 * 81.06839 * 20 19 18 40 40 H 1.09003 * 111.00467 * 204.91623 * 20 19 18 41 41 H 1.09006 * 110.72087 * 277.13814 * 21 20 19 42 42 H 1.09003 * 110.72278 * 153.86459 * 21 20 19 43 43 H 1.07996 * 126.28849 * 0.03083 * 25 24 22 44 44 H 1.07997 * 126.29315 * 180.13209 * 26 25 24 45 45 H 1.07998 * 125.89068 * 179.80142 * 27 26 25 46 46 H 1.09002 * 109.88121 * 120.69978 * 30 13 12 47 47 H 1.08989 * 109.88372 * 241.87084 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2255 -3.7000 -0.1258 12 6 1.3105 -4.7743 -0.7703 13 7 0.4608 -4.0256 -1.7140 14 6 -0.1465 -4.5393 -2.8020 15 8 -0.8302 -3.8277 -3.5082 16 6 0.0223 -5.9856 -3.1388 17 8 0.7064 -6.6972 -2.4329 18 7 -0.5845 -6.4993 -4.2271 19 6 -1.4383 -5.7516 -5.1681 20 6 -2.3485 -6.8246 -5.8160 21 6 -1.3742 -8.0256 -5.9410 22 6 -0.5035 -7.8979 -4.6732 23 1 -0.8844 -8.5582 -3.8940 24 6 0.9262 -8.2524 -4.9913 25 6 1.8520 -7.4177 -5.5059 26 6 3.0487 -8.1484 -5.6435 27 6 2.8063 -9.4042 -5.2157 28 7 1.5053 -9.4740 -4.8142 29 1 1.0642 -10.2627 -4.4614 30 6 0.3802 -2.6268 -1.2682 31 1 -0.4851 0.8401 0.0004 32 1 -0.2278 -1.9344 1.2626 33 1 3.0650 -3.4556 -0.7767 34 1 2.5751 -4.0234 0.8546 35 1 0.6975 -5.2592 -0.0104 36 1 1.9099 -5.5125 -1.3031 37 1 -2.0397 -5.0169 -4.6329 38 1 -0.8279 -5.2614 -5.9266 39 1 -3.1884 -7.0689 -5.1654 40 1 -2.6973 -6.5007 -6.7966 41 1 -0.7630 -7.9345 -6.8389 42 1 -1.9217 -8.9681 -5.9398 43 1 1.7039 -6.3793 -5.7629 44 1 3.9865 -7.7731 -6.0255 45 1 3.5199 -10.2145 -5.1942 46 1 0.7612 -1.9668 -2.0476 47 1 -0.6533 -2.3709 -1.0353 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118247177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:09 Heat of formation + Delta-G solvation = -70.334122 kcal Electronic energy + Delta-G solvation = -31700.164564 eV Core-core repulsion = 27462.434773 eV Total energy + Delta-G solvation = -4237.729791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.41505 -41.63389 -40.21159 -38.92211 -38.56309 -36.13707 -34.25779 -32.78974 -31.90164 -31.86372 -31.71217 -29.74659 -27.98736 -27.78513 -26.01790 -24.29479 -23.03239 -22.33600 -21.54437 -21.51362 -21.04072 -20.26376 -19.14259 -18.84439 -18.15855 -18.05452 -17.28264 -17.22713 -16.82095 -16.26165 -16.06305 -15.48059 -15.30166 -14.84667 -14.84045 -14.73981 -14.60467 -14.43682 -14.31361 -14.22068 -13.92883 -13.65814 -13.54285 -13.43408 -13.21197 -12.90944 -12.88920 -12.69447 -12.57378 -12.42949 -12.39021 -12.25955 -12.14882 -11.86777 -11.67075 -11.19922 -10.73613 -10.50209 -10.29995 -10.05629 -9.76067 -9.71334 -8.91949 -8.28296 -6.44044 0.31660 1.03935 1.39006 1.41697 1.44062 1.54798 2.05011 2.09296 2.28486 2.38263 2.57899 2.97927 3.11699 3.54836 3.65205 3.75625 3.84772 4.00315 4.07333 4.12736 4.18600 4.31662 4.43461 4.50090 4.54893 4.57627 4.65968 4.73781 4.86349 4.86709 4.92464 4.93304 5.03622 5.05470 5.08515 5.17763 5.27875 5.30796 5.32907 5.39331 5.43079 5.70985 5.95755 6.02014 6.09527 6.19079 6.28414 6.52304 6.64455 6.80580 6.89672 7.25211 7.33230 8.78419 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.002937 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.014509 B = 9530.039698 C =10167.067550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.558 4.558 8 H 0.066 0.934 9 C 0.235 3.765 10 O -0.586 6.586 11 C -0.114 4.114 12 C 0.111 3.889 13 N -0.585 5.585 14 C 0.503 3.497 15 O -0.550 6.550 16 C 0.530 3.470 17 O -0.525 6.525 18 N -0.578 5.578 19 C 0.089 3.911 20 C -0.121 4.121 21 C -0.109 4.109 22 C 0.201 3.799 23 H 0.090 0.910 24 C 0.008 3.992 25 C -0.208 4.208 26 C -0.231 4.231 27 C 0.001 3.999 28 N -0.542 5.542 29 H 0.427 0.573 30 C 0.122 3.878 31 H 0.271 0.729 32 H 0.377 0.623 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.137 0.863 45 H 0.198 0.802 46 H 0.045 0.955 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 -20.408 -13.125 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.195 3.805 10 O -0.394 6.394 11 C -0.152 4.152 12 C -0.011 4.011 13 N -0.317 5.317 14 C 0.287 3.713 15 O -0.429 6.429 16 C 0.312 3.688 17 O -0.401 6.401 18 N -0.312 5.312 19 C -0.033 4.033 20 C -0.159 4.159 21 C -0.147 4.147 22 C 0.097 3.903 23 H 0.108 0.892 24 C -0.106 4.106 25 C -0.234 4.234 26 C -0.255 4.255 27 C -0.130 4.130 28 N -0.138 5.138 29 H 0.266 0.734 30 C -0.001 4.001 31 H 0.081 0.919 32 H 0.226 0.774 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.135 0.865 43 H 0.123 0.877 44 H 0.155 0.845 45 H 0.215 0.785 46 H 0.064 0.936 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.117 -20.950 -12.942 24.716 hybrid contribution -0.063 1.829 0.251 1.847 sum -2.180 -19.121 -12.691 23.052 Atomic orbital electron populations 1.69791 1.07004 1.28545 1.49924 1.25790 0.95852 1.02710 0.92932 0.85401 0.79052 0.78904 0.77654 1.19112 1.20718 1.20238 1.21809 0.93932 0.91135 1.52688 0.91539 1.19697 0.86971 0.93357 0.80503 1.86121 1.51748 1.56302 1.45247 1.22846 0.97044 0.93848 1.01434 1.22627 0.92521 0.94490 0.91416 1.48717 1.46637 1.12366 1.24014 1.20130 0.81011 0.89016 0.81153 1.90652 1.40180 1.61850 1.50266 1.19482 0.80499 0.87315 0.81476 1.90679 1.38507 1.60814 1.50120 1.48249 1.47570 1.11426 1.23945 1.22801 0.92882 0.95833 0.91771 1.22862 0.96944 0.93232 1.02841 1.22749 0.96405 1.00821 0.94713 1.20189 0.89990 0.81677 0.98407 0.89224 1.20346 0.95878 0.86960 1.07462 1.20572 0.94793 0.98801 1.09209 1.21115 0.98953 0.94965 1.10460 1.22262 0.86055 0.99729 1.04990 1.41802 1.10341 1.10750 1.50907 0.73383 1.22726 1.00278 0.78613 0.98440 0.91921 0.77415 0.89847 0.89105 0.91391 0.88397 0.89930 0.91320 0.89373 0.86980 0.89702 0.86514 0.87690 0.84522 0.78505 0.93633 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.27 10.96 21.44 0.24 -49.03 16 2 C 0.03 1.49 5.28 84.65 0.45 1.94 16 3 Si 0.96 42.15 29.54 68.60 2.03 44.17 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.56 -29.68 8.13 25.60 0.21 -29.47 16 8 H 0.07 3.48 7.78 -2.91 -0.02 3.45 16 9 C 0.23 11.74 0.85 -10.35 -0.01 11.73 16 10 O -0.59 -30.25 13.07 -148.98 -1.95 -32.20 16 11 C -0.11 -4.80 6.24 32.07 0.20 -4.60 16 12 C 0.11 4.47 6.07 86.94 0.53 5.00 16 13 N -0.58 -26.03 3.32 -812.90 -2.70 -28.73 16 14 C 0.50 21.18 7.88 87.27 0.69 21.86 16 15 O -0.55 -24.53 14.11 -3.22 -0.05 -24.57 16 16 C 0.53 18.95 7.52 87.27 0.66 19.60 16 17 O -0.52 -19.84 13.60 -3.25 -0.04 -19.88 16 18 N -0.58 -15.98 2.73 -793.74 -2.17 -18.15 16 19 C 0.09 2.10 6.06 86.85 0.53 2.63 16 20 C -0.12 -1.61 7.08 31.98 0.23 -1.38 16 21 C -0.11 -1.34 6.47 31.78 0.21 -1.13 16 22 C 0.20 4.08 3.36 44.60 0.15 4.23 16 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 24 C 0.01 0.18 5.34 41.08 0.22 0.40 16 25 C -0.21 -5.76 10.19 22.14 0.23 -5.53 16 26 C -0.23 -5.55 10.86 22.14 0.24 -5.31 16 27 C 0.00 0.02 11.94 83.22 0.99 1.02 16 28 N -0.54 -9.42 6.07 -182.77 -1.11 -10.53 16 29 H 0.43 4.49 8.96 -92.70 -0.83 3.66 16 30 C 0.12 6.14 5.24 86.73 0.45 6.59 16 31 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 32 H 0.38 19.92 7.45 -74.06 -0.55 19.37 16 33 H 0.08 3.39 8.05 -2.38 -0.02 3.37 16 34 H 0.09 3.56 8.14 -2.39 -0.02 3.55 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.10 3.76 6.14 -2.39 -0.01 3.74 16 37 H 0.08 2.37 6.16 -2.39 -0.01 2.35 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 1.10 7.85 -2.38 -0.02 1.08 16 42 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 3.25 8.06 -2.91 -0.02 3.23 16 44 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 45 H 0.20 2.02 8.06 -2.91 -0.02 1.99 16 46 H 0.05 2.49 7.81 -2.39 -0.02 2.47 16 47 H 0.05 2.47 7.91 -2.39 -0.02 2.45 16 Total: -1.00 -68.86 380.83 -0.17 -69.03 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.37 Total: 42.34 kcal Atomic # 6 Polarization: 21.60 SS G_CDS: 5.96 Total: 27.56 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -5.75 Total: -106.45 kcal Atomic # 8 Polarization: -74.62 SS G_CDS: -2.04 Total: -76.65 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.86 -0.17 -69.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118247177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.308 kcal (2) G-P(sol) polarization free energy of solvation -68.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds